Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0021281

Physical Location & Seq

Genomic Coordinates Forward (+)

6497179 .. 6498689

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAGAATCATCGATGGAAGCCGAAGAGGCGAGGCAGAAGAAGATTGAGGATTGGCTTCCGGTCACTTCTGCTAGGAACGCCAAATGGTGGTACTCGGCTTTCCACAATGTCACTGCCATGGTTGGGGCTGGTGTCCTCAGCCTTCCGTATGCCATGTCTGAGCTTGGATGGGGTCCTGGTGTGGCTGTCATGCTTCTGTCATGGATCATCACCCTATACACGCTATGGCAAATGGTTGAGATGCATGAAATGGTGCCGGGGAAGCGGTTCGATAGGTACCACGAGCTGGGACAGCATGCCTTTGGGGAGAAGCTGGGGCTCTGGGTTGTGGTACCCCAACAGCTAGTTGTGGAAGTTGGTGTCAATATTGTCTATATGGTCACAGGAGGAAAATCATTGAAGAAGTTCCATGATGTGATTTGCCCTAGCTGCAAAGACATCAAACTCACCTTATGGATTTTTATTTTTGCTTCTGTCCACTTTGTTATCTCCCACCTCCCCAACTTAAACTCCGTCTCTGGTATCTCACTTGCCGCTGCAGTCATGTCCTTGAGTTACTCAACGATTGCATGGGGAGCTGCCATACACAGGGGGAAGGCACCGGATGTGGACTACAGCTACAAAGCTAAATCCAATTCCGGAGCTGTCTTCAACTTCTTTAGTGGTTTGGGAGAGATAGCATTTGCCTATGCCGGCCACAACGTCGTTTTGGAGATCCAACACGGGTGCAACGATTCCTTCCACACCCGAGAAGCCTTCCAAGGGACCAATGTGGAAAGGAGTGATTGTGGCATACATTGTGGTGGCTTTGTGCTACTTCCCTGTTTCTTTTGTTGGCTACTATATTTACGGAAACACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

289

Amino Acids

32.07

Weight (kDa)

