Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015312

Physical Location & Seq

Genomic Coordinates Forward (+)

826844 .. 830259

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

ATGGAGAACTTCAATCCAGTTCAGTTTTTTCTTCATCTTTCTGCAGTACTTGTATTGGTAGGACTTCACCTTGTTTCTGTTTCCACAGCTGACCAACAGGTCACTGCATCGATCAAAACCGACGCAGTTTCTCTTCTCAACTTCAAAAAGATGATTGACAAGGACCCGAATGGTGTGTTGTCCGGTTGGAAGCTCGGCACCAGTCCATGCAGCTGGTATGGAGTTACATGCTCCATGAACCGGGCAACTCAGCTCGATCTTACCAGTTGTTCTCTTGTTGGTACAATCTCTTTTGAACCCTTGGCCTCTCTAGACATGCTTTCTGTCTTAAATCTGCCTTCCAATAAATTCAGTGTAAACGCTACCTCTTTGCTTCAACTCCCATCTGCTTTGAAACAACTCGATTTATCGTTCAACGCACTTTTCGGTGTTCTTCCTGAGGGTGTTTCCTCAAAATGTCCAAATCTTGTCTCTGTGAATCTTGCTTTTAACAACTTAACCGGCCCTCCACCCAATGATCTCTTACTGCATTCCGACAAACTTCAAACTCTCGACATCTCTTACAACAATTTCACCGGGTCGATTTCTGGTCTGATAATTGAGAAATATTCTTGCCCTTCTTTGTTGCAGCTCGATTTGTCAGGAAACCGTATAACGGGTTCCATTCCCATGTCCTTGGCAAACTGCACCAGTCTCAAAACTATGAGTTTATCGACCAACAATGTGACAGGAAATGCATGCGGTTCGCTTGTCGAACTTAAGCTTTCCTTTAACAACATTACCGGCCCAATTCCAGCCTCTTTCTCCTCGTGTTCTTTGCTGGAGGCTCTCGATCTCTCCAACAACAACTTAACAGGCCCCTTGCCAGATTCTATCTTTCAGAACCTCACCTCCTTACAGAGCTTGGTGTTGAGGAATAACATCATCACTGGATCGCTTCCGGGCTCCATATCAGCTTGCAAGAGCCTACAGGTTATAGACTTGAGCTCTAATAAAATATCTGGCGTCATCCCACCAGATATATGTCCCGGGGCCTCCTCACTTGAGGAGCTGAGAATGCCGGACAACCTCATTGTAGGCGAAATTCCTGCTCAACTATCACAATGTTCTCAGCTGACGACGATCGATTTTAGTTTGAACTATCTCAACGGCTCAATTCCAGCTGAGCTCGGGAAGCTGGAGAATTTGCAGCAGCTAATAGCATGGTACAATGGCTTAGAGGGGAAAATCCCACCAGACTTGGGAAAGTGCAAGAATCTCAAGGATATTATTCTCAACAATAACCATCTGAGTGGTGAAATCCCAGTTGAATTGTTCAGCTGCAGCAATCTTGAATGGATATCACTCACAAGCAATAAACTCAGTGGTGAAGTCCCAAAGGAATTTGGCCTTTTGACACGACTGGCGGTTCTACAACTTGGGAACAATAGCTTGAGTGGCAAGATACCAGGAGAGCTTGGAAATTGCAGCAGCTTGGTTTGGTTGGATTTGAACAGCAACAAACTCACCGGAGAGATCCCGCCTCGACTTGGGAGGCAGATCGGGGCCAAGGCACTGAGTGGAATTCTCTCCGGCAATACTTTGGTGTTTGTACGGAATGTGGGGAACTCTTGTAAAGGAGTGGGAGGCTTATTAGAGTTTGCGGGAATCCGACCTGAAAGGCTTCAACAGGACCCAACATTGAGGACTTGTGATTTCGCCAGATTGTACTCTGGCCCTGTCCTGAGTCTCTTTACAAAATACCAAACACTGGAGTATCTTGATCTATCTTACAATCAGCTTCGCGGGAAAATCCCGGAAGAAATGGGGGACATGATTGCATTGCAAGTTCTTGAGTTATCCCACAACCAGTTATCGGGTGAGATTCCTGCATCACTTGGCCAGCTCAAAGATTTAGGGGTGTTTGATGCATCACACAACAGACTGCAGGGTCACATCCCTGATTCATTGGAGAACCTATCTTTCTTGGTGCAAATTGATTTGTCCAACAATGAATTAACTGGCGAAATTCCCTCGAGGGGTCAGCTGAGTACGCTTCCTGCTACCCAGTATGCTAACAACCCTGGACTCTGTGGAGTCCCATTGCCTAATTGCCAGAGCAGCAGTGACCAACCAGACACCACTCCAAGCGATCAGGATGAAGGCAAACGAAGCCGAAGGCCATCGGTTGCATCATGGGCTAACAGCATTGTTGTGGGGGTTCTGATTTCTCTTGCTTCTGTCTGTGTTCTGGTTGTGTGGGCAATTGCAATGCGGACAAGGCGAAAGGAAGCGAAGGAGGTGAAGATGCTTAATCGCTTGCAAGCATCCCATGCGGCATGGAAGATTGACAAAGAGAAAGAACCCTTGAGCATTAATGTTGCCACTTTCCAAAGACAGTTGAGGAAGCTCAAGTTCTCCCAACTCATTGAGGCAACCAATGGCTTCTCGGCAGATAGTCTTATAGGGTGTGGAGGTTTTGGGGAAGTGTTCAAGGCAACGCTGAAAGATGGATCAAGTGTTGCAATCAAGAAACTTATACGGCTGAGCTGCCAAGGTGACCGTGAATTCATGGCCGAGATGGAAACTCTGGGGAAGATCAAGCATAGGAATCTCGTGCCTTTATTGGGTTATTGTAAAATTGGTGAAGAGAGGCTGCTAGTATATGAATTCATGGAGCACGGAAGCCTCGAAGAAATGCTCCATGGAAGAACAAAGACACGTGACAGGCGGATGCTAACATGGGAGGAAAGAAAAAAGATTGCAAGAGGTGCAGCGAAGGGACTGTGTTTCCTCCACCACAATTGCATCCCTCACATCATACACAGAGACATGAAGTCAAGCAATGTATTATTGGACAGTGAATTGGAAGCAAGGGTTTCTGATTTCGGAATGGCAAGGCTCATAAGTGCTCTTGACACACACTTGAGTGTAAGCACTCTTGCAGGCACTCCTGGTTATGTTCCGCCTGAATACTACCAGAGTTTCCGCTGCACTGCCAAGGGTGACGTCTACTCATTTGGGGTTGTCCTCTTGGAGCTTGTGACTGGAAAACGCCCAACAGACAAGGATGATTTCGGGGACACTAACTTGGTCGGATGGGCGAAGATGAAGGTGAGAGAAGGGAAGCAGATGGAAGTGATAGACCAAGAGTTACTTTCGGTAACTAAAGGAACTGATGAAGCAGAAGCAGAAGAAGTGAAAGAGATGGTGAGGTATTTAGAGGTGACACTTCAATGTGTTGACGACTTCCCATCAAAGAGGCCTAACATGTTGCAGGTGGTGGCCATGCTGAGAGAGCTGATATCTGGATCAGCAAGTGGAAGCAGTAATAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1107

Amino Acids

120.29

Weight (kDa)

5.99

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 78	6.5e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	249 - 307	2.1e-08	Leucine rich repeat
LRR_14	PF23598	266 - 401	4.8e-07	Leucine-rich repeat region
LRR_8	PF13855	288 - 333	9.5e-08	Leucine rich repeat
LRR_4	PF12799	297 - 334	1.8e-06	Leucine Rich repeats (2 copies)
Island	PF20141	519 - 579	8.8e-19	Brassinosteroid receptor island domain
LRR_14	PF23598	575 - 662	5.2e-07	Leucine-rich repeat region
LRR_8	PF13855	577 - 618	2.8e-06	Leucine rich repeat
Pkinase	PF00069	811 - 1088	1.4e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	812 - 1090	4.9e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01950
fragaria_vesca	FvH4_5g27210
malus_domestica	MD13G1014800.v1.1
prunus_persica	Prupe.1G338800_v2.0.a1
pyrus_communis	pycom13g01260 pycom16g01160
rosa_chinensis	RchiOBHm_Chr7g0218311
rosa_laevigata	RLG00000002379
rosa_multiflora	Rmu_sc0009526.1_g000007
rosa_roxburghii	Rroxscaffold_3G00241060
rosa_rugosa	Rorug07G0176700
