Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0021281

Physical Location & Seq

Genomic Coordinates Reverse (-)

54126562 .. 54127699

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCGAGGCTACTCTGTCAGATGCTGAGCTTGCGAGACAGAAGCAGATCAACGATTGGCTTCCCATCACTTCTGCTAGGAATGCCAAATGGTGGTACTCCGCTTTCCACAATGTCACTGCTATGGTTGGGGCTGGTGTCCTCAGTCTTCCTTTTGCACTTGCAGAGCTTGGCTGGGGTCCTGGTGTGGTTATCCTTATTTTGTCATGGGTCATCACCCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTGGGTCAACATGCCTTTGGGCCGAAGCTAGGGCTCTGGGTTGTGGTGCCCCAACAGGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGCCCTAGCTGCAAAGATATCAGGACCACGTTCTGGATTATGATTTTTGCTTCTTGTCACTTTGTGCTTTCCCATCTCCCCAACTTCAACTCCATGTCTGGTATCTCACTCGCCGCAGCAATCATGTCCTTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

8.39

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 186	6.8e-47	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	32 - 143	3.8e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021281)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g09700
rosa_multiflora	Rmu_sc0003649.1_g000019
rosa_roxburghii	Rroxscaffold_2G00078120 Rroxscaffold_2G00078160 Rroxscaffold_5G00372790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	2 cut(s)	93, 459
AciI	CCGC	3 cut(s)	102, 271, 540
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	93, 320, 459
AgsI	TTSAA	2 cut(s)	406, 514
AjnI	CCWGG	2 cut(s)	181, 262
AluBI	AGCT	5 cut(s)	31, 169, 292, 319, 435
AluI	AGCT	5 cut(s)	31, 169, 292, 319, 435
Alw26I	GTCTC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	3, 311
ApeKI	GCWGC	2 cut(s)	435, 542
AspS9I	GGNCC	3 cut(s)	179, 311, 450
AsuHPI	GGTGA	2 cut(s)	208, 397
AvaII	GGWCC	2 cut(s)	179, 450
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	2 cut(s)	259, 337
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	422, 554
BccI	CCATC	2 cut(s)	74, 507
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	183, 264
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	78, 320, 432
BisI	GCNGC	3 cut(s)	436, 540, 543
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	3 cut(s)	437, 541, 544
Bme1390I	CCNGG	2 cut(s)	183, 264
Bme18I	GGWCC	2 cut(s)	179, 450
BmgT120I	GGNCC	3 cut(s)	179, 311, 450
BmiI	GGNNCC	3 cut(s)	180, 261, 339
BmrFI	CCNGG	2 cut(s)	183, 264
BmsI	GCATC	2 cut(s)	13, 237
BpiI	GAAGAC	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 320, 459
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	183, 264
BseDI	CCNNGG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	93, 320, 459
BseMII	CTCAG	2 cut(s)	18, 157
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	422, 554
BseYI	CCCAGC	2 cut(s)	174, 292
BshFI	GGCC	2 cut(s)	5, 313
BshNI	GGYRCC	2 cut(s)	259, 337
BslI	CCNNNNNNNGG	3 cut(s)	93, 320, 459
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	5, 313
Bsp1286I	GDGCHC	2 cut(s)	327, 342
Bsp143I	GATC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	102, 271, 540
BspANI	GGCC	2 cut(s)	5, 313
BspCNI	CTCAG	2 cut(s)	19, 156
BspLI	GGNNCC	3 cut(s)	180, 261, 339
BspT107I	GGYRCC	2 cut(s)	259, 337
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	183, 264
BstC8I	GCNNGC	2 cut(s)	33, 269
BstDEI	CTNAG	2 cut(s)	27, 143
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 83, 268, 435
BstNI	CCWGG	2 cut(s)	183, 264
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	181, 262
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	422, 554
BstV2I	GAAGAC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	5, 313
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	33, 269
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	179, 311, 450
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	6 cut(s)	207, 251, 302, 416, 520, 550
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	27, 143
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	179, 450
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	181, 262
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	6 cut(s)	210, 254, 305, 419, 523, 553
FatI	CATG	6 cut(s)	206, 250, 301, 415, 519, 549
Fnu4HI	GCNGC	3 cut(s)	436, 540, 543
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	436, 540, 543
FspBI	CTAG	3 cut(s)	78, 320, 432
GluI	GCNGC	3 cut(s)	436, 540, 543
GsaI	CCCAGC	2 cut(s)	178, 296
HaeIII	GGCC	2 cut(s)	5, 313
Hin1II	CATG	6 cut(s)	210, 254, 305, 419, 523, 553
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HphI	GGTGA	2 cut(s)	208, 397
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	3 cut(s)	287, 448, 460
Hpy8I	GTNNAC	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	5 cut(s)	158, 164, 250, 372, 438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 83, 268, 435
HpyF3I	CTNAG	2 cut(s)	27, 143
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	6 cut(s)	210, 254, 305, 419, 523, 553
Kzo9I	GATC	1 cut(s)	48
Lsp1109I	GCAGC	2 cut(s)	422, 554
LweI	GCATC	2 cut(s)	13, 237
MaeI	CTAG	3 cut(s)	78, 320, 432
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	115, 385, 482
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	140, 418
MhlI	GDGCHC	2 cut(s)	327, 342
MnlI	CCTC	4 cut(s)	152, 352, 386, 552
Mph1103I	ATGCAT	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	183, 264
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	183, 264
MwoI	GCNNNNNNNGC	4 cut(s)	32, 83, 268, 435
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	6 cut(s)	210, 254, 305, 419, 523, 553
NlaIV	GGNNCC	3 cut(s)	180, 261, 339
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	115, 385, 482
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	305
PctI	GAATGC	1 cut(s)	88
PflMI	CCANNNNNTGG	2 cut(s)	93, 459
PkrI	GCNGC	3 cut(s)	437, 541, 544
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	181, 262
PspFI	CCCAGC	2 cut(s)	174, 292
PspGI	CCWGG	2 cut(s)	181, 262
PspN4I	GGNNCC	3 cut(s)	180, 261, 339
PspPI	GGNCC	3 cut(s)	179, 311, 450
PspPPI	RGGWCCY	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	3 cut(s)	436, 540, 543
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	179, 311, 450
ScrFI	CCNGG	2 cut(s)	183, 264
SduI	GDGCHC	2 cut(s)	327, 342
SfaNI	GCATC	2 cut(s)	13, 237
SinI	GGWCC	2 cut(s)	179, 450
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SsiI	CCGC	3 cut(s)	102, 271, 540
SspMI	CTAG	3 cut(s)	78, 320, 432
StyD4I	CCNGG	2 cut(s)	181, 262
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	276
TauI	GCSGC	1 cut(s)	542
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	115, 385, 482
TseI	GCWGC	2 cut(s)	435, 542
Tsp45I	GTSAC	3 cut(s)	115, 385, 482
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	93, 459
VpaK11BI	GGWCC	2 cut(s)	179, 450
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	3 cut(s)	78, 320, 432
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.