6.88

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021281)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g09700
rosa_multiflora	Rmu_sc0003649.1_g000019
rosa_roxburghii	Rroxscaffold_2G00078120 Rroxscaffold_2G00078160 Rroxscaffold_5G00372790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	279, 334
AccB1I	GGYRCC	4 cut(s)	256, 279, 334, 601
AccB7I	CCANNNNNTGG	2 cut(s)	90, 289
AccIII	TCCGGA	1 cut(s)	641
AciI	CCGC	2 cut(s)	268, 537
AclWI	GGATC	2 cut(s)	215, 712
AcoI	YGGCCR	1 cut(s)	697
AfaI	GTAC	3 cut(s)	95, 281, 336
AfiI	CCNNNNNNNGG	5 cut(s)	90, 126, 289, 591, 765
AgsI	TTSAA	2 cut(s)	403, 655
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	9 cut(s)	166, 289, 316, 346, 432, 581, 621, 629, 647
AluI	AGCT	9 cut(s)	166, 289, 316, 346, 432, 581, 621, 629, 647
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	2 cut(s)	215, 712
Ama87I	CYCGRG	1 cut(s)	750
Aor13HI	TCCGGA	1 cut(s)	641
AoxI	GGCC	1 cut(s)	697
ApeKI	GCWGC	3 cut(s)	432, 539, 581
Asp700I	GAANNNNTTC	2 cut(s)	269, 407
Asp718I	GGTACC	2 cut(s)	279, 334
AspS9I	GGNCC	2 cut(s)	176, 768
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	205, 442
AvaI	CYCGRG	1 cut(s)	750
AvaII	GGWCC	2 cut(s)	176, 768
BanI	GGYRCC	4 cut(s)	256, 279, 334, 601
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	643
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	419, 526, 568
BccI	CCATC	2 cut(s)	10, 165
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	3 cut(s)	75, 347, 429
BfmI	CTRYAG	2 cut(s)	540, 616
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	4 cut(s)	433, 537, 540, 582
BlsI	GCNGC	4 cut(s)	434, 538, 541, 583
Bme1390I	CCNGG	2 cut(s)	180, 261
Bme18I	GGWCC	2 cut(s)	176, 768
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	176, 768
BmiI	GGNNCC	6 cut(s)	177, 258, 281, 336, 603, 769
BmrFI	CCNGG	2 cut(s)	180, 261
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	643
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	120, 260, 763
BsaWI	WCCGGW	3 cut(s)	61, 604, 641
BsaXI	ACNNNNNCTCC	4 cut(s)	497, 527, 775, 805
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 126, 289, 591, 765
Bse118I	RCCGGY	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	3 cut(s)	120, 260, 763
BseGI	GGATG	2 cut(s)	176, 613
BseLI	CCNNNNNNNGG	5 cut(s)	90, 126, 289, 591, 765
BseMII	CTCAG	2 cut(s)	153, 154
BseXI	GCAGC	3 cut(s)	419, 526, 568
BseYI	CCCAGC	2 cut(s)	289, 316
BshFI	GGCC	1 cut(s)	699
BshNI	GGYRCC	4 cut(s)	256, 279, 334, 601
BshVI	ATCGAT	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	5 cut(s)	62, 260, 605, 642, 696
BslFI	GGGAC	2 cut(s)	306, 781
BslI	CCNNNNNNNGG	5 cut(s)	90, 126, 289, 591, 765
BsmAI	GTCTC	1 cut(s)	523
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	306, 781
BsnI	GGCC	1 cut(s)	699
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	641
Bsp143I	GATC	2 cut(s)	207, 717
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	268, 537
BspANI	GGCC	1 cut(s)	699
BspCNI	CTCAG	2 cut(s)	153, 154
BspDI	ATCGAT	1 cut(s)	14
BspEI	TCCGGA	1 cut(s)	641
BspLI	GGNNCC	6 cut(s)	177, 258, 281, 336, 603, 769
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	215, 712
BspT107I	GGYRCC	4 cut(s)	256, 279, 334, 601
BsrFI	RCCGGY	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	120, 260, 763
BssMI	GATC	2 cut(s)	207, 717
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	120, 763
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	300, 697
BstDEI	CTNAG	2 cut(s)	140, 162
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	176, 613
BstKTI	GATC	2 cut(s)	210, 720
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	2 cut(s)	207, 717
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 80, 265, 295, 432, 578
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	178, 259
BstSFI	CTRYAG	2 cut(s)	540, 616
BstV1I	GCAGC	3 cut(s)	419, 526, 568
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	699
BsuTUI	ATCGAT	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	176, 613
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 859
Cac8I	GCNNGC	2 cut(s)	300, 697
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	2 cut(s)	176, 768
ClaI	ATCGAT	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	94, 280, 335
CviAII	CATG	9 cut(s)	121, 157, 193, 204, 248, 299, 413, 547, 573
CviQI	GTAC	3 cut(s)	94, 280, 335
DdeI	CTNAG	2 cut(s)	140, 162
DpnI	GATC	2 cut(s)	209, 719
DpnII	GATC	2 cut(s)	207, 717
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	120, 763
