Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0020153

Physical Location & Seq

Genomic Coordinates Reverse (-)

9242704 .. 9243414

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATGGCCTATCAAATAGAACAGTCACTAAGCTTGGCATTTTCTTCCAAACTTCAGCAATTTTTGTGCTCTTTTGGAGAATATGCTTGGCAAAACAGGTTCCTGCTAATTTTGTGTTTGGGGATTCTTTGGTCGATGCGGGAAACAACAACTACCTTGTGTCACTCTCCAAGGCCAACTATCTTCCCAATGGAATCGATTTCGGAAAGCCAACTGGAAGATACACAAATGGAAGAAAAATTATTGACATAATAGGTCAGCAACTTGGCTTCAAAGGTTTCACTCCTCCTTACTTATCTCCAACAACTGCCGGGCCGAAAATTCTGCAGGGTGTAAATTATGCTTCTGGTGGAGGTGGAATCCTTAATCACACAGGGAAGATTTTTGGAGGTCGATTAAACATGGATGAACAGCTAGATTTCTTTGCTAATACCAGGCAAGACATTATCTCCAGCAATGGTCTTCCTGCAGCTCTGGAGCTATTAAGCAAGGCTCTCTTCTCCGTAACAATGGGATCGAACGATTTCATTAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

180

Amino Acids

19.32

Weight (kDa)

9.3

Isoelectric Point (pI)

18.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020153)

Species	Orthologous Gene IDs
malus_domestica	MD16G1152900.v1.1
prunus_persica	Prupe.1G116100_v2.0.a1 Prupe.1G116100_v2.0.a1 Prupe.1G116100_v2.0.a1
pyrus_communis	pycom13g13020 pycom16g13000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	34, 415, 473, 481
AluI	AGCT	4 cut(s)	34, 415, 473, 481
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	3 cut(s)	7, 174, 314
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	313
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	326, 468
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	313, 436
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	313, 436
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	2 cut(s)	436, 497
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	10, 412
BseMI	GCAATG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	3 cut(s)	9, 176, 316
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	312
BsnI	GGCC	3 cut(s)	9, 176, 316
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	515
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	3 cut(s)	9, 176, 316
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	330, 472
BspPI	GGATC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	503
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	10, 412
BstKTI	GATC	1 cut(s)	518
BstMBI	GATC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	311, 434
BstSFI	CTRYAG	2 cut(s)	326, 468
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	9, 176, 316
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	10, 412
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	406
FaiI	YATR	4 cut(s)	85, 251, 342, 404
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FatI	CATG	1 cut(s)	402
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	17, 419
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	436, 497
HaeIII	GGCC	3 cut(s)	9, 176, 316
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	125, 195, 360
HpaII	CCGG	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	476
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	328, 470
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	25, 162, 505
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	7 cut(s)	37, 176, 231, 246, 391, 455, 490
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	5 cut(s)	60, 109, 240, 321, 337
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	3 cut(s)	297, 347, 383
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	4 cut(s)	366, 398, 485, 531
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	313, 436
MvaI	CCWGG	1 cut(s)	436
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	25, 162
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	125, 195, 360
PkrI	GCNGC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	2 cut(s)	330, 472
SaqAI	TTAA	4 cut(s)	366, 398, 485, 531
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	1 cut(s)	515
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	313, 436
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	2 cut(s)	326, 468
Sse9I	AATT	5 cut(s)	60, 109, 240, 321, 337
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	311, 434
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	135, 198, 394, 518
TasI	AATT	5 cut(s)	60, 109, 240, 321, 337
TfiI	GAWTC	3 cut(s)	125, 195, 360
Tru1I	TTAA	4 cut(s)	366, 398, 485, 531
Tru9I	TTAA	4 cut(s)	366, 398, 485, 531
TseFI	GTSAC	2 cut(s)	25, 162
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	25, 162
TspDTI	ATGAA	2 cut(s)	423, 517
TspGWI	ACGGA	1 cut(s)	493
XapI	RAATTY	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.