pycom12g23390
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
23995234 .. 23997363
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGGCGTTCGCTGGACGTTCGGTCTTCCTGTCCCATAAAGATTGTATAGGAAATGCTTGTATTAGGTTGGGACTTAAAAGTGATGAAAGGCTTCAGAAGGGAAGGATGGTTGGTTTTCATGTGGTTGTGAAATTTTCCTCCCAGAGAAGAAAATCAAGATACTGCCAATTCATTAGTGCTAAAAGAAACTTTTCTGGTTTGGGTTCAAAGCGTTCTTCGCTGCTCTCTAGCAGGACGGAGGAGGCTTTCTCAGAACGAAGCACTAAAACTAGTGAGCCCGAGATGGGACGCGCGATTGATTTGATGATTGAAGAAGTACTGAGTGTTATTAAAGAGTGGAGCCAGTTACATTTCATGAAAGTAGCTGGTTTACTGTTATGCACTTTCATGGTCATGCCATCAGCCAATGCTGTCGATGCTCTCAAAACTTGTGCCTGCTTACTTAAGGAATGCAGGGTAGAACTTGCGAAGTGCATCGGAAACCCATCATGTGCTGCCAATATTGCTTGTTTGCAAACTTGCAATAATCGACCAGATGAGACTGAATGCCAGATTAAATGTGGTGACCTGTTTGAAAACAAAGTCGTAGATGAATTTAATGAATGTGCAGTGTCGCGAAAGAAGTGCGTACCTATGAAATCTGATGTGGGAGAATTTCCTATCCCAGATCCTGCTGCTCTTGTTAAAAGCTTTGATATGTCGAAGTTCAACGGAAAGTGGTTCATTACAAGTGGCTTGAATCCTACCTTCGATGTATTTGATTGCCAATTGCATGAATTCCATACAGAATCTAGCAAACTTGTAGGGAACTTGTCCTGGAGAATAAAAACCCCAGATGGTGGCTTTTTCACTCGATCAGCTGTGCAGAAATTCGTGCAAGACCCAAACCAGCCCGGCGTTCTATACAATCACGACAATGAATATCTTCACTATCAAGATGACTGGTATATTCTATCGTCCAAGATAGAAAACACACCGGATGACTACATTTTTGTGTACTACCGTGGAAGAAATGATGCATGGGATGGATATGGTGGTGCTGTTGTATACACTAGGAGTTCAGTTTTGCCAGAAAGCATTGTTCCCGAACTTGAAAGAGCAGCTAAAAGTGTGGGAAGGGACTTCAGCAAGTTTATCCGAACAGACAATACTTGTGGACCTGAGCCTCCGCTCGTAGAGAGGTTGGAAAAGACAATTGAAGAAGGGGAAAGGACCATTATAGAGGAAGTTAAACAGATAGAAGGGGAAGTTGAAAAGGTTGAACAAACTGAGTTGACATTGTTTCAAAAGTTACTGGAAGGGTTTAACGTGCTTAAACAAGACGAGGAGAATTTCTTGAGAGGTCTTTCGAAAGAAGAGATGGATCTGCTGAGCGAGCTAAAAATGGAAGCTGGTGAAGTAGGAAAACTGTTTGGAAAAACTCTTCCGCTGAGGAAGCTAAGATAG

Protein Analysis

482

Amino Acids

54.46

Weight (kDa)