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	176, 768
Eco88I	CYCGRG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	120, 763
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	120, 763
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	9 cut(s)	124, 160, 196, 207, 251, 302, 416, 550, 576
FaqI	GGGAC	2 cut(s)	306, 781
FatI	CATG	9 cut(s)	120, 156, 192, 203, 247, 298, 412, 546, 572
Fnu4HI	GCNGC	4 cut(s)	433, 537, 540, 582
FokI	GGATG	2 cut(s)	183, 620
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	433, 537, 540, 582
FspBI	CTAG	3 cut(s)	75, 347, 429
GluI	GCNGC	4 cut(s)	433, 537, 540, 582
GsaI	CCCAGC	2 cut(s)	293, 320
HaeIII	GGCC	1 cut(s)	699
HapII	CCGG	5 cut(s)	62, 260, 605, 642, 696
Hin1II	CATG	9 cut(s)	124, 160, 196, 207, 251, 302, 416, 550, 576
HinfI	GANTC	2 cut(s)	8, 737
HpaII	CCGG	5 cut(s)	62, 260, 605, 642, 696
HphI	GGTGA	2 cut(s)	205, 442
Hpy166II	GTNNAC	2 cut(s)	481, 613
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	642
Hpy8I	GTNNAC	2 cut(s)	481, 613
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	4 cut(s)	155, 592, 751, 769
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	5 cut(s)	247, 435, 542, 572, 732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 80, 265, 295, 432, 578
HpyF3I	CTNAG	2 cut(s)	140, 162
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	9 cut(s)	124, 160, 196, 207, 251, 302, 416, 550, 576
Kpn2I	TCCGGA	1 cut(s)	641
KpnI	GGTACC	2 cut(s)	283, 338
KroI	GCCGGC	1 cut(s)	695
KroNI	GCCGGC	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	207, 717
LmnI	GCTCC	2 cut(s)	578, 644
Lsp1109I	GCAGC	3 cut(s)	419, 526, 568
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	3 cut(s)	75, 347, 429
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	4 cut(s)	64, 112, 382, 557
MalI	GATC	2 cut(s)	209, 719
MboI	GATC	2 cut(s)	207, 717
MboII	GAAGA	5 cut(s)	38, 52, 55, 415, 643
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	6 cut(s)	22, 27, 43, 149, 383, 509
Mph1103I	ATGCAT	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	641
MroNI	GCCGGC	1 cut(s)	695
MroXI	GAANNNNTTC	2 cut(s)	269, 407
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	119, 804
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	5 cut(s)	62, 260, 605, 642, 696
MspR9I	CCNGG	2 cut(s)	180, 261
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	29, 80, 265, 295, 432, 578
NaeI	GCCGGC	1 cut(s)	697
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	207, 717
NgoMIV	GCCGGC	1 cut(s)	695
NlaIII	CATG	9 cut(s)	124, 160, 196, 207, 251, 302, 416, 550, 576
NlaIV	GGNNCC	6 cut(s)	177, 258, 281, 336, 603, 769
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	3 cut(s)	64, 112, 382
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	732
PdiI	GCCGGC	1 cut(s)	697
PdmI	GAANNNNTTC	2 cut(s)	269, 407
PfeI	GAWTC	2 cut(s)	8, 737
PflMI	CCANNNNNTGG	2 cut(s)	90, 289
PkrI	GCNGC	4 cut(s)	434, 538, 541, 583
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	289, 316
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	6 cut(s)	177, 258, 281, 336, 603, 769
PspPI	GGNCC	2 cut(s)	176, 768
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	3 cut(s)	95, 281, 336
RsaNI	GTAC	3 cut(s)	94, 280, 335
RseI	CAYNNNNRTG	2 cut(s)	119, 804
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	4 cut(s)	433, 537, 540, 582
Sau3AI	GATC	2 cut(s)	207, 717
Sau96I	GGNCC	2 cut(s)	176, 768
ScrFI	CCNGG	2 cut(s)	180, 261
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	2 cut(s)	540, 616
SinI	GGWCC	2 cut(s)	176, 768
SmiMI	CAYNNNNRTG	2 cut(s)	119, 804
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	2 cut(s)	268, 537
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	3 cut(s)	75, 347, 429
StyD4I	CCNGG	2 cut(s)	178, 259
StyI	CCWWGG	2 cut(s)	120, 763
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	14, 273
TasI	AATT	1 cut(s)	637
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	8, 737
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	121, 866
TseFI	GTSAC	3 cut(s)	64, 112, 382
TseI	GCWGC	3 cut(s)	432, 539, 581
Tsp45I	GTSAC	3 cut(s)	64, 112, 382
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	2 cut(s)	138, 505
TspRI	CASTG	2 cut(s)	121, 866
Van91I	CCANNNNNTGG	2 cut(s)	90, 289
VpaK11BI	GGWCC	2 cut(s)	176, 768
XceI	RCATGY	1 cut(s)	302
XmnI	GAANNNNTTC	2 cut(s)	269, 407
XspI	CTAG	3 cut(s)	75, 347, 429
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.