Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014258

Physical Location & Seq

Genomic Coordinates Reverse (-)

64667987 .. 64669129

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCTAGCTTATCCTCCTGTCTTTCCCTAACCAAAAACCTTGCTCATGCTTCTCTTCCAAACAACAACAATGGCTCAACATCACCACCACCACCACCACCACCATCTCTCCATGCCAATAATAACACCACCAAACTTCCATTGCGCAGCAGAACAACTCCATCATTGCCGAGAATGAAGCAGCAACCAAATTGGCAACGCCGCAAGCCAAAGCAGGCTACTGTCATCGAAATTGAACGTGTCATTGGTGCTGGAAGATTCCGCGATGCTGACAACTTGGATGTGGAAGAAAAAAAGGACGCAAAATTCGACATGTCGATGATGAACTTTAGCAAGTTTGAAGGGCCAGTGGAGAAGCAGCTCCGGGAGACAGGAGAGTGGGTGACCAATCAAACTGAAAGAGGGTTCCGTTCCAATGGCAAAAATATTCTGAAATTTGCGTTCCTGTGGATACTACCAATTTGGGCTTTCTCACTCCTAGTTGCGGTTGGAGCCATCAAGCTAAACATCCCACTTCTTGATGACCTCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.02

Weight (kDa)

9.93

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01590 AT2G01590
fragaria_vesca	FvH4_4g34062
malus_domestica	MD13G1021700.v1.1
prunus_persica	Prupe.1G330200_v2.0.a1 Prupe.1G330200_v2.0.a1
pyrus_communis	pycom13g02030
rosa_chinensis	RchiOBHm_Chr4g0443571
rosa_laevigata	RLG00000005914
rosa_multiflora	Rmu_sc0001118.1_g000018
rosa_samantha	Rh4AG403100 Rh4AG405000 Rh4BG416000 Rh4CG430500 Rh4DG410400 Rh4DG411600
rosa_wichuraiana	Rw4G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	202, 262, 485
AcsI	RAATTY	2 cut(s)	305, 434
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	2 cut(s)	238, 312
AgsI	TTSAA	2 cut(s)	236, 341
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	3 cut(s)	9, 361, 502
AluI	AGCT	3 cut(s)	9, 361, 502
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	147, 181, 358
ApoI	RAATTY	2 cut(s)	305, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	75, 394
BbvI	GCAGC	3 cut(s)	159, 193, 370
BccI	CCATC	3 cut(s)	112, 169, 503
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	6, 479
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	148, 182, 202, 359
BlsI	GCNGC	4 cut(s)	149, 183, 203, 360
Bme1390I	CCNGG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	407, 493
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	140, 164
BseGI	GGATG	2 cut(s)	286, 507
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	140, 164
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	159, 193, 370
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	202, 262, 485
BspANI	GGCC	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	407, 493
BsrDI	GCAATG	2 cut(s)	140, 164
BsrI	ACTGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	206, 216
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	286, 507
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	363
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	159, 193, 370
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	286, 507
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	206, 216
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	47, 113, 313
CviJI	RGCY	9 cut(s)	9, 75, 208, 218, 346, 361, 467, 494, 502
CviKI_1	RGCY	9 cut(s)	9, 75, 208, 218, 346, 361, 467, 494, 502
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
FaeI	CATG	3 cut(s)	50, 116, 316
FaiI	YATR	4 cut(s)	48, 114, 314, 533
FatI	CATG	3 cut(s)	46, 112, 312
Fnu4HI	GCNGC	4 cut(s)	148, 182, 202, 359
FokI	GGATG	2 cut(s)	293, 494
Fsp4HI	GCNGC	4 cut(s)	148, 182, 202, 359
FspBI	CTAG	2 cut(s)	6, 479
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	4 cut(s)	148, 182, 202, 359
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	50, 116, 316
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	75, 394
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	50, 116, 316
HspAI	GCGC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	366, 491
LpnPI	CCDG	7 cut(s)	31, 200, 237, 357, 360, 377, 458
Lsp1109I	GCAGC	3 cut(s)	159, 193, 370
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	6, 479
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	47, 267, 299
MluCI	AATT	5 cut(s)	190, 231, 305, 434, 459
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	3 cut(s)	25, 395, 536
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	365
NlaIII	CATG	3 cut(s)	50, 116, 316
NlaIV	GGNNCC	2 cut(s)	407, 493
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	382
NsbI	TGCGCA	1 cut(s)	146
NspI	RCATGY	1 cut(s)	316
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	258
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	149, 183, 203, 360
PscI	ACATGT	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	407, 493
PspPI	GGNCC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	317
SatI	GCNGC	4 cut(s)	148, 182, 202, 359
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	6 cut(s)	11, 42, 241, 363, 504, 528
SfaNI	GCATC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	190, 231, 305, 434, 459
SsiI	CCGC	3 cut(s)	202, 262, 485
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	6, 479
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	228, 309, 317
TasI	AATT	5 cut(s)	190, 231, 305, 434, 459
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	3 cut(s)	147, 181, 358
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	191, 338
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	305, 434
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	2 cut(s)	6, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.