Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009526.1

Orthogroup ID

OG0015312

Physical Location & Seq

Genomic Coordinates Reverse (-)

17816 .. 21208

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009526.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3393 bp

atgcagaacactaatccacttcagctttttcttcatctttcactgatcatacttgtttccacagctgaacaagtcgttccttccatcaaaaccgatgccgagtcacttctcaagttcaaacagatgattgacaaggacccaaatggagttttatcaggttggcagcttggtaaaaatccatgcacctggtttggaatcacatgcaccgcaggcagagcaactcaacttgatctcagcggtggtttactagttgggacaatctctttcgaccctttttcttctcttgatatgctctctgtcttgaaactctcttccaattcgttcaatgtaagttccacttctttgcttcagcttcccagtggtctcaaacagctagatgtgtccttcaccggactctccggtgttgttcctgagaaccttttcttaaggtgtcccaatctcgaaatggtaaatcttggtttcaacaatttaacaggtcctttgcccaaggacatgttcttgaattctgataaactacaagctctagacttgtcttacaacaacctaaccgggtcaatttccggtttcaaaattgacaagaattcttgttcctcattagctcagcttgatttctcaggaaaccgcataactggttcccttcctgtgtccttctcgaattgcactgttctcaaaaccataaacatagcatataatatgctttcaggggaaatcccaaaatcttttgggcaactcagcagtctacaaagacttgacctttctcacaatcaaatcaccagttggatccctcctgaattaggaaatacatgcaactcacttttagagcttaagctttcgtataacaacatcagtggcccaatcccacctactatttcctcttgttcttggctccaacttcttgatctgtccaacaacaacatatcaggccccttcccagattctgtctttcagaatctcacctccttggagagcttgcttttgagtaacaacatcatatcaggagagtttccgggttcgatttcagcttgcaaaagcctacaggttatagacttcagctctaacaagatatctggtgtgatcccgcctgatttatgtcctggagctgcttcacttcaggagctgagaatgccagataaccttatcacaggagaaatccctgctcaactttcgcaatgttcgcagctgaagactattgatctgagcttgaactatctcaacggttccattcccgctgagctcgggaagttggagaatctgcagcagctgatagcatggtacaatggcttggaggggaaaatcccaccagacttgggaaagtgcaagaatctcaaggatctcattctcaataataaccgcctcagcggcgaaatcccaaccgaattgttcagttgcagcaatcttgagtggatatcactgacaagcaatagaatcagtggcgaaatcccaagggagtttggggtcttgacaaggctggctgttctgcaacttgggaataacagcttaagtgggcagataccaggagaattgtcaaattgtagcagtttggtttggttggatttgaacagcaacagactaactggagagatcccagcaagactaggaaggcagctcggcgcgaaatcattgagtggaattctgtctgggaacacattggtgtttgttcgcaatgtggggaattcttgtaaaggagtaggaggtttgttagagtttgctggaatcagacctgaaaggcttttgcaggatccaactttgaagacttgtgatttcaccagattgtactctggccctgtcctcagtctgtttacaaagtaccaaacacttgaatatcttgatctttcttataatcagctccgcgggaaaatcccagatgaaatgggagacatgattgcgctacaagttcttgagttagctcacaaccagttgtcaggtgagattcctgcatcgcttggccagcttaagaatctaggtgtgtttgatgcatcacataacagactgcagggtcatatcccagattcattctccaacttatcatttttggttcaaattgatttgtcttacaatgaattgactggggagattcccccaaggggacaactgagtacacttcctgctacccaatatgctcacaatccaggactctgtggggttccattgccagactgctcaagcagcaatgaccaaccaagcaccactccaagtgatgaggatgctgccaaagcaagtcgaaagtcatcagttgcatcatgggctaatagcattgttgtggggattcttatttccgttgcttcggtgtgtgttctgattgtgtggggcattgcaatgcgttcaaggcggaaggaagcacaagaggtgaagatgcttaaccgcttgcaggcatctcgcgcagcaaccacatggaaaatagacaaagagaaagaaccattgagcatcaatgttgctacttttcagaggcagctaaggaagctcaagttctcccaactcattgaggcaaccaatggcttctcagcagatagtcttataggttgtggaggtttcggagaagtgttcaaggcaacgctgaaggatggttcgagtgttgcaatcaagaaactcatacgattgagctgccaaggtgaccgtgagttcatggctgagatggaaactcttggaaagattaagcatagaaatcttgtgcccttattgggctactgcaaaattggtgaagagaggctgctagtctatgagttcatggagtatggaagcctcgaagaaatgctccatgggagaacaaggacgcgcgacagaaagatcctatcatgggaggaaaggaaaaagattgcaagaggtgcagctaaagggttgtgtttcctccaccacaattgtatccctcacattatacacagagacatgaaatcaagcaatgtattgttggacaatgaaatggaagcaagagtttctgattttggaatggcaaggctcataagtgcacttgacacacacttgagtgtaagcactctagcaggcacccctggctatgttccaccagaatactaccaaagtttccgatgcactgcaaaaggcgatgtctattcatttggggttgtcctattggagcttgtgacaggaaagcgcccaacggacaaggaggacttcggggatactaatctagtggggtgggcgaaaatgaaagtcagagaagggaaacagatggaagtgatagaccaggacttggttttggcagccaaaggaagtgaccaagcagaagccgaagaagtgaaggaaatggtaaggtatttggaagtaacacttcgatgcgttgatgacttcccttccaagaggcctaacatgttgcaggtggtggccttgcttcgcgagttgatgcccgaatcagcaagtgggagcagcaacagcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1130

Amino Acids

123.49

Weight (kDa)

6.04

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01950
fragaria_vesca	FvH4_5g27210
malus_domestica	MD13G1014800.v1.1
prunus_persica	Prupe.1G338800_v2.0.a1
pyrus_communis	pycom13g01260 pycom16g01160
rosa_chinensis	RchiOBHm_Chr7g0218311
rosa_laevigata	RLG00000002379
rosa_multiflora	Rmu_sc0009526.1_g000007
rosa_roxburghii	Rroxscaffold_3G00241060
rosa_rugosa	Rorug07G0176700
rosa_samantha	Rh7AG318000 Rh7BG309700 Rh7CG334800 Rh7DG317000
rosa_wichuraiana	Rw7G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1839
AarI	CACCTGC	1 cut(s)	3319
AasI	GACNNNNNNGTC	1 cut(s)	1995
Acc36I	ACCTGC	1 cut(s)	3319
AccB1I	GGYRCC	1 cut(s)	2999
AccB7I	CCANNNNNTGG	1 cut(s)	3205
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
AclWI	GGATC	8 cut(s)	775, 788, 1069, 1338, 1576, 1733, 1746, 2779
AcoI	YGGCCR	1 cut(s)	1945
AcsI	RAATTY	4 cut(s)	502, 580, 1629, 1672
AcuI	CTGAAG	6 cut(s)	5, 332, 1033, 1094, 1202, 2576
AfaI	GTAC	4 cut(s)	1274, 1775, 1808, 2098
AfeI	AGCGCT	1 cut(s)	3388
AfiI	CCNNNNNNNGG	7 cut(s)	794, 1307, 2084, 2368, 2678, 2794, 3205
AflII	CTTAAG	4 cut(s)	424, 824, 1498, 1952
AflIII	ACRYGT	2 cut(s)	492, 3321
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	6 cut(s)	185, 1093, 1513, 2128, 3004, 3198
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AleI	CACNNNNGTG	2 cut(s)	1649, 2979
Alw21I	GWGCWC	2 cut(s)	1236, 2965