5.98

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VDE PF07137 144 - 383 2.6e-110 VDE lipocalin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 1047
AccII CGCG 3 cut(s) 291, 293, 616
AciI CCGC 2 cut(s) 1169, 1427
AclWI GGATC 2 cut(s) 662, 1371
AcsI RAATTY 6 cut(s) 131, 593, 653, 776, 869, 1330
AcuI CTGAAG 2 cut(s) 77, 1108
AfaI GTAC 3 cut(s) 318, 630, 998
AfiI CCNNNNNNNGG 2 cut(s) 284, 839
AflII CTTAAG 1 cut(s) 443
AhdI GACNNNNNGTC 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 1 cut(s) 815
AluBI AGCT 7 cut(s) 365, 690, 860, 1103, 1378, 1391, 1438
AluI AGCT 7 cut(s) 365, 690, 860, 1103, 1378, 1391, 1438
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 2 cut(s) 662, 1371
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 4 cut(s) 220, 494, 674, 1100
ApoI RAATTY 6 cut(s) 131, 593, 653, 776, 869, 1330
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
Asp700I GAANNNNTTC 3 cut(s) 90, 190, 924
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 1157, 1212
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 2 cut(s) 575, 1406
AsuII TTCGAA 1 cut(s) 1349
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 1157, 1212
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 1430
BbvI GCAGC 4 cut(s) 207, 481, 661, 1112
BccI CCATC 7 cut(s) 100, 277, 406, 493, 830, 1019, 1354
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BciT130I CCWGG 1 cut(s) 817
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 1 cut(s) 533
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 4 cut(s) 228, 270, 792, 1053
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 4 cut(s) 221, 495, 675, 1101
BlpI GCTNAGC 1 cut(s) 1370
BlsI GCNGC 4 cut(s) 222, 496, 676, 1102
BmcAI AGTACT 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 817, 894
Bme18I GGWCC 2 cut(s) 1157, 1212
BmeRI GACNNNNNGTC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 1157, 1212
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 2 cut(s) 817, 894
BmsI GCATC 3 cut(s) 406, 483, 1006
BpiI GAAGAC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 838
Bpu10I CCTNAGC 2 cut(s) 1161, 1430
Bpu1102I GCTNAGC 1 cut(s) 1370
Bpu14I TTCGAA 1 cut(s) 1349
BpuEI CTTGAG 1 cut(s) 1357
BpuMI CCSGG 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 1003
BsaWI WCCGGW 1 cut(s) 976
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 839
Bse1I ACTGG 3 cut(s) 343, 947, 1299
BseBI CCWGG 1 cut(s) 817
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 3 cut(s) 111, 985, 1030
BseLI CCNNNNNNNGG 2 cut(s) 284, 839
BseMII CTCAG 6 cut(s) 264, 311, 1152, 1260, 1361, 1421
BseNI ACTGG 3 cut(s) 343, 947, 1299
BseRI GAGGAG 2 cut(s) 254, 1340
BseXI GCAGC 4 cut(s) 207, 481, 661, 1112
BsgI GTGCAG 2 cut(s) 627, 884
Bsh1236I CGCG 3 cut(s) 291, 293, 616
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 894, 977
BslFI GGGAC 4 cut(s) 16, 84, 300, 1133
BslI CCNNNNNNNGG 2 cut(s) 284, 839
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 4 cut(s) 16, 84, 300, 1133
BsmI GAATGC 2 cut(s) 455, 551
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 1349
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 667, 854, 1363
Bsp1720I GCTNAGC 1 cut(s) 1370
Bsp68I TCGCGA 1 cut(s) 616
BspACI CCGC 2 cut(s) 1169, 1427
BspCNI CTCAG 6 cut(s) 263, 312, 1153, 1261, 1362, 1422
BspFNI CGCG 3 cut(s) 291, 293, 616
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 2 cut(s) 662, 1371
BspT104I TTCGAA 1 cut(s) 1349
BspTI CTTAAG 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 1171
BsrI ACTGG 3 cut(s) 343, 947, 1299
