RLG00000035023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0022560
Physical Location & Seq
Reverse (-)
59323540 .. 59323978
439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035023

Sequence Viewer

Length: 345 bp
ATGGATGTGGACTGCTGCCGGATGGGCACTAGATCACAGTGGTTGAACTGGTCCGATCTAGAGCTTGCGGTTCTTGGAGGAAGTGATCGTGTGGCGCTTGGAGGACGGATCCTGGTCAGCGTCTTTCATGCGACTGTGGTCGACGCGGCAACTTCTGGATTTAGCGCGGGTCGACAGCGCATGGCATGGCTGGGCGGCGCCGACGCTGGCGAGGAGTGGCGTGGCATAGCGCGTCGTCTGATCTTCTGCTGTGGCGTAGGGGTTGGTGCACAGGGCCTAATTGTGGGCCGTGTTGCTAGGGTTTTGAGGAGCACAATATTTGGGCTGCTCTTTGGGCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.14

Weight (kDa)

8.54

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022560)

Species Orthologous Gene IDs
pyrus_communis pycom12g20440
rosa_laevigata RLG00000035023
rosa_multiflora Rmu_co8100376.1_g000001 Rmu_sc0002169.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 141, 172
AccII CGCG 3 cut(s) 146, 167, 232
AciI CCGC 4 cut(s) 68, 146, 167, 195
AclWI GGATC 2 cut(s) 103, 116
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 2 cut(s) 271, 314
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 2 cut(s) 103, 116
AoxI GGCC 2 cut(s) 274, 286
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 15, 325
AspLEI GCGC 5 cut(s) 97, 167, 180, 200, 232
AspS9I GGNCC 3 cut(s) 51, 274, 286
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 2 cut(s) 29, 271
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 271, 314
BbvI GCAGC 2 cut(s) 2, 312
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 3 cut(s) 30, 59, 297
BfoI RGCGCY 2 cut(s) 98, 201
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 4 cut(s) 16, 147, 196, 326
BlsI GCNGC 4 cut(s) 17, 148, 197, 327
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 51, 274, 286
BmiI GGNNCC 2 cut(s) 110, 199
BmrFI CCNGG 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 10, 27
BseLI CCNNNNNNNGG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 2 cut(s) 227, 322
BseSI GKGCMC 2 cut(s) 29, 271
BseXI GCAGC 2 cut(s) 2, 312
BseYI CCCAGC 1 cut(s) 190
Bsh1236I CGCG 3 cut(s) 146, 167, 232
BshFI GGCC 2 cut(s) 276, 288
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 271, 314
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 283
BsnI GGCC 2 cut(s) 276, 288
Bsp1286I GDGCHC 3 cut(s) 29, 271, 314
Bsp143I GATC 5 cut(s) 32, 55, 85, 108, 240
BspACI CCGC 4 cut(s) 68, 146, 167, 195
BspANI GGCC 2 cut(s) 276, 288
BspFNI CGCG 3 cut(s) 146, 167, 232
BspLI GGNNCC 2 cut(s) 110, 199
BspPI GGATC 2 cut(s) 103, 116
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 53
BssMI GATC 5 cut(s) 32, 55, 85, 108, 240
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 39, 136
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 66, 208
BstF5I GGATG 2 cut(s) 10, 27
BstFNI CGCG 3 cut(s) 146, 167, 232
BstH2I RGCGCY 2 cut(s) 98, 201
BstHHI GCGC 5 cut(s) 97, 167, 180, 200, 232
BstKTI GATC 5 cut(s) 35, 58, 88, 111, 243
BstMBI GATC 5 cut(s) 32, 55, 85, 108, 240
BstMWI GCNNNNNNNGC 2 cut(s) 24, 334
BstNI CCWGG 1 cut(s) 113
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 2 cut(s) 29, 271
BstUI CGCG 3 cut(s) 146, 167, 232
BstV1I GCAGC 2 cut(s) 2, 312
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 2 cut(s) 276, 288
BtsCI GGATG 2 cut(s) 10, 27
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 66, 208
CfoI GCGC 5 cut(s) 97, 167, 180, 200, 232