Alw26I	GTCTC	3 cut(s)	368, 1869, 2874
Alw44I	GTGCAC	1 cut(s)	2961
AlwI	GGATC	8 cut(s)	775, 788, 1069, 1338, 1576, 1733, 1746, 2779
AlwNI	CAGNNNCTG	3 cut(s)	938, 1117, 1261
Ama87I	CYCGRG	1 cut(s)	1235
Aor51HI	AGCGCT	1 cut(s)	3388
AoxI	GGCC	6 cut(s)	850, 922, 1780, 1945, 3314, 3336
ApaLI	GTGCAC	1 cut(s)	2961
ApoI	RAATTY	4 cut(s)	502, 580, 1629, 1672
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	6 cut(s)	1613, 1888, 2381, 2775, 3108, 3389
AspS9I	GGNCC	5 cut(s)	136, 476, 851, 923, 1781
AsuC2I	CCSGG	2 cut(s)	550, 1008
AsuHPI	GGTGA	8 cut(s)	379, 763, 946, 1756, 1937, 2359, 2621, 2708
AvaI	CYCGRG	1 cut(s)	1235
AvaII	GGWCC	2 cut(s)	136, 476
BaeGI	GKGCMC	2 cut(s)	2673, 2965
BaeI	ACNNNNGTAYC	2 cut(s)	2842, 2875
BalI	TGGCCA	1 cut(s)	1947
BamHI	GGATCC	2 cut(s)	780, 1738
BanI	GGYRCC	1 cut(s)	2999
BanII	GRGCYC	1 cut(s)	1236
BbsI	GAAGAC	2 cut(s)	1190, 1757
Bbv12I	GWGCWC	2 cut(s)	1236, 2965
BbvCI	CCTCAGC	1 cut(s)	1355
BccI	CCATC	4 cut(s)	92, 2555, 2626, 3178
BcgI	CGANNNNNNTGC	4 cut(s)	2357, 2391, 2583, 2617
BciT130I	CCWGG	6 cut(s)	187, 1095, 1515, 2130, 3006, 3200
BciVI	GTATCC	2 cut(s)	2870, 3127
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	550, 1008
BcoDI	GTCTC	3 cut(s)	368, 1869, 2874
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	8 cut(s)	248, 374, 524, 1595, 1961, 2711, 2993, 3143
BfmI	CTRYAG	3 cut(s)	1034, 1253, 1991
BfoI	RGCGCY	2 cut(s)	3109, 3390
BfrI	CTTAAG	4 cut(s)	424, 824, 1498, 1952
BfuAI	ACCTGC	1 cut(s)	3319
BfuI	GTATCC	2 cut(s)	2870, 3127
BglI	GCCNNNNNGGC	1 cut(s)	1359
BlpI	GCTNAGC	2 cut(s)	600, 1230
Bme1390I	CCNGG	8 cut(s)	187, 550, 1008, 1095, 1515, 2130, 3006, 3200
Bme18I	GGWCC	2 cut(s)	136, 476
BmeT110I	CYCGRG	1 cut(s)	1235
BmgT120I	GGNCC	5 cut(s)	136, 476, 851, 923, 1781
BmiI	GGNNCC	9 cut(s)	138, 634, 782, 887, 925, 1219, 1740, 2145, 3001
BmrFI	CCNGG	8 cut(s)	187, 550, 1008, 1095, 1515, 2130, 3006, 3200
BmrI	ACTGGG	2 cut(s)	351, 2076
BmuI	ACTGGG	2 cut(s)	351, 2076
BpiI	GAAGAC	2 cut(s)	1190, 1757
BpmI	CTGGAG	2 cut(s)	1116, 1596
Bpu10I	CCTNAGC	2 cut(s)	1355, 2453
Bpu1102I	GCTNAGC	2 cut(s)	600, 1230
BpuEI	CTTGAG	7 cut(s)	95, 1310, 1418, 1919, 2146, 2447, 2998
BpuMI	CCSGG	2 cut(s)	550, 1008
BsaBI	GATNNNNATC	1 cut(s)	3138
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	8 cut(s)	486, 960, 1442, 1849, 2081, 2605, 2755, 3004
BsaWI	WCCGGW	3 cut(s)	389, 398, 560
Bsc4I	CCNNNNNNNGG	7 cut(s)	794, 1307, 2084, 2368, 2678, 2794, 3205
Bse1I	ACTGG	6 cut(s)	357, 634, 774, 1579, 1915, 2071
Bse3DI	GCAATG	7 cut(s)	1175, 1669, 2147, 2176, 2310, 2322, 2902
Bse8I	GATNNNNATC	1 cut(s)	3138