rosa_samantha	Rh7AG318000 Rh7BG309700 Rh7CG334800 Rh7DG317000
rosa_wichuraiana	Rw7G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3247
AasI	GACNNNNNNGTC	2 cut(s)	98, 1929
AatII	GACGTC	1 cut(s)	2991
AbsI	CCTCGAGG	1 cut(s)	2014
Acc36I	ACCTGC	1 cut(s)	3247
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	1750
AccI	GTMKAC	1 cut(s)	2991
AccII	CGCG	1 cut(s)	1785
AclWI	GGATC	4 cut(s)	940, 1510, 2500, 3298
AcoI	YGGCCR	3 cut(s)	1879, 2553, 3264
AcsI	RAATTY	8 cut(s)	347, 1083, 1183, 1382, 1563, 2007, 2546, 2648
AcvI	CACGTG	1 cut(s)	2702
AcyI	GRCGYC	2 cut(s)	1005, 2988
AdeI	CACNNNGTG	1 cut(s)	1559
AfaI	GTAC	6 cut(s)	48, 283, 1208, 1593, 1709, 2032
AfeI	AGCGCT	1 cut(s)	3316
AfiI	CCNNNNNNNGG	8 cut(s)	240, 655, 1241, 1529, 1750, 1855, 2018, 2606
AflII	CTTAAG	1 cut(s)	758
AflIII	ACRYGT	2 cut(s)	2699, 3249
AhdI	GACNNNNNGTC	1 cut(s)	2815
AjnI	CCWGG	3 cut(s)	1447, 2062, 2932
AleI	CACNNNNGTG	1 cut(s)	2907
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
Alw21I	GWGCWC	4 cut(s)	989, 1170, 2661, 2893
Alw26I	GTCTC	4 cut(s)	475, 698, 1733, 2802
AlwI	GGATC	4 cut(s)	940, 1510, 2500, 3298
Ama87I	CYCGRG	3 cut(s)	1028, 1169, 2014
Aor51HI	AGCGCT	1 cut(s)	3316
ApoI	RAATTY	8 cut(s)	347, 1083, 1183, 1382, 1563, 2007, 2546, 2648
AseI	ATTAAT	1 cut(s)	2355
Asp700I	GAANNNNTTC	1 cut(s)	1662
AspLEI	GCGC	1 cut(s)	3317
AspS9I	GGNCC	8 cut(s)	163, 503, 785, 857, 1032, 1545, 1672, 1715
AsuC2I	CCSGG	6 cut(s)	242, 577, 942, 1029, 1030, 1796
AvaI	CYCGRG	3 cut(s)	1028, 1169, 2014
AvaII	GGWCC	2 cut(s)	163, 1672
AxyI	CCTNAGG	1 cut(s)	438
BaeI	ACNNNNGTAYC	2 cut(s)	1739, 1772
BalI	TGGCCA	2 cut(s)	1881, 3266
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	947, 989, 1170
BauI	CACGAG	2 cut(s)	808, 2594
BbrPI	CACGTG	1 cut(s)	2702
Bbv12I	GWGCWC	4 cut(s)	989, 1170, 2661, 2893
BccI	CCATC	9 cut(s)	391, 1293, 2170, 2483, 2554, 3072, 3106, 3181, 3241
BceAI	ACGGC	2 cut(s)	1165, 2537
BcgI	CGANNNNNNTGC	4 cut(s)	726, 760, 1070, 1104
BciT130I	CCWGG	3 cut(s)	1449, 2064, 2934
BcnI	CCSGG	6 cut(s)	242, 577, 942, 1029, 1030, 1796
BcoDI	GTCTC	4 cut(s)	475, 698, 1733, 2802
BfaI	CTAG	2 cut(s)	311, 2639
BfmI	CTRYAG	4 cut(s)	42, 968, 1321, 1925
BfoI	RGCGCY	1 cut(s)	3318
BfrI	CTTAAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	3247
BlpI	GCTNAGC	2 cut(s)	1164, 2525
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	9 cut(s)	242, 577, 942, 1029, 1030, 1449, 1796, 2064, 2934
