Rmu_sc0003649.1_g000019

Lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003649.1
OG0021281
Physical Location & Seq
Reverse (-)
95505 .. 95831
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003649.1_g000019.1.cds

Sequence Viewer

Length: 327 bp
atggttgagatgcatgagatggttccagggaaacgttttgatcgttaccacgaattgggtcagcatgcatttggtgaaaagcttggtctttacattgtggtgcttcagcaactcattgttgaagttggtgtttgcattgtgtacatggtcaccggaggaaaatctctgcagaaggtccatgacactgcgggctcagactgcaaaaagattaaattgacttacttcatcatgatctttgcctctgttcactttgtgctttcccaccttcccaacttcaactccatctccggcgtgtctttggccgcagctgtcatgtccttgaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

8.62

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021281)

Species Orthologous Gene IDs
pyrus_communis pycom13g09700
rosa_multiflora Rmu_sc0003649.1_g000019
rosa_roxburghii Rroxscaffold_2G00078120 Rroxscaffold_2G00078160 Rroxscaffold_5G00372790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AciI CCGC 2 cut(s) 188, 303
AclI AACGTT 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 122, 277
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 2 cut(s) 82, 308
AluI AGCT 2 cut(s) 82, 308
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 86, 142
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 13, 290
BciT130I CCWGG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 303, 306
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 263, 269, 293, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 153, 288
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 194
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 40, 231
BspACI CCGC 2 cut(s) 188, 303
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 40, 231
Bst2UI CCWGG 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 66, 190
BstDEI CTNAG 1 cut(s) 193
BstEII GGTNACC 1 cut(s) 148
BstKTI GATC 2 cut(s) 43, 234
BstMBI GATC 2 cut(s) 40, 231
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 66, 190
CciI TCATGA 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 142
CviAII CATG 6 cut(s) 14, 65, 145, 179, 229, 313
CviJI RGCY 4 cut(s) 82, 192, 302, 308
CviKI_1 RGCY 4 cut(s) 82, 192, 302, 308
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 42, 233
DpnII GATC 2 cut(s) 40, 231
DraIII CACNNNGTG 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 25
EcoT22I ATGCAT 2 cut(s) 15, 70
EcoT38I GRGCYC 1 cut(s) 194
FaeI CATG 6 cut(s) 17, 68, 148, 182, 232, 316
FaiI YATR 6 cut(s) 15, 66, 146, 180, 230, 314
FatI CATG 6 cut(s) 13, 64, 144, 178, 228, 312
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 303, 306
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 303, 306
GluI GCNGC 2 cut(s) 303, 306
HaeIII GGCC 1 cut(s) 302
HapII CCGG 2 cut(s) 153, 288
Hin1II CATG 6 cut(s) 17, 68, 148, 182, 232, 316
HindIII AAGCTT 1 cut(s) 80
HpaII CCGG 2 cut(s) 153, 288
HphI GGTGA 2 cut(s) 86, 142
Hpy166II GTNNAC 2 cut(s) 142, 247
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 142, 247
HpyAV CCTTC 2 cut(s) 166, 275
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 13, 68, 135, 169, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 6 cut(s) 17, 68, 148, 182, 232, 316
Kzo9I GATC 2 cut(s) 40, 231
LpnPI CCDG 4 cut(s) 12, 39, 166, 301
Lsp1109I GCAGC 1 cut(s) 317
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 2 cut(s) 44, 148
MalI GATC 2 cut(s) 42, 233
MboI GATC 2 cut(s) 40, 231
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 2 cut(s) 53, 212
MnlI CCTC 3 cut(s) 149, 250, 315
Mph1103I ATGCAT 2 cut(s) 15, 70
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 153, 288
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 40, 231
NlaIII CATG 6 cut(s) 17, 68, 148, 182, 232, 316
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 2 cut(s) 15, 70
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PagI TCATGA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 2 cut(s) 304, 307
Psp1406I AACGTT 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 2 cut(s) 40, 231
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 194
SetI ASST 6 cut(s) 37, 84, 177, 267, 310, 326
SfcI CTRYAG 1 cut(s) 167
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SphI GCATGC 1 cut(s) 68
Sse9I AATT 2 cut(s) 53, 212
SsiI CCGC 2 cut(s) 188, 303
StyD4I CCNGG 1 cut(s) 25
TaiI ACGT 1 cut(s) 37
TasI AATT 2 cut(s) 53, 212
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 68
Zsp2I ATGCAT 2 cut(s) 15, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.