BseBI	CCWGG	6 cut(s)	187, 1095, 1515, 2130, 3006, 3200
BseDI	CCNNGG	8 cut(s)	486, 960, 1442, 1849, 2081, 2605, 2755, 3004
BseGI	GGATG	2 cut(s)	2209, 2566
BseJI	GATNNNNATC	1 cut(s)	3138
BseLI	CCNNNNNNNGG	7 cut(s)	794, 1307, 2084, 2368, 2678, 2794, 3205
BseMI	GCAATG	7 cut(s)	1175, 1669, 2147, 2176, 2310, 2322, 2902
BseNI	ACTGG	6 cut(s)	357, 634, 774, 1579, 1915, 2071
BseSI	GKGCMC	2 cut(s)	2673, 2965
BseYI	CCCAGC	1 cut(s)	1585
BsgI	GTGCAG	1 cut(s)	2844
Bsh1236I	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
BshFI	GGCC	6 cut(s)	852, 924, 1782, 1947, 3316, 3338
BshNI	GGYRCC	1 cut(s)	2999
BsiHKAI	GWGCWC	2 cut(s)	1236, 2965
BsiHKCI	CYCGRG	1 cut(s)	1235
BsiSI	CCGG	5 cut(s)	390, 399, 549, 561, 1007
BslFI	GGGAC	3 cut(s)	268, 417, 2100
BslI	CCNNNNNNNGG	7 cut(s)	794, 1307, 2084, 2368, 2678, 2794, 3205
BsmAI	GTCTC	3 cut(s)	368, 1869, 2874
BsmFI	GGGAC	3 cut(s)	268, 417, 2100
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	6 cut(s)	852, 924, 1782, 1947, 3316, 3338
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	1235
Bsp1286I	GDGCHC	3 cut(s)	1236, 2673, 2965
Bsp1720I	GCTNAGC	2 cut(s)	600, 1230
Bsp19I	CCATGG	1 cut(s)	2755
Bsp68I	TCGCGA	1 cut(s)	3348
BspANI	GGCC	6 cut(s)	852, 924, 1782, 1947, 3316, 3338
BspFNI	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
BspLI	GGNNCC	9 cut(s)	138, 634, 782, 887, 925, 1219, 1740, 2145, 3001
BspMAI	CTGCAG	2 cut(s)	1257, 1995
BspMI	ACCTGC	1 cut(s)	3319
BspPI	GGATC	8 cut(s)	775, 788, 1069, 1338, 1576, 1733, 1746, 2779
BspT107I	GGYRCC	1 cut(s)	2999
BspTI	CTTAAG	4 cut(s)	424, 824, 1498, 1952
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	7 cut(s)	1175, 1669, 2147, 2176, 2310, 2322, 2902
BsrI	ACTGG	6 cut(s)	357, 634, 774, 1579, 1915, 2071
BssECI	CCNNGG	8 cut(s)	486, 960, 1442, 1849, 2081, 2605, 2755, 3004
BssT1I	CCWWGG	6 cut(s)	486, 960, 1442, 2081, 2605, 2755
Bst2UI	CCWGG	6 cut(s)	187, 1095, 1515, 2130, 3006, 3200
Bst4CI	ACNGT	3 cut(s)	664, 1217, 2615
Bst6I	CTCTTC	2 cut(s)	316, 2694
BstAFI	CTTAAG	4 cut(s)	424, 824, 1498, 1952
BstAPI	GCANNNNNTGC	1 cut(s)	2822
BstC8I	GCNNGC	8 cut(s)	211, 971, 1024, 1470, 1949, 2366, 2370, 2998
BstDSI	CCRYGG	2 cut(s)	1849, 2755
BstEII	GGTNACC	1 cut(s)	2609
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	2209, 2566
BstFNI	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
BstH2I	RGCGCY	2 cut(s)	3109, 3390
BstHHI	GCGC	6 cut(s)	1613, 1888, 2381, 2775, 3108, 3389
BstMAI	GTCTC	3 cut(s)	368, 1869, 2874
BstNI	CCWGG	6 cut(s)	187, 1095, 1515, 2130, 3006, 3200
BstNSI	RCATGY	4 cut(s)	204, 496, 807, 3325
BstPI	GGTNACC	1 cut(s)	2609