Bme18I	GGWCC	2 cut(s)	163, 1672
BmeRI	GACNNNNNGTC	1 cut(s)	2815
BmeT110I	CYCGRG	3 cut(s)	1028, 1169, 2014
BmgT120I	GGNCC	8 cut(s)	163, 503, 785, 857, 1032, 1545, 1672, 1715
BmiI	GGNNCC	8 cut(s)	165, 199, 661, 859, 946, 1033, 1546, 1674
BmrFI	CCNGG	9 cut(s)	242, 577, 942, 1029, 1030, 1449, 1796, 2064, 2934
BmrI	ACTGGG	2 cut(s)	1298, 2041
BmsI	GCATC	9 cut(s)	116, 1880, 1897, 1919, 2180, 2277, 2315, 2703, 2796
BmuI	ACTGGG	2 cut(s)	1298, 2041
BpmI	CTGGAG	3 cut(s)	842, 1199, 1772
Bpu1102I	GCTNAGC	2 cut(s)	1164, 2525
BpuEI	CTTGAG	8 cut(s)	1003, 1064, 1244, 1453, 1853, 2368, 2375, 2926
BpuMI	CCSGG	6 cut(s)	242, 577, 942, 1029, 1030, 1796
Bsa29I	ATCGAT	2 cut(s)	110, 1125
BsaAI	YACGTR	1 cut(s)	2702
BsaHI	GRCGYC	2 cut(s)	1005, 2988
BsaJI	CCNNGG	9 cut(s)	300, 675, 1028, 1029, 1548, 2062, 2533, 2683, 2979
BsaWI	WCCGGW	2 cut(s)	182, 1508
BsaXI	ACNNNNNCTCC	4 cut(s)	490, 520, 875, 905
Bsc4I	CCNNNNNNNGG	8 cut(s)	240, 655, 1241, 1529, 1750, 1855, 2018, 2606
Bse118I	RCCGGY	2 cut(s)	500, 782
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	4 cut(s)	1820, 2081, 2256, 2830
BseBI	CCWGG	3 cut(s)	1449, 2064, 2934
BseCI	ATCGAT	2 cut(s)	110, 1125
BseDI	CCNNGG	9 cut(s)	300, 675, 1028, 1029, 1548, 2062, 2533, 2683, 2979
BseGI	GGATG	8 cut(s)	1008, 1935, 2143, 2306, 2718, 2787, 3055, 3083
BseLI	CCNNNNNNNGG	8 cut(s)	240, 655, 1241, 1529, 1750, 1855, 2018, 2606
BseMI	GCAATG	4 cut(s)	1820, 2081, 2256, 2830
BseRI	GAGGAG	3 cut(s)	796, 1027, 1061
BsgI	GTGCAG	3 cut(s)	670, 2772, 2956
Bsh1236I	CGCG	1 cut(s)	1785
Bsh1285I	CGRYCG	1 cut(s)	1125
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	2 cut(s)	110, 1125
BsiEI	CGRYCG	1 cut(s)	1125
BsiHKAI	GWGCWC	4 cut(s)	989, 1170, 2661, 2893
BsiHKCI	CYCGRG	3 cut(s)	1028, 1169, 2014
BslFI	GGGAC	6 cut(s)	1011, 1358, 1823, 2063, 2775, 3074
BslI	CCNNNNNNNGG	8 cut(s)	240, 655, 1241, 1529, 1750, 1855, 2018, 2606
BsmAI	GTCTC	4 cut(s)	475, 698, 1733, 2802
BsmFI	GGGAC	6 cut(s)	1011, 1358, 1823, 2063, 2775, 3074
BsmI	GAATGC	2 cut(s)	529, 1062
BsoBI	CYCGRG	3 cut(s)	1028, 1169, 2014
Bsp1286I	GDGCHC	5 cut(s)	947, 989, 1170, 2661, 2893
Bsp1720I	GCTNAGC	2 cut(s)	1164, 2525
Bsp19I	CCATGG	1 cut(s)	2683
BspDI	ATCGAT	2 cut(s)	110, 1125
BspFNI	CGCG	1 cut(s)	1785
BspLI	GGNNCC	8 cut(s)	165, 199, 661, 859, 946, 1033, 1546, 1674
BspMAI	CTGCAG	3 cut(s)	46, 1325, 1929