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 3 cut(s) 667, 854, 1363
BssNAI GTATAC 1 cut(s) 1048
Bst1107I GTATAC 1 cut(s) 1048
Bst2UI CCWGG 1 cut(s) 817
Bst4CI ACNGT 3 cut(s) 375, 1004, 1410
Bst6I CTCTTC 2 cut(s) 1350, 1428
BstAFI CTTAAG 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 1349
BstC8I GCNNGC 2 cut(s) 436, 1376
BstDEI CTNAG 7 cut(s) 250, 320, 1161, 1269, 1370, 1430, 1439
BstDSI CCRYGG 1 cut(s) 1003
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 3 cut(s) 111, 985, 1030
BstFNI CGCG 3 cut(s) 291, 293, 616
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 670, 857, 1366
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 3 cut(s) 667, 854, 1363
BstMWI GCNNNNNNNGC 5 cut(s) 217, 416, 503, 1375, 1435
BstNI CCWGG 1 cut(s) 817
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 815, 892
BstUI CGCG 3 cut(s) 291, 293, 616
BstV1I GCAGC 4 cut(s) 207, 481, 661, 1112
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 667, 1363
BstYI RGATCY 2 cut(s) 667, 1363
BstZ17I GTATAC 1 cut(s) 1048
BtgI CCRYGG 1 cut(s) 1003
BtsCI GGATG 3 cut(s) 111, 985, 1030
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
BtuMI TCGCGA 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 436, 1376
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 1157, 1212
CseI GACGC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 317, 629, 997
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 7 cut(s) 119, 355, 388, 394, 489, 773, 1020
CviQI GTAC 3 cut(s) 317, 629, 997
DdeI CTNAG 7 cut(s) 250, 320, 1161, 1269, 1370, 1430, 1439
DpnI GATC 3 cut(s) 669, 856, 1365
DpnII GATC 3 cut(s) 667, 854, 1363
DriI GACNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 1350, 1428
Eam1105I GACNNNNNGTC 1 cut(s) 20
EarI CTCTTC 2 cut(s) 1350, 1428
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 1157, 1212
Eco57I CTGAAG 2 cut(s) 77, 1108
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 815
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 7 cut(s) 122, 358, 391, 397, 492, 776, 1023
FaqI GGGAC 4 cut(s) 16, 84, 300, 1133
FatI CATG 7 cut(s) 118, 354, 387, 393, 488, 772, 1019
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 4 cut(s) 221, 495, 675, 1101
FokI GGATG 3 cut(s) 118, 992, 1037
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 221, 495, 675, 1101
FspBI CTAG 4 cut(s) 228, 270, 792, 1053
GlaI GCGC 1 cut(s) 292
GluI GCNGC 4 cut(s) 221, 495, 675, 1101
GsuI CTGGAG 1 cut(s) 838
HapII CCGG 2 cut(s) 894, 977
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 293
Hin1II CATG 7 cut(s) 122, 358, 391, 397, 492, 776, 1023
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 1275
HindII GTYRAC 1 cut(s) 1275
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 2 cut(s) 739, 788
HpaII CCGG 2 cut(s) 894, 977
HphI GGTGA 2 cut(s) 575, 1406
Hpy166II GTNNAC 5 cut(s) 371, 997, 1048, 1157, 1275
Hpy188I TCNGA 5 cut(s) 96, 253, 479, 643, 1139
Hpy188III TCNNGA 7 cut(s) 156, 355, 615, 911, 935, 1085, 1336
Hpy8I GTNNAC 5 cut(s) 371, 997, 1048, 1157, 1275
HpyAV CCTTC 7 cut(s) 91, 96, 757, 1110, 1196, 1235, 1292
HpyCH4III ACNGT 3 cut(s) 375, 1004, 1410
HpyCH4IV ACGT 2 cut(s) 16, 1308
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 416, 503, 1375, 1435
HpyF3I CTNAG 7 cut(s) 250, 320, 1161, 1269, 1370, 1430, 1439
HpySE526I ACGT 2 cut(s) 16, 1308
Hsp92II CATG 7 cut(s) 122, 358, 391, 397, 492, 776, 1023
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 667, 854, 1363
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 4 cut(s) 207, 481, 661, 1112
LweI GCATC 3 cut(s) 406, 483, 1006
MaeI CTAG 4 cut(s) 228, 270, 792, 1053