BstSCI	CCNGG	8 cut(s)	185, 548, 1006, 1093, 1513, 2128, 3004, 3198
BstSFI	CTRYAG	3 cut(s)	1034, 1253, 1991
BstSLI	GKGCMC	2 cut(s)	2673, 2965
BstUI	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
BstV2I	GAAGAC	2 cut(s)	1190, 1757
BstX2I	RGATCY	5 cut(s)	780, 1330, 1581, 1738, 2784
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	5 cut(s)	780, 1330, 1581, 1738, 2784
BsuI	GTATCC	2 cut(s)	2870, 3127
BsuRI	GGCC	6 cut(s)	852, 924, 1782, 1947, 3316, 3338
BtgI	CCRYGG	2 cut(s)	1849, 2755
BtgZI	GCGATG	2 cut(s)	1923, 3072
BtsCI	GGATG	2 cut(s)	2209, 2566
BtsI	GCAGTG	1 cut(s)	3045
BtsIMutI	CAGTG	7 cut(s)	41, 364, 660, 853, 1409, 1435, 3045
BtuMI	TCGCGA	1 cut(s)	3348
BveI	ACCTGC	1 cut(s)	3319
Cac8I	GCNNGC	8 cut(s)	211, 971, 1024, 1470, 1949, 2366, 2370, 2998
CaiI	CAGNNNCTG	3 cut(s)	938, 1117, 1261
CfoI	GCGC	6 cut(s)	1613, 1888, 2381, 2775, 3108, 3389
Cfr13I	GGNCC	5 cut(s)	136, 476, 851, 923, 1781
Cfr42I	CCGCGG	1 cut(s)	1852
CseI	GACGC	1 cut(s)	2779
CsiI	ACCWGGT	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	1273, 1774, 1807, 2097
CspCI	CAANNNNNGTGG	6 cut(s)	829, 864, 1287, 1322, 2837, 2872
CviQI	GTAC	4 cut(s)	1273, 1774, 1807, 2097
DrdI	GACNNNNNNGTC	1 cut(s)	1995
DseDI	GACNNNNNNGTC	1 cut(s)	1995
EaeI	YGGCCR	1 cut(s)	1945
Eam1104I	CTCTTC	2 cut(s)	316, 2694
EarI	CTCTTC	2 cut(s)	316, 2694
EciI	GGCGGA	1 cut(s)	2344
Ecl136II	GAGCTC	1 cut(s)	1234
Eco130I	CCWWGG	6 cut(s)	486, 960, 1442, 2081, 2605, 2755
Eco147I	AGGCCT	1 cut(s)	3316
Eco24I	GRGCYC	1 cut(s)	1236
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	2 cut(s)	1065, 1407
Eco47I	GGWCC	2 cut(s)	136, 476
Eco47III	AGCGCT	1 cut(s)	3388
Eco53kI	GAGCTC	1 cut(s)	1234
Eco57I	CTGAAG	6 cut(s)	5, 332, 1033, 1094, 1202, 2576
Eco88I	CYCGRG	1 cut(s)	1235
Eco91I	GGTNACC	1 cut(s)	2609
EcoICRI	GAGCTC	1 cut(s)	1234
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	3 cut(s)	136, 476, 923
EcoO65I	GGTNACC	1 cut(s)	2609
EcoRI	GAATTC	4 cut(s)	502, 580, 1629, 1672
EcoRII	CCWGG	6 cut(s)	185, 1093, 1513, 2128, 3004, 3198
EcoRV	GATATC	2 cut(s)	1065, 1407
EcoT14I	CCWWGG	6 cut(s)	486, 960, 1442, 2081, 2605, 2755
EcoT22I	ATGCAT	1 cut(s)	1978
EcoT38I	GRGCYC	1 cut(s)	1236
ErhI	CCWWGG	6 cut(s)	486, 960, 1442, 2081, 2605, 2755
FalI	AAGNNNNNCTT	6 cut(s)	322, 354, 3110, 3142, 3267, 3299
FaqI	GGGAC	3 cut(s)	268, 417, 2100
FauI	CCCGC	3 cut(s)	1086, 1234, 1844
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	739
FokI	GGATG	2 cut(s)	2216, 2573
FriOI	GRGCYC	1 cut(s)	1236
FspBI	CTAG	8 cut(s)	248, 374, 524, 1595, 1961, 2711, 2993, 3143
GlaI	GCGC	6 cut(s)	1612, 1887, 2380, 2774, 3107, 3388
