Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014258

Physical Location & Seq

Genomic Coordinates Reverse (-)

1366674 .. 1367821

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTGTAGCTTATCCTCTTGCCTTTCCCTAACCAAAAACCTTGCCCATGCTTCTCTTTCCAGCGACAACAACGATTCACCGCGGCCACCACCGCTGCCATCTCTCCAAGCCAATACCACCAAACCTCCTCTGCCCAGCAGAAACAATACACCAACGATTCTAAGAAAGAAGCAGCAAAACCAGCTACAACGCAAGCCAAGGCAGCCTTCTGTCATTGAAATTGAACGAGCTATTGGCGGCGGAAGGTTCCGCGATGCAAACCCAAAGGACTTGGAAGAACAGAAGAATGCGAAATTCGACATGTCTATGATGAACTTTCCTAGCAAGTTTGAAGGGCCGGTGGAGAAGAAGCTCCGCAAGACCGGAGAGTGGGTGACCGATAAAACTGAAAAGAGTTTCCGTCTAAATGGCAAAAACGTTCTCAAGTTTGTGTTCTTCTGGTTACTACCAATCTGGAGTTTCTCACTCTTAGTGGCCGCTGGGGCCATCAAGCTCAACTCTCCACTTCTTGATGACCTCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

9.96

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01590 AT2G01590
fragaria_vesca	FvH4_4g34062
malus_domestica	MD13G1021700.v1.1
prunus_persica	Prupe.1G330200_v2.0.a1 Prupe.1G330200_v2.0.a1
pyrus_communis	pycom13g02030
rosa_chinensis	RchiOBHm_Chr4g0443571
rosa_laevigata	RLG00000005914
rosa_multiflora	Rmu_sc0001118.1_g000018
rosa_samantha	Rh4AG403100 Rh4AG405000 Rh4BG416000 Rh4CG430500 Rh4DG410400 Rh4DG411600
rosa_wichuraiana	Rw4G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 252
AciI	CCGC	8 cut(s)	80, 82, 92, 237, 240, 250, 355, 477
AclI	AACGTT	1 cut(s)	417
AcoI	YGGCCR	2 cut(s)	83, 474
AcsI	RAATTY	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	218, 224, 332
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 216, 222, 248
AluBI	AGCT	5 cut(s)	9, 184, 230, 352, 493
AluI	AGCT	5 cut(s)	9, 184, 230, 352, 493
AoxI	GGCC	4 cut(s)	83, 335, 474, 483
ApeKI	GCWGC	3 cut(s)	94, 172, 202
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	335, 483
AsuHPI	GGTGA	2 cut(s)	69, 385
BbvI	GCAGC	3 cut(s)	81, 184, 214
BccI	CCATC	2 cut(s)	106, 494
BfaI	CTAG	1 cut(s)	321
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	6 cut(s)	83, 95, 173, 203, 238, 477
BlsI	GCNGC	6 cut(s)	84, 96, 174, 204, 239, 478
BmgT120I	GGNCC	2 cut(s)	335, 483
BmiI	GGNNCC	2 cut(s)	248, 484
BmsI	GCATC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	80, 197
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	80, 197
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	81, 184, 214
BseYI	CCCAGC	2 cut(s)	134, 479
Bsh1236I	CGCG	2 cut(s)	82, 252
BshFI	GGCC	4 cut(s)	85, 337, 476, 485
BsiSI	CCGG	2 cut(s)	338, 363
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	85, 337, 476, 485
BspACI	CCGC	8 cut(s)	80, 82, 92, 237, 240, 250, 355, 477
BspANI	GGCC	4 cut(s)	85, 337, 476, 485
BspFNI	CGCG	2 cut(s)	82, 252
BspLI	GGNNCC	2 cut(s)	248, 484
BsrFI	RCCGGY	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	80, 197
BssT1I	CCWWGG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	161, 469
BstDSI	CCRYGG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	373
BstFNI	CGCG	2 cut(s)	82, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 181, 202, 482
BstNSI	RCATGY	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	373
BstUI	CGCG	2 cut(s)	82, 252
BstV1I	GCAGC	3 cut(s)	81, 184, 214
BsuRI	GGCC	4 cut(s)	85, 337, 476, 485
BtgI	CCRYGG	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	335, 483
Cfr42I	CCGCGG	1 cut(s)	83
CviAII	CATG	3 cut(s)	47, 301, 523
DdeI	CTNAG	2 cut(s)	161, 469
EaeI	YGGCCR	2 cut(s)	83, 474
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	373
EcoO65I	GGTNACC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	3 cut(s)	50, 304, 526
FaiI	YATR	4 cut(s)	48, 302, 308, 524
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FatI	CATG	3 cut(s)	46, 300, 522
Fnu4HI	GCNGC	6 cut(s)	83, 95, 173, 203, 238, 477
Fsp4HI	GCNGC	6 cut(s)	83, 95, 173, 203, 238, 477
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	6 cut(s)	83, 95, 173, 203, 238, 477
GsaI	CCCAGC	2 cut(s)	138, 483
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	4 cut(s)	85, 337, 476, 485
HapII	CCGG	2 cut(s)	338, 363
Hin1II	CATG	3 cut(s)	50, 304, 526
HinfI	GANTC	2 cut(s)	74, 157
HpaII	CCGG	2 cut(s)	338, 363
HphI	GGTGA	2 cut(s)	69, 385
Hpy188III	TCNNGA	2 cut(s)	454, 509
HpyAV	CCTTC	3 cut(s)	216, 237, 326
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 181, 202, 482
HpyF3I	CTNAG	2 cut(s)	161, 469
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	50, 304, 526
KspI	CCGCGG	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	8 cut(s)	73, 148, 194, 351, 376, 424, 439, 465
Lsp1109I	GCAGC	3 cut(s)	81, 184, 214
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	373, 441
MboII	GAAGA	4 cut(s)	287, 295, 358, 427
MluCI	AATT	2 cut(s)	219, 293
MnlI	CCTC	4 cut(s)	25, 135, 138, 527
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	3 cut(s)	82, 94, 479
MspI	CCGG	2 cut(s)	338, 363
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	2 cut(s)	82, 252
MwoI	GCNNNNNNNGC	4 cut(s)	91, 181, 202, 482
NlaIII	CATG	3 cut(s)	50, 304, 526
NlaIV	GGNNCC	2 cut(s)	248, 484
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	74, 157
PkrI	GCNGC	6 cut(s)	84, 96, 174, 204, 239, 478
PscI	ACATGT	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	417
PspEI	GGTNACC	1 cut(s)	373
PspFI	CCCAGC	2 cut(s)	134, 479
PspN4I	GGNNCC	2 cut(s)	248, 484
PspPI	GGNCC	2 cut(s)	335, 483
RseI	CAYNNNNRTG	1 cut(s)	305
SacII	CCGCGG	1 cut(s)	83
SatI	GCNGC	6 cut(s)	83, 95, 173, 203, 238, 477
Sau96I	GGNCC	2 cut(s)	335, 483
SfaNI	GCATC	1 cut(s)	244
SfiI	GGCCNNNNNGGCC	1 cut(s)	482
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	219, 293
SsiI	CCGC	8 cut(s)	80, 82, 92, 237, 240, 250, 355, 477
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	197
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	297
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	2 cut(s)	219, 293
TauI	GCSGC	3 cut(s)	85, 240, 479
TfiI	GAWTC	2 cut(s)	74, 157
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	94, 172, 202
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	389
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.