BspMI	ACCTGC	1 cut(s)	3247
BspPI	GGATC	4 cut(s)	940, 1510, 2500, 3298
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	758
BsrDI	GCAATG	4 cut(s)	1820, 2081, 2256, 2830
BsrFI	RCCGGY	2 cut(s)	500, 782
BssAI	RCCGGY	2 cut(s)	500, 782
BssECI	CCNNGG	9 cut(s)	300, 675, 1028, 1029, 1548, 2062, 2533, 2683, 2979
BssNI	GRCGYC	2 cut(s)	1005, 2988
BssSI	CACGAG	2 cut(s)	808, 2594
BssT1I	CCWWGG	6 cut(s)	300, 675, 1548, 2533, 2683, 2979
Bst2BI	CACGAG	2 cut(s)	808, 2594
Bst2UI	CCWGG	3 cut(s)	1449, 2064, 2934
Bst4CI	ACNGT	5 cut(s)	650, 2379, 2543, 2766, 2840
Bst6I	CTCTTC	2 cut(s)	138, 2622
BstACI	GRCGYC	2 cut(s)	1005, 2988
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	2 cut(s)	2312, 2750
BstBAI	YACGTR	1 cut(s)	2702
BstC8I	GCNNGC	6 cut(s)	739, 958, 1883, 2300, 2304, 2926
BstDSI	CCRYGG	1 cut(s)	2683
BstEII	GGTNACC	1 cut(s)	2537
BstF5I	GGATG	8 cut(s)	1008, 1935, 2143, 2306, 2718, 2787, 3055, 3083
BstFNI	CGCG	1 cut(s)	1785
BstH2I	RGCGCY	1 cut(s)	3318
BstHHI	GCGC	1 cut(s)	3317
BstMAI	GTCTC	4 cut(s)	475, 698, 1733, 2802
BstMCI	CGRYCG	1 cut(s)	1125
BstNI	CCWGG	3 cut(s)	1449, 2064, 2934
BstNSI	RCATGY	4 cut(s)	231, 319, 741, 3253
BstPI	GGTNACC	1 cut(s)	2537
BstSCI	CCNGG	9 cut(s)	240, 575, 940, 1027, 1028, 1447, 1794, 2062, 2932
BstSFI	CTRYAG	4 cut(s)	42, 968, 1321, 1925
BstUI	CGCG	1 cut(s)	1785
BstX2I	RGATCY	1 cut(s)	1515
BstXI	CCANNNNNNTGG	3 cut(s)	213, 676, 1292
BstYI	RGATCY	1 cut(s)	1515
Bsu15I	ATCGAT	2 cut(s)	110, 1125
Bsu36I	CCTNAGG	1 cut(s)	438
BsuTUI	ATCGAT	2 cut(s)	110, 1125
BtgI	CCRYGG	1 cut(s)	2683
BtsCI	GGATG	8 cut(s)	1008, 1935, 2143, 2306, 2718, 2787, 3055, 3083
BtsI	GCAGTG	3 cut(s)	102, 2110, 2973
BtsIMutI	CAGTG	9 cut(s)	102, 358, 927, 1369, 1553, 1748, 2110, 2845, 2973
BveI	ACCTGC	1 cut(s)	3247
Cac8I	GCNNGC	6 cut(s)	739, 958, 1883, 2300, 2304, 2926
CfoI	GCGC	1 cut(s)	3317
Cfr10I	RCCGGY	2 cut(s)	500, 782
Cfr13I	GGNCC	8 cut(s)	163, 503, 785, 857, 1032, 1545, 1672, 1715
Cfr9I	CCCGGG	1 cut(s)	1028
ClaI	ATCGAT	2 cut(s)	110, 1125
CseI	GACGC	2 cut(s)	131, 994
Csp6I	GTAC	6 cut(s)	47, 282, 1207, 1592, 1708, 2031
CspCI	CAANNNNNGTGG	4 cut(s)	1221, 1256, 2765, 2800
CviQI	GTAC	6 cut(s)	47, 282, 1207, 1592, 1708, 2031
DraIII	CACNNNGTG	1 cut(s)	1559
DrdI	GACNNNNNNGTC	2 cut(s)	98, 1929
DriI	GACNNNNNGTC	1 cut(s)	2815
DseDI	GACNNNNNNGTC	2 cut(s)	98, 1929
