Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014258

Physical Location & Seq

Genomic Coordinates Forward (+)

2779325 .. 2780064

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCTAGCTTATCCTCTTGTCTTTCCCTAACCAAAAACCTTGCTCATGCTTCTCTTCCAAACAACAACAATGGCTATTCATCACCAACACCACCACCATCTCTCCATGCCAATAATAACACCACCAAACTTCCATTGCGCAGCAGAACAACTCCACCATCGCCGAGAATGAAGCAGCAACCAAACTCGCAACGCCGCAAGCCAAAGCAGCCTACTGTCATCGAAATTGAACGTGTCATTGGTGCTGGAAGGTTCCGCGATGCTGACAACTCGGATGTGGAAGAAAAAAAGGACGCAAAATTCGACATGTCGATGATGAACTTTAGCAAGTTTGAAGGGCCAGTGGAGAAGCAGCTCCGGGAGACAGGAGAGTGGGTGACCAGTCAAACTGAAAGAGGGTTCCGTTCCAATGGCAAAAATATTCTGAAATTTGCGTTCCTGTGGATACTACCAATTTGGGCTTTCTCACTCTTAATTGCGGTTGGAGCCATCAAGCTAAACATCCCACTTCTTGATGACCTCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.77

Weight (kDa)

9.88

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01590 AT2G01590
fragaria_vesca	FvH4_4g34062
malus_domestica	MD13G1021700.v1.1
prunus_persica	Prupe.1G330200_v2.0.a1 Prupe.1G330200_v2.0.a1
pyrus_communis	pycom13g02030
rosa_chinensis	RchiOBHm_Chr4g0443571
rosa_laevigata	RLG00000005914
rosa_multiflora	Rmu_sc0001118.1_g000018
rosa_samantha	Rh4AG403100 Rh4AG405000 Rh4BG416000 Rh4CG430500 Rh4DG410400 Rh4DG411600
rosa_wichuraiana	Rw4G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	140
AccII	CGCG	1 cut(s)	258
AciI	CCGC	3 cut(s)	196, 256, 479
AcsI	RAATTY	2 cut(s)	299, 428
AflIII	ACRYGT	2 cut(s)	232, 306
AgsI	TTSAA	2 cut(s)	230, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	9, 355, 496
AluI	AGCT	3 cut(s)	9, 355, 496
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	141, 175, 208, 352
ApoI	RAATTY	2 cut(s)	299, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	75, 388
BbvI	GCAGC	4 cut(s)	153, 187, 220, 364
BccI	CCATC	3 cut(s)	106, 166, 497
BciVI	GTATCC	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	5 cut(s)	142, 176, 196, 209, 353
BlsI	GCNGC	5 cut(s)	143, 177, 197, 210, 354
Bme1390I	CCNGG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	3 cut(s)	254, 401, 487
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	359
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 360, 390
Bse1I	ACTGG	2 cut(s)	341, 381
Bse3DI	GCAATG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	280, 501
BseMI	GCAATG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	341, 381
BseXI	GCAGC	4 cut(s)	153, 187, 220, 364
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	196, 256, 479
BspANI	GGCC	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	254, 401, 487
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	341, 381
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	200
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	280, 501
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 485
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	153, 187, 220, 364
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	340
BtgZI	GCGATG	2 cut(s)	144, 273
BtsCI	GGATG	2 cut(s)	280, 501
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	302
CviAII	CATG	3 cut(s)	47, 107, 307
CviJI	RGCY	9 cut(s)	9, 75, 202, 211, 340, 355, 461, 488, 496
CviKI_1	RGCY	9 cut(s)	9, 75, 202, 211, 340, 355, 461, 488, 496
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	376
FaeI	CATG	3 cut(s)	50, 110, 310
FaiI	YATR	4 cut(s)	48, 108, 308, 527
FatI	CATG	3 cut(s)	46, 106, 306
Fnu4HI	GCNGC	5 cut(s)	142, 176, 196, 209, 353
FokI	GGATG	2 cut(s)	287, 488
Fsp4HI	GCNGC	5 cut(s)	142, 176, 196, 209, 353
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	5 cut(s)	142, 176, 196, 209, 353
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	50, 110, 310
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	2 cut(s)	75, 388
Hpy188I	TCNGA	2 cut(s)	274, 426
Hpy188III	TCNNGA	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	243, 329
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 485
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	50, 110, 310
HspAI	GCGC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	360, 485
LpnPI	CCDG	6 cut(s)	231, 351, 354, 371, 394, 452
Lsp1109I	GCAGC	4 cut(s)	153, 187, 220, 364
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	47, 293
MluCI	AATT	5 cut(s)	225, 299, 428, 453, 474
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	3 cut(s)	25, 389, 530
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	208, 485
NciI	CCSGG	1 cut(s)	359
NlaIII	CATG	3 cut(s)	50, 110, 310
NlaIV	GGNNCC	3 cut(s)	254, 401, 487
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	5 cut(s)	143, 177, 197, 210, 354
PscI	ACATGT	1 cut(s)	306
PspEI	GGTNACC	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	254, 401, 487
PspPI	GGNCC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	5 cut(s)	142, 176, 196, 209, 353
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	7 cut(s)	11, 42, 235, 254, 357, 498, 522
SfaNI	GCATC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	225, 299, 428, 453, 474
SsiI	CCGC	3 cut(s)	196, 256, 479
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	222, 303, 311
TasI	AATT	5 cut(s)	225, 299, 428, 453, 474
TauI	GCSGC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	4 cut(s)	141, 175, 208, 352
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	69, 185, 332
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	348
XapI	RAATTY	2 cut(s)	299, 428
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.