Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014258

Physical Location & Seq

Genomic Coordinates Reverse (-)

70548946 .. 70549517

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGCAGCAACCAAATTCGCAACGCCGCAAGCCAAAGAAGCCTACTGTCATCGAAATTGAACGTGTCATTGGTGCTGGAAGGTTCCGCGATGCTGACAACTTGGATGTGGAAGAAAAAAAGGACGCAAAATTCGACATGTCGATGATGAACTTTAGCAAGTTTGAAGGGCCAGTGGAGAAGCAGCTCCGGGAGACAGGCGAGTGGGTGACCAATCAAACTGAAAGAGGGTTCCGTTCCAATGGCAAAAATATTCTGAAATTTGCGTTCCTGTGGATACTACCAATTTGGGCTTTCTCACTCCTAGTTGCGGTTGGAGCCATCAAGCTAAACATCCCACTTCTTGATGACCTCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.88

Weight (kDa)

9.52

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01590 AT2G01590
fragaria_vesca	FvH4_4g34062
malus_domestica	MD13G1021700.v1.1
prunus_persica	Prupe.1G330200_v2.0.a1 Prupe.1G330200_v2.0.a1
pyrus_communis	pycom13g02030
rosa_chinensis	RchiOBHm_Chr4g0443571
rosa_laevigata	RLG00000005914
rosa_multiflora	Rmu_sc0001118.1_g000018
rosa_samantha	Rh4AG403100 Rh4AG405000 Rh4BG416000 Rh4CG430500 Rh4DG410400 Rh4DG411600
rosa_wichuraiana	Rw4G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	28, 88, 311
AcsI	RAATTY	3 cut(s)	16, 131, 260
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	64, 138
AgsI	TTSAA	2 cut(s)	62, 167
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	2 cut(s)	187, 328
AluI	AGCT	2 cut(s)	187, 328
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	7, 184
ApoI	RAATTY	3 cut(s)	16, 131, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	19, 196
BccI	CCATC	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	3 cut(s)	8, 28, 185
BlsI	GCNGC	3 cut(s)	9, 29, 186
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	3 cut(s)	86, 233, 319
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	112, 333
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	19, 196
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	28, 88, 311
BspANI	GGCC	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	86, 233, 319
BsrI	ACTGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	112, 333
BstFNI	CGCG	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 317
BstNSI	RCATGY	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	19, 196
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	112, 333
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	134
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	34, 43, 172, 187, 293, 320, 328
CviKI_1	RGCY	7 cut(s)	34, 43, 172, 187, 293, 320, 328
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 359
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	8, 28, 185
FokI	GGATG	2 cut(s)	119, 320
Fsp4HI	GCNGC	3 cut(s)	8, 28, 185
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	3 cut(s)	8, 28, 185
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	1 cut(s)	142
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	75, 161
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 317
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	192, 317
LpnPI	CCDG	5 cut(s)	63, 183, 186, 203, 284
Lsp1109I	GCAGC	2 cut(s)	19, 196
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	5 cut(s)	16, 57, 131, 260, 285
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	221, 362
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	40, 317
NciI	CCSGG	1 cut(s)	191
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	3 cut(s)	86, 233, 319
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	142
PciI	ACATGT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	9, 29, 186
PscI	ACATGT	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	86, 233, 319
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	3 cut(s)	8, 28, 185
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	5 cut(s)	67, 86, 189, 330, 354
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	16, 57, 131, 260, 285
SsiI	CCGC	3 cut(s)	28, 88, 311
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	54, 135, 143
TasI	AATT	5 cut(s)	16, 57, 131, 260, 285
TauI	GCSGC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	7, 184
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	17, 164
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	3 cut(s)	16, 131, 260
XceI	RCATGY	1 cut(s)	142
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.