MaeII ACGT 2 cut(s) 16, 1308
MaeIII GTNAC 3 cut(s) 345, 563, 1290
MalI GATC 3 cut(s) 669, 856, 1365
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 3 cut(s) 667, 854, 1363
MboII GAAGA 9 cut(s) 16, 159, 207, 323, 917, 1020, 1211, 1367, 1415
MfeI CAATTG 2 cut(s) 767, 1194
MflI RGATCY 2 cut(s) 667, 1363
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 9 cut(s) 131, 167, 593, 653, 767, 776, 869, 1194, 1330
MmeI TCCRAC 1 cut(s) 1164
MnlI CCTC 9 cut(s) 148, 232, 235, 1173, 1176, 1216, 1318, 1334, 1425
Mph1103I ATGCAT 1 cut(s) 1021
MroXI GAANNNNTTC 3 cut(s) 90, 190, 924
MseI TTAA 9 cut(s) 75, 330, 444, 555, 597, 684, 1230, 1305, 1314
MslI CAYNNNNRTG 4 cut(s) 386, 392, 915, 992
MspA1I CMGCKG 2 cut(s) 860, 1429
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 2 cut(s) 894, 977
MspR9I CCNGG 2 cut(s) 817, 894
MunI CAATTG 2 cut(s) 767, 1194
Mva1269I GAATGC 2 cut(s) 455, 551
MvaI CCWGG 1 cut(s) 817
MvnI CGCG 3 cut(s) 291, 293, 616
MwoI GCNNNNNNNGC 5 cut(s) 217, 416, 503, 1375, 1435
NciI CCSGG 1 cut(s) 894
NdeII GATC 3 cut(s) 667, 854, 1363
NlaIII CATG 7 cut(s) 122, 358, 391, 397, 492, 776, 1023
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 563
NruI TCGCGA 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 1021
NspV TTCGAA 1 cut(s) 1349
PagI TCATGA 1 cut(s) 354
PctI GAATGC 2 cut(s) 455, 551
PdmI GAANNNNTTC 3 cut(s) 90, 190, 924
PfeI GAWTC 2 cut(s) 739, 788
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 815
PkrI GCNGC 4 cut(s) 222, 496, 676, 1102
Psp6I CCWGG 1 cut(s) 815
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 815
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 2 cut(s) 1157, 1212
PsrI GAACNNNNNNTAC 2 cut(s) 1132, 1164
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 667, 1363
PvuII CAGCTG 1 cut(s) 860
RruI TCGCGA 1 cut(s) 616
RsaI GTAC 3 cut(s) 318, 630, 998
RsaNI GTAC 3 cut(s) 317, 629, 997
RseI CAYNNNNRTG 4 cut(s) 386, 392, 915, 992
SaqAI TTAA 9 cut(s) 75, 330, 444, 555, 597, 684, 1230, 1305, 1314
SatI GCNGC 4 cut(s) 221, 495, 675, 1101
Sau3AI GATC 3 cut(s) 667, 854, 1363
Sau96I GGNCC 2 cut(s) 1157, 1212
ScaI AGTACT 1 cut(s) 318
ScrFI CCNGG 2 cut(s) 817, 894
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 3 cut(s) 406, 483, 1006
SfuI TTCGAA 1 cut(s) 1349
SinI GGWCC 2 cut(s) 1157, 1212
SmiMI CAYNNNNRTG 4 cut(s) 386, 392, 915, 992
SmlI CTYRAG 2 cut(s) 443, 1336
SmoI CTYRAG 2 cut(s) 443, 1336
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 9 cut(s) 131, 167, 593, 653, 767, 776, 869, 1194, 1330
SsiI CCGC 2 cut(s) 1169, 1427
SspI AATATT 1 cut(s) 502
SspMI CTAG 4 cut(s) 228, 270, 792, 1053
StyD4I CCNGG 2 cut(s) 815, 892
TaaI ACNGT 3 cut(s) 375, 1004, 1410
TaiI ACGT 2 cut(s) 19, 1311
TaqI TCGA 6 cut(s) 414, 529, 701, 750, 853, 1349
TaqII GACCGA 1 cut(s) 10
TasI AATT 9 cut(s) 131, 167, 593, 653, 767, 776, 869, 1194, 1330
TatI WGTACW 2 cut(s) 316, 996
TfiI GAWTC 2 cut(s) 739, 788
Tru1I TTAA 9 cut(s) 75, 330, 444, 555, 597, 684, 1230, 1305, 1314
Tru9I TTAA 9 cut(s) 75, 330, 444, 555, 597, 684, 1230, 1305, 1314
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 4 cut(s) 220, 494, 674, 1100
Tsp45I GTSAC 1 cut(s) 563
TspGWI ACGGA 2 cut(s) 251, 726
TspRI CASTG 1 cut(s) 615
Van91I CCANNNNNTGG 1 cut(s) 839
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 1157, 1212
XapI RAATTY 6 cut(s) 131, 593, 653, 776, 869, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 1047
XmnI GAANNNNTTC 3 cut(s) 90, 190, 924
XspI CTAG 4 cut(s) 228, 270, 792, 1053
ZrmI AGTACT 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.