Cfr13I GGNCC 3 cut(s) 51, 274, 286
CseI GACGC 4 cut(s) 109, 152, 212, 221
CviAII CATG 3 cut(s) 128, 181, 186
CviJI RGCY 6 cut(s) 64, 190, 276, 288, 325, 337
CviKI_1 RGCY 6 cut(s) 64, 190, 276, 288, 325, 337
DinI GGCGCC 1 cut(s) 199
DpnI GATC 5 cut(s) 34, 57, 87, 110, 242
DpnII GATC 5 cut(s) 32, 55, 85, 108, 240
Eco47I GGWCC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaeI CATG 3 cut(s) 131, 184, 189
FaiI YATR 4 cut(s) 129, 182, 187, 227
FatI CATG 3 cut(s) 127, 180, 185
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 2 cut(s) 141, 172
Fnu4HI GCNGC 4 cut(s) 16, 147, 196, 326
FokI GGATG 2 cut(s) 17, 34
Fsp4HI GCNGC 4 cut(s) 16, 147, 196, 326
FspBI CTAG 3 cut(s) 30, 59, 297
GlaI GCGC 5 cut(s) 96, 166, 179, 199, 231
GluI GCNGC 4 cut(s) 16, 147, 196, 326
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 2 cut(s) 98, 201
HaeIII GGCC 2 cut(s) 276, 288
HapII CCGG 1 cut(s) 19
HgaI GACGC 4 cut(s) 109, 152, 212, 221
HhaI GCGC 5 cut(s) 97, 167, 180, 200, 232
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 131, 184, 189
Hin6I GCGC 5 cut(s) 95, 165, 178, 198, 230
HinP1I GCGC 5 cut(s) 95, 165, 178, 198, 230
HincII GTYRAC 2 cut(s) 142, 173
HindII GTYRAC 2 cut(s) 142, 173
HpaII CCGG 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 10, 142, 173, 269
Hpy188I TCNGA 2 cut(s) 55, 240
Hpy188III TCNNGA 2 cut(s) 59, 156
Hpy8I GTNNAC 4 cut(s) 10, 142, 173, 269
Hpy99I CGWCG 3 cut(s) 146, 206, 237
HpyCH4III ACNGT 2 cut(s) 39, 136
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 334
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 131, 184, 189
HspAI GCGC 5 cut(s) 95, 165, 178, 198, 230
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 5 cut(s) 32, 55, 85, 108, 240
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 8 cut(s) 32, 34, 98, 125, 141, 176, 192, 257
Lsp1109I GCAGC 2 cut(s) 2, 312
MaeI CTAG 3 cut(s) 30, 59, 297
MalI GATC 5 cut(s) 34, 57, 87, 110, 242
MboI GATC 5 cut(s) 32, 55, 85, 108, 240
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 3 cut(s) 29, 271, 314
MluCI AATT 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 198
MnlI CCTC 4 cut(s) 71, 95, 205, 300
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 3 cut(s) 146, 167, 232
MwoI GCNNNNNNNGC 2 cut(s) 24, 334
NarI GGCGCC 1 cut(s) 198
NdeII GATC 5 cut(s) 32, 55, 85, 108, 240
NlaIII CATG 3 cut(s) 131, 184, 189
NlaIV GGNNCC 2 cut(s) 110, 199
PkrI GCNGC 4 cut(s) 17, 148, 197, 327
PluTI GGCGCC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 110, 199
PspPI GGNCC 3 cut(s) 51, 274, 286
PsuI RGATCY 1 cut(s) 108
SalI GTCGAC 2 cut(s) 140, 171
SatI GCNGC 4 cut(s) 16, 147, 196, 326
Sau3AI GATC 5 cut(s) 32, 55, 85, 108, 240
Sau96I GGNCC 3 cut(s) 51, 274, 286
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 29, 271, 314
SetI ASST 1 cut(s) 66
SfoI GGCGCC 1 cut(s) 199
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 279
SsiI CCGC 4 cut(s) 68, 146, 167, 195
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 318
SspMI CTAG 3 cut(s) 30, 59, 297
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 39, 136
TaqI TCGA 2 cut(s) 141, 172
TasI AATT 1 cut(s) 279
TauI GCSGC 2 cut(s) 149, 198
TscAI CASTG 1 cut(s) 44
TseI GCWGC 2 cut(s) 15, 325
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 141, 172
XspI CTAG 3 cut(s) 30, 59, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.