GsaI	CCCAGC	1 cut(s)	1589
GsuI	CTGGAG	2 cut(s)	1116, 1596
HaeII	RGCGCY	2 cut(s)	3109, 3390
HaeIII	GGCC	6 cut(s)	852, 924, 1782, 1947, 3316, 3338
HapII	CCGG	5 cut(s)	390, 399, 549, 561, 1007
HgaI	GACGC	1 cut(s)	2779
HhaI	GCGC	6 cut(s)	1613, 1888, 2381, 2775, 3108, 3389
Hin6I	GCGC	6 cut(s)	1611, 1886, 2379, 2773, 3106, 3387
HinP1I	GCGC	6 cut(s)	1611, 1886, 2379, 2773, 3106, 3387
HindIII	AAGCTT	1 cut(s)	827
HpaII	CCGG	5 cut(s)	390, 399, 549, 561, 1007
HphI	GGTGA	8 cut(s)	379, 763, 946, 1756, 1937, 2359, 2621, 2708
Hpy166II	GTNNAC	5 cut(s)	245, 740, 1800, 2099, 2963
Hpy8I	GTNNAC	5 cut(s)	245, 740, 1800, 2099, 2963
HpyCH4III	ACNGT	3 cut(s)	664, 1217, 2615
HspAI	GCGC	6 cut(s)	1611, 1886, 2379, 2773, 3106, 3387
Ksp22I	TGATCA	1 cut(s)	45
KspI	CCGCGG	1 cut(s)	1852
LmnI	GCTCC	7 cut(s)	891, 1097, 1114, 1851, 2757, 3088, 3375
MabI	ACCWGGT	1 cut(s)	185
MaeI	CTAG	8 cut(s)	248, 374, 524, 1595, 1961, 2711, 2993, 3143
MaeIII	GTNAC	6 cut(s)	102, 980, 2609, 3094, 3227, 3277
MboII	GAAGA	9 cut(s)	23, 270, 303, 1195, 1762, 2362, 2711, 2756, 3257
MfeI	CAATTG	1 cut(s)	2854
MflI	RGATCY	5 cut(s)	780, 1330, 1581, 1738, 2784
MhlI	GDGCHC	3 cut(s)	1236, 2673, 2965
MlsI	TGGCCA	1 cut(s)	1947
MluNI	TGGCCA	1 cut(s)	1947
MlyI	GAGTC	3 cut(s)	110, 387, 2127
MmeI	TCCRAC	8 cut(s)	758, 913, 930, 1224, 1530, 1766, 2043, 2886
Mox20I	TGGCCA	1 cut(s)	1947
Mph1103I	ATGCAT	1 cut(s)	1978
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	1947
MseI	TTAA	7 cut(s)	425, 470, 825, 1499, 1953, 2358, 2652
MslI	CAYNNNNRTG	5 cut(s)	1649, 2258, 2315, 2979, 3286
Msp20I	TGGCCA	1 cut(s)	1947
MspA1I	CMGCKG	7 cut(s)	65, 237, 1180, 1229, 1261, 1359, 1851
MspCI	CTTAAG	4 cut(s)	424, 824, 1498, 1952
MspI	CCGG	5 cut(s)	390, 399, 549, 561, 1007
MspR9I	CCNGG	8 cut(s)	187, 550, 1008, 1095, 1515, 2130, 3006, 3200
MunI	CAATTG	1 cut(s)	2854
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	6 cut(s)	187, 1095, 1515, 2130, 3006, 3200
MvnI	CGCG	6 cut(s)	1613, 1851, 2379, 2773, 2775, 3348
NciI	CCSGG	2 cut(s)	550, 1008
NcoI	CCATGG	1 cut(s)	2755
NlaIV	GGNNCC	9 cut(s)	138, 634, 782, 887, 925, 1219, 1740, 2145, 3001
NmeAIII	GCCGAG	2 cut(s)	124, 1587
NmuCI	GTSAC	4 cut(s)	102, 2609, 3094, 3227
NruI	TCGCGA	1 cut(s)	3348
NsiI	ATGCAT	1 cut(s)	1978
NspI	RCATGY	4 cut(s)	204, 496, 807, 3325
OliI	CACNNNNGTG	2 cut(s)	1649, 2979
PaqCI	CACCTGC	1 cut(s)	3319
PceI	AGGCCT	1 cut(s)	3316
PciI	ACATGT	2 cut(s)	492, 3321
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	3205
PfoI	TCCNGGA	2 cut(s)	1093, 2128
PleI	GAGTC	3 cut(s)	109, 387, 2127
PpsI	GAGTC	3 cut(s)	109, 387, 2127
PpuMI	RGGWCCY	2 cut(s)	136, 476
