Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8100376.1

Orthogroup ID

OG0022560

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 523

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8100376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 215 bp

aaatcaagctggttgatgtaccagaaatgaactacacgtgtgatgatcaaccctatccacgcggtgaaatctgtgtcaggggtcctattatttttcagggctatcacaaagatgaagtgcagacgagagaagtcattgatgaagatgggtggcttcatactggagacattgggtcatggttaactggtggtcgtctgaaaattattgataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

70

Amino Acids

8.06

Weight (kDa)

4.74

Isoelectric Point (pI)

20.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022560)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20440
rosa_laevigata	RLG00000035023
rosa_multiflora	Rmu_co8100376.1_g000001 Rmu_sc0002169.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	20
AflIII	ACRYGT	2 cut(s)	35, 37
AhdI	GACNNNNNGTC	1 cut(s)	171
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	82
BbrPI	CACGTG	1 cut(s)	38
BccI	CCATC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	82
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	165, 189
BseNI	ACTGG	2 cut(s)	165, 189
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	165, 189
BssMI	GATC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	3 cut(s)	9, 101, 153
CviKI_1	RGCY	3 cut(s)	9, 101, 153
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraIII	CACNNNGTG	1 cut(s)	64
DriI	GACNNNNNGTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	82
FaeI	CATG	1 cut(s)	179
FaiI	YATR	2 cut(s)	158, 177
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HpaI	GTTAAC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	35, 63, 82, 146, 170
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	1 cut(s)	200
MseI	TTAA	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	62
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspCI	CACGTG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	82
SetI	ASST	3 cut(s)	11, 40, 214
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	62
TaiI	ACGT	1 cut(s)	40
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	181
Tru9I	TTAA	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	43, 128, 145, 155
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.