EaeI	YGGCCR	3 cut(s)	1879, 2553, 3264
Eam1104I	CTCTTC	2 cut(s)	138, 2622
Eam1105I	GACNNNNNGTC	1 cut(s)	2815
EarI	CTCTTC	2 cut(s)	138, 2622
EciI	GGCGGA	2 cut(s)	2725, 2934
Ecl136II	GAGCTC	2 cut(s)	987, 1168
Eco130I	CCWWGG	6 cut(s)	300, 675, 1548, 2533, 2683, 2979
Eco147I	AGGCCT	1 cut(s)	3244
Eco24I	GRGCYC	3 cut(s)	947, 989, 1170
Eco32I	GATATC	2 cut(s)	1341, 3285
Eco47I	GGWCC	2 cut(s)	163, 1672
Eco47III	AGCGCT	1 cut(s)	3316
Eco53kI	GAGCTC	2 cut(s)	987, 1168
Eco72I	CACGTG	1 cut(s)	2702
Eco81I	CCTNAGG	1 cut(s)	438
Eco88I	CYCGRG	3 cut(s)	1028, 1169, 2014
Eco91I	GGTNACC	1 cut(s)	2537
EcoICRI	GAGCTC	2 cut(s)	987, 1168
EcoO109I	RGGNCCY	4 cut(s)	163, 857, 1032, 1672
EcoO65I	GGTNACC	1 cut(s)	2537
EcoRI	GAATTC	3 cut(s)	1563, 2546, 2648
EcoRII	CCWGG	3 cut(s)	1447, 2062, 2932
EcoRV	GATATC	2 cut(s)	1341, 3285
EcoT14I	CCWWGG	6 cut(s)	300, 675, 1548, 2533, 2683, 2979
EcoT22I	ATGCAT	2 cut(s)	739, 1912
EcoT38I	GRGCYC	3 cut(s)	947, 989, 1170
ErhI	CCWWGG	6 cut(s)	300, 675, 1548, 2533, 2683, 2979
FalI	AAGNNNNNCTT	4 cut(s)	752, 784, 3120, 3152
FaqI	GGGAC	6 cut(s)	1011, 1358, 1823, 2063, 2775, 3074
FauI	CCCGC	3 cut(s)	1527, 1636, 1778
FblI	GTMKAC	1 cut(s)	2991
FokI	GGATG	8 cut(s)	995, 1922, 2150, 2293, 2725, 2774, 3062, 3090
FriOI	GRGCYC	3 cut(s)	947, 989, 1170
FspBI	CTAG	2 cut(s)	311, 2639
GlaI	GCGC	1 cut(s)	3316
GsuI	CTGGAG	3 cut(s)	842, 1199, 1772
HaeII	RGCGCY	1 cut(s)	3318
HgaI	GACGC	2 cut(s)	131, 994
HhaI	GCGC	1 cut(s)	3317
Hin1I	GRCGYC	2 cut(s)	1005, 2988
Hin6I	GCGC	1 cut(s)	3315
HinP1I	GCGC	1 cut(s)	3315
HincII	GTYRAC	1 cut(s)	3223
HindII	GTYRAC	1 cut(s)	3223
HindIII	AAGCTT	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	358, 2992, 3223
Hpy188I	TCNGA	9 cut(s)	535, 594, 882, 1290, 1652, 2205, 2863, 2870, 3077
Hpy8I	GTNNAC	3 cut(s)	358, 2992, 3223
Hpy99I	CGWCG	2 cut(s)	125, 1123
HpyAV	CCTTC	8 cut(s)	348, 627, 2135, 2151, 2269, 2752, 3085, 3095
HpyCH4III	ACNGT	5 cut(s)	650, 2379, 2543, 2766, 2840
HpyCH4IV	ACGT	2 cut(s)	2701, 2988
HpySE526I	ACGT	2 cut(s)	2701, 2988
Hsp92I	GRCGYC	2 cut(s)	1005, 2988
HspAI	GCGC	1 cut(s)	3315
LmnI	GCTCC	6 cut(s)	236, 950, 1048, 2656, 2685, 3016
LweI	GCATC	9 cut(s)	116, 1880, 1897, 1919, 2180, 2277, 2315, 2703, 2796
MaeI	CTAG	2 cut(s)	311, 2639
MaeII	ACGT	2 cut(s)	2701, 2988
MfeI	CAATTG	2 cut(s)	2244, 2782
MflI	RGATCY	1 cut(s)	1515
MhlI	GDGCHC	5 cut(s)	947, 989, 1170, 2661, 2893