PscI	ACATGT	2 cut(s)	492, 3321
PsiI	TTATAA	1 cut(s)	1839
Psp124BI	GAGCTC	1 cut(s)	1236
Psp5II	RGGWCCY	2 cut(s)	136, 476
Psp6I	CCWGG	6 cut(s)	185, 1093, 1513, 2128, 3004, 3198
PspEI	GGTNACC	1 cut(s)	2609
PspFI	CCCAGC	1 cut(s)	1585
PspGI	CCWGG	6 cut(s)	185, 1093, 1513, 2128, 3004, 3198
PspN4I	GGNNCC	9 cut(s)	138, 634, 782, 887, 925, 1219, 1740, 2145, 3001
PspPI	GGNCC	5 cut(s)	136, 476, 851, 923, 1781
PspPPI	RGGWCCY	2 cut(s)	136, 476
PstI	CTGCAG	2 cut(s)	1257, 1995
PstNI	CAGNNNCTG	3 cut(s)	938, 1117, 1261
PsuI	RGATCY	5 cut(s)	780, 1330, 1581, 1738, 2784
PvuII	CAGCTG	3 cut(s)	65, 1180, 1261
RruI	TCGCGA	1 cut(s)	3348
RsaI	GTAC	4 cut(s)	1274, 1775, 1808, 2098
RsaNI	GTAC	4 cut(s)	1273, 1774, 1807, 2097
RseI	CAYNNNNRTG	5 cut(s)	1649, 2258, 2315, 2979, 3286
SacI	GAGCTC	1 cut(s)	1236
SacII	CCGCGG	1 cut(s)	1852
SaqAI	TTAA	7 cut(s)	425, 470, 825, 1499, 1953, 2358, 2652
Sau96I	GGNCC	5 cut(s)	136, 476, 851, 923, 1781
SchI	GAGTC	3 cut(s)	110, 387, 2127
ScrFI	CCNGG	8 cut(s)	187, 550, 1008, 1095, 1515, 2130, 3006, 3200
SduI	GDGCHC	3 cut(s)	1236, 2673, 2965
SexAI	ACCWGGT	1 cut(s)	185
SfcI	CTRYAG	3 cut(s)	1034, 1253, 1991
Sfr303I	CCGCGG	1 cut(s)	1852
SgrBI	CCGCGG	1 cut(s)	1852
SinI	GGWCC	2 cut(s)	136, 476
SmiMI	CAYNNNNRTG	5 cut(s)	1649, 2258, 2315, 2979, 3286
SpeI	ACTAGT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	3316
SspMI	CTAG	8 cut(s)	248, 374, 524, 1595, 1961, 2711, 2993, 3143
SstI	GAGCTC	1 cut(s)	1236
StuI	AGGCCT	1 cut(s)	3316
StyD4I	CCNGG	8 cut(s)	185, 548, 1006, 1093, 1513, 2128, 3004, 3198
StyI	CCWWGG	6 cut(s)	486, 960, 1442, 2081, 2605, 2755
TaaI	ACNGT	3 cut(s)	664, 1217, 2615
TaqI	TCGA	8 cut(s)	267, 441, 653, 1013, 2221, 2567, 2742, 3286
TatI	WGTACW	2 cut(s)	1773, 2096
TauI	GCSGC	1 cut(s)	1362
Tru1I	TTAA	7 cut(s)	425, 470, 825, 1499, 1953, 2358, 2652
Tru9I	TTAA	7 cut(s)	425, 470, 825, 1499, 1953, 2358, 2652
TscAI	CASTG	7 cut(s)	48, 364, 667, 853, 1416, 1435, 3052
TseFI	GTSAC	4 cut(s)	102, 2609, 3094, 3227
Tsp45I	GTSAC	4 cut(s)	102, 2609, 3094, 3227
TspGWI	ACGGA	2 cut(s)	2266, 3128
TspRI	CASTG	7 cut(s)	48, 364, 667, 853, 1416, 1435, 3052
Van91I	CCANNNNNTGG	1 cut(s)	3205
Vha464I	CTTAAG	4 cut(s)	424, 824, 1498, 1952
VneI	GTGCAC	1 cut(s)	2961
VpaK11BI	GGWCC	2 cut(s)	136, 476
XagI	CCTNNNNNAGG	1 cut(s)	792
XapI	RAATTY	4 cut(s)	502, 580, 1629, 1672
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	4 cut(s)	204, 496, 807, 3325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	8 cut(s)	248, 374, 524, 1595, 1961, 2711, 2993, 3143
Zsp2I	ATGCAT	1 cut(s)	1978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.