Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0022560

Physical Location & Seq

Genomic Coordinates Forward (+)

12572 .. 13767

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgcggcgcttggaggattggattttgatctacatctttcttgcgatggtggtcggtgcagcaacatctggaatcggcacgggtcaacaacaatgtatgcgtggaggccgtggcatggcgtggcgactgattgtatgctgtggcgtaagggttggtgcactgggcctagttgtgggtcaacctgctagggttttgaggagcacattctttgggctgctttttgggcatggttatatatcctacctccctttggcacacatctatgagcgaactaatcaaattgtccctgacatgaaatacacctgtgaggatcagccacatcctcgtggggaaatctgtgtccgggttcccattgtcttccaaggctactacaaagatgaaatccagacgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

8.91

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022560)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20440
rosa_laevigata	RLG00000035023
rosa_multiflora	Rmu_co8100376.1_g000001 Rmu_sc0002169.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	115, 172, 250
Alw21I	GWGCWC	2 cut(s)	160, 203
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	106, 163
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	59, 214
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	160, 203
BbvI	GCAGC	2 cut(s)	71, 201
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	2 cut(s)	167, 186
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	3 cut(s)	5, 60, 215
BlsI	GCNGC	3 cut(s)	6, 61, 216
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	2 cut(s)	26, 32
BsaJI	CCNNGG	2 cut(s)	109, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 172, 250
Bse1I	ACTGG	1 cut(s)	165
Bse8I	GATNNNNATC	2 cut(s)	26, 32
BseDI	CCNNGG	2 cut(s)	109, 361
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	2 cut(s)	26, 32
BseLI	CCNNNNNNNGG	3 cut(s)	115, 172, 250
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	71, 201
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	108, 165
BsiHKAI	GWGCWC	2 cut(s)	160, 203
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	115, 172, 250
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	108, 165
Bsp1286I	GDGCHC	2 cut(s)	160, 203
Bsp143I	GATC	2 cut(s)	27, 310
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	108, 165
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	109, 361
BssMI	GATC	2 cut(s)	27, 310
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	361
Bst2BI	CACGAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	30, 313
BstMBI	GATC	2 cut(s)	27, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	71, 201
BstV2I	GAAGAC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	108, 165
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	3 cut(s)	115, 227, 292
CviJI	RGCY	5 cut(s)	108, 165, 214, 316, 366
CviKI_1	RGCY	5 cut(s)	108, 165, 214, 316, 366
CviQI	GTAC	1 cut(s)	391
DpnI	GATC	2 cut(s)	29, 312
DpnII	GATC	2 cut(s)	27, 310
Eco130I	CCWWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	118, 230, 295
FaiI	YATR	8 cut(s)	98, 116, 136, 228, 234, 236, 264, 293
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	114, 226, 291
Fnu4HI	GCNGC	3 cut(s)	5, 60, 215
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	5, 60, 215
FspBI	CTAG	2 cut(s)	167, 186
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	5, 60, 215
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	108, 165
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	118, 230, 295
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	86, 179
HindII	GTYRAC	2 cut(s)	86, 179
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	86, 158, 179
Hpy188III	TCNNGA	2 cut(s)	69, 385
Hpy8I	GTNNAC	3 cut(s)	86, 158, 179
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	59, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	118, 230, 295
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	27, 310
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	6 cut(s)	54, 146, 195, 300, 316, 356
Lsp1109I	GCAGC	2 cut(s)	71, 201
MaeI	CTAG	2 cut(s)	167, 186
MaeII	ACGT	1 cut(s)	389
MalI	GATC	2 cut(s)	29, 312
MboI	GATC	2 cut(s)	27, 310
MboII	GAAGA	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	160, 203
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	6 cut(s)	7, 98, 189, 254, 301, 333
MslI	CAYNNNNRTG	2 cut(s)	261, 324
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	2 cut(s)	27, 310
NlaIII	CATG	3 cut(s)	118, 230, 295
NlaIV	GGNNCC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	6, 61, 216
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	261, 324
SatI	GCNGC	3 cut(s)	5, 60, 215
Sau3AI	GATC	2 cut(s)	27, 310
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	160, 203
SetI	ASST	4 cut(s)	184, 246, 305, 392
SmiMI	CAYNNNNRTG	2 cut(s)	261, 324
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	167, 186
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	392
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	2 cut(s)	59, 214
TspDTI	ATGAA	2 cut(s)	308, 393
TspRI	CASTG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	156
XspI	CTAG	2 cut(s)	167, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.