MlsI	TGGCCA	2 cut(s)	1881, 3266
MluNI	TGGCCA	2 cut(s)	1881, 3266
MlyI	GAGTC	3 cut(s)	1735, 2061, 2085
MmeI	TCCRAC	7 cut(s)	167, 558, 864, 1464, 1675, 2010, 3055
Mox20I	TGGCCA	2 cut(s)	1881, 3266
Mph1103I	ATGCAT	2 cut(s)	739, 1912
MroXI	GAANNNNTTC	1 cut(s)	1662
MscI	TGGCCA	2 cut(s)	1881, 3266
MseI	TTAA	9 cut(s)	329, 489, 497, 759, 771, 851, 1997, 2292, 2355
MslI	CAYNNNNRTG	5 cut(s)	668, 1290, 2192, 2907, 3214
Msp20I	TGGCCA	2 cut(s)	1881, 3266
MspA1I	CMGCKG	7 cut(s)	89, 213, 1114, 1163, 1320, 2026, 2970
MspCI	CTTAAG	1 cut(s)	758
MspR9I	CCNGG	9 cut(s)	242, 577, 942, 1029, 1030, 1449, 1796, 2064, 2934
MunI	CAATTG	2 cut(s)	2244, 2782
Mva1269I	GAATGC	2 cut(s)	529, 1062
MvaI	CCWGG	3 cut(s)	1449, 2064, 2934
MvnI	CGCG	1 cut(s)	1785
NciI	CCSGG	6 cut(s)	242, 577, 942, 1029, 1030, 1796
NcoI	CCATGG	1 cut(s)	2683
NlaIV	GGNNCC	8 cut(s)	165, 199, 661, 859, 946, 1033, 1546, 1674
NmeAIII	GCCGAG	3 cut(s)	174, 2408, 2581
NmuCI	GTSAC	9 cut(s)	100, 724, 1931, 2105, 2537, 2702, 2984, 3022, 3205
NsiI	ATGCAT	2 cut(s)	739, 1912
NspI	RCATGY	4 cut(s)	231, 319, 741, 3253
OliI	CACNNNNGTG	1 cut(s)	2907
PaeI	GCATGC	1 cut(s)	741
PaeR7I	CTCGAG	1 cut(s)	2014
PaqCI	CACCTGC	1 cut(s)	3247
PceI	AGGCCT	1 cut(s)	3244
PciI	ACATGT	1 cut(s)	3249
PcsI	WCGNNNNNNNCGW	1 cut(s)	2667
PctI	GAATGC	2 cut(s)	529, 1062
PdmI	GAANNNNTTC	1 cut(s)	1662
PfeI	GAWTC	7 cut(s)	478, 869, 1255, 1647, 1864, 1943, 2590
PflMI	CCANNNNNTGG	1 cut(s)	1750
PfoI	TCCNGGA	1 cut(s)	1794
Ple19I	CGATCG	1 cut(s)	1125
PleI	GAGTC	3 cut(s)	1734, 2061, 2084
PmaCI	CACGTG	1 cut(s)	2702
PmlI	CACGTG	1 cut(s)	2702
PpsI	GAGTC	3 cut(s)	1734, 2061, 2084
Ppu21I	YACGTR	1 cut(s)	2702
PpuMI	RGGWCCY	2 cut(s)	163, 1672
PscI	ACATGT	1 cut(s)	3249
PshBI	ATTAAT	1 cut(s)	2355
Psp124BI	GAGCTC	2 cut(s)	989, 1170
Psp5II	RGGWCCY	2 cut(s)	163, 1672
Psp6I	CCWGG	3 cut(s)	1447, 2062, 2932
PspCI	CACGTG	1 cut(s)	2702
PspEI	GGTNACC	1 cut(s)	2537
PspGI	CCWGG	3 cut(s)	1447, 2062, 2932
PspN4I	GGNNCC	8 cut(s)	165, 199, 661, 859, 946, 1033, 1546, 1674
PspPI	GGNCC	8 cut(s)	163, 503, 785, 857, 1032, 1545, 1672, 1715
PspPPI	RGGWCCY	2 cut(s)	163, 1672
PspXI	VCTCGAGB	1 cut(s)	2014
PsrI	GAACNNNNNNTAC	2 cut(s)	643, 675
PstI	CTGCAG	3 cut(s)	46, 1325, 1929
PsuI	RGATCY	1 cut(s)	1515
PvuI	CGATCG	1 cut(s)	1125
PvuII	CAGCTG	6 cut(s)	89, 213, 1114, 1163, 1320, 2026
RsaI	GTAC	6 cut(s)	48, 283, 1208, 1593, 1709, 2032
