Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018540

Physical Location & Seq

Genomic Coordinates Reverse (-)

12171685 .. 12174220

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGGTCCCCTAAGCGAGAAAATGCTTCTTCTTCTTCTTCCTCCTCTCAACTCACAGACGCTTCGATCTCCGGGCTCCATGAGAAGCATCAAGAGGAACTAGATAACTTGACACTAACATCACAACCCTTCAGAACGTTGAAGTTTTTCATTTTGGCTGTAATTCAGTATGTTAAGCGTTTAATATCATATTTGTTGGCAAGAGGTGGTTGGCTTATGCTTTCGAGTATTGTGCTATTGTCTCTTGGAGTTCTTCTAATTACCATTGATGGTCCTCATGAAAAGCATCTTGAGGAACTTGTCAAATATTTCCAGTTTGGTTTATGGTGGGTGGCCCTTGGAATTGCATCTTCGATTGGTCTTGGATCTGGTTTGCACACGTTTGTCCTATATCTGGGCCCCCATATTGCGTTCTTTACATTAAAGGCAATGCAGTGTGGTCGGATCGATCTAAAAAGTGCCCCCTACGATACAATACAGCTAAAACAAGGCCCTTCGTGGCTTGGGAAGAACTGCTCTGACTTTGGACCACCCTTGTTTCCATCATTACATGGGTTGCGGGTTCCACTTAGCAGCATATTACCACAGGTCCAGTTAGAGGCTGTTTTATGGGGTCTTGGGACTGCAATTGGGGAGCTTCCTCCATATTTTATCTCAAGGGCAGCAAGCCTGTCTGGTAACAAAGTTGCTATGGAAGAATTGGATCGATCCCTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

240

Amino Acids

26.25

Weight (kDa)

8.52

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018540)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g16400
rosa_laevigata	RLG00000006783
rosa_multiflora	Rmu_sc0002169.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007500 Rroxscaffold_2G00084800 Rroxscaffold_3G00232930 Rroxscaffold_5G00350610 Rroxscaffold_7G00165770
rosa_wichuraiana	Rw1G015190 Rw4G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	559
AclI	AACGTT	1 cut(s)	137
AclWI	GGATC	4 cut(s)	373, 452, 702, 711
AcuI	CTGAAG	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	394, 598
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	2 cut(s)	481, 637
AluI	AGCT	2 cut(s)	481, 637
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	4 cut(s)	373, 452, 702, 711
AoxI	GGCC	3 cut(s)	333, 397, 490
ApaI	GGGCCC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	573, 662
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	8 cut(s)	6, 272, 334, 397, 398, 491, 527, 589
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	4 cut(s)	6, 272, 527, 589
BaeGI	GKGCMC	2 cut(s)	401, 463
BanII	GRGCYC	2 cut(s)	78, 401
BbvI	GCAGC	2 cut(s)	585, 674
BccI	CCATC	2 cut(s)	263, 550
BcgI	CGANNNNNNTGC	4 cut(s)	214, 248, 422, 456
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	574, 663
BlsI	GCNGC	2 cut(s)	575, 664
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	4 cut(s)	6, 272, 527, 589
BmgT120I	GGNCC	8 cut(s)	6, 272, 334, 397, 398, 491, 527, 589
BmiI	GGNNCC	6 cut(s)	7, 8, 77, 399, 400, 564
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	3 cut(s)	97, 295, 356
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	311, 640
BpuMI	CCSGG	1 cut(s)	73
Bsa29I	ATCGAT	2 cut(s)	447, 706
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 598
Bse1I	ACTGG	2 cut(s)	313, 592
Bse3DI	GCAATG	1 cut(s)	435
BseCI	ATCGAT	2 cut(s)	447, 706
BseDI	CCNNGG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	394, 598
BseMI	GCAATG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	313, 592
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	401, 463
BseXI	GCAGC	2 cut(s)	585, 674
BshFI	GGCC	3 cut(s)	335, 399, 492
BshVI	ATCGAT	2 cut(s)	447, 706
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	2 cut(s)	394, 598
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	335, 399, 492
Bsp120I	GGGCCC	1 cut(s)	397
Bsp1286I	GDGCHC	3 cut(s)	78, 401, 463
Bsp143I	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	3 cut(s)	335, 399, 492
BspDI	ATCGAT	2 cut(s)	447, 706
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	6 cut(s)	7, 8, 77, 399, 400, 564
BspPI	GGATC	4 cut(s)	373, 452, 702, 711
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	313, 592
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
BssT1I	CCWWGG	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	12, 569, 713
BstKTI	GATC	6 cut(s)	69, 368, 447, 451, 706, 710
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
BstSCI	CCNGG	1 cut(s)	71
BstSLI	GKGCMC	2 cut(s)	401, 463
BstV1I	GCAGC	2 cut(s)	585, 674
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu15I	ATCGAT	2 cut(s)	447, 706
BsuRI	GGCC	3 cut(s)	335, 399, 492
BsuTUI	ATCGAT	2 cut(s)	447, 706
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	667
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	8 cut(s)	6, 272, 334, 397, 398, 491, 527, 589
ClaI	ATCGAT	2 cut(s)	447, 706
CseI	GACGC	1 cut(s)	68
CviAII	CATG	3 cut(s)	80, 278, 551
DdeI	CTNAG	3 cut(s)	12, 569, 713
DpnI	GATC	6 cut(s)	68, 367, 446, 450, 705, 709
DpnII	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	78, 401
Eco47I	GGWCC	4 cut(s)	6, 272, 527, 589
Eco57I	CTGAAG	1 cut(s)	115
EcoO109I	RGGNCCY	3 cut(s)	6, 398, 491
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	78, 401
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	3 cut(s)	83, 281, 554
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	3 cut(s)	79, 277, 550
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	574, 663
FriOI	GRGCYC	2 cut(s)	78, 401
Fsp4HI	GCNGC	2 cut(s)	574, 663
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	574, 663
HaeIII	GGCC	3 cut(s)	335, 399, 492
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	83, 281, 554
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	4 cut(s)	134, 444, 520, 716
Hpy188III	TCNNGA	3 cut(s)	92, 278, 290
HpyAV	CCTTC	2 cut(s)	139, 504
HpyCH4IV	ACGT	2 cut(s)	137, 380
HpyCH4V	TGCA	4 cut(s)	347, 376, 433, 626
HpyF3I	CTNAG	3 cut(s)	12, 569, 713
HpySE526I	ACGT	2 cut(s)	137, 380
Hsp92II	CATG	3 cut(s)	83, 281, 554
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
LmnI	GCTCC	2 cut(s)	81, 634
LpnPI	CCDG	8 cut(s)	85, 326, 354, 380, 572, 605, 660, 683
Lsp1109I	GCAGC	2 cut(s)	585, 674
LweI	GCATC	3 cut(s)	97, 295, 356
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	137, 380
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	6 cut(s)	68, 367, 446, 450, 705, 709
MboI	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
MboII	GAAGA	