RsaNI	GTAC	6 cut(s)	47, 282, 1207, 1592, 1708, 2031
RseI	CAYNNNNRTG	5 cut(s)	668, 1290, 2192, 2907, 3214
SacI	GAGCTC	2 cut(s)	989, 1170
SaqAI	TTAA	9 cut(s)	329, 489, 497, 759, 771, 851, 1997, 2292, 2355
Sau96I	GGNCC	8 cut(s)	163, 503, 785, 857, 1032, 1545, 1672, 1715
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	3 cut(s)	1735, 2061, 2085
ScrFI	CCNGG	9 cut(s)	242, 577, 942, 1029, 1030, 1449, 1796, 2064, 2934
SduI	GDGCHC	5 cut(s)	947, 989, 1170, 2661, 2893
SfaNI	GCATC	9 cut(s)	116, 1880, 1897, 1919, 2180, 2277, 2315, 2703, 2796
SfcI	CTRYAG	4 cut(s)	42, 968, 1321, 1925
Sfr274I	CTCGAG	1 cut(s)	2014
SinI	GGWCC	2 cut(s)	163, 1672
SlaI	CTCGAG	1 cut(s)	2014
SmaI	CCCGGG	1 cut(s)	1030
SmiMI	CAYNNNNRTG	5 cut(s)	668, 1290, 2192, 2907, 3214
SphI	GCATGC	1 cut(s)	741
SseBI	AGGCCT	1 cut(s)	3244
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	2 cut(s)	311, 2639
SstI	GAGCTC	2 cut(s)	989, 1170
StuI	AGGCCT	1 cut(s)	3244
StyD4I	CCNGG	9 cut(s)	240, 575, 940, 1027, 1028, 1447, 1794, 2062, 2932
StyI	CCWWGG	6 cut(s)	300, 675, 1548, 2533, 2683, 2979
TaaI	ACNGT	5 cut(s)	650, 2379, 2543, 2766, 2840
TaiI	ACGT	2 cut(s)	2704, 2991
TatI	WGTACW	2 cut(s)	46, 1707
TauI	GCSGC	1 cut(s)	2318
TfiI	GAWTC	7 cut(s)	478, 869, 1255, 1647, 1864, 1943, 2590
Tru1I	TTAA	9 cut(s)	329, 489, 497, 759, 771, 851, 1997, 2292, 2355
Tru9I	TTAA	9 cut(s)	329, 489, 497, 759, 771, 851, 1997, 2292, 2355
TscAI	CASTG	9 cut(s)	109, 358, 934, 1369, 1560, 1755, 2110, 2845, 2980
TseFI	GTSAC	9 cut(s)	100, 724, 1931, 2105, 2537, 2702, 2984, 3022, 3205
Tsp45I	GTSAC	9 cut(s)	100, 724, 1931, 2105, 2537, 2702, 2984, 3022, 3205
TspGWI	ACGGA	2 cut(s)	1609, 2676
TspMI	CCCGGG	1 cut(s)	1028
TspRI	CASTG	9 cut(s)	109, 358, 934, 1369, 1560, 1755, 2110, 2845, 2980
Van91I	CCANNNNNTGG	1 cut(s)	1750
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	163, 1672
VspI	ATTAAT	1 cut(s)	2355
XapI	RAATTY	8 cut(s)	347, 1083, 1183, 1382, 1563, 2007, 2546, 2648
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	4 cut(s)	231, 319, 741, 3253
XhoI	CTCGAG	1 cut(s)	2014
XmaI	CCCGGG	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	2991
XmnI	GAANNNNTTC	1 cut(s)	1662
XspI	CTAG	2 cut(s)	311, 2639
ZraI	GACGTC	1 cut(s)	2989
ZrmI	AGTACT	1 cut(s)	48
Zsp2I	ATGCAT	2 cut(s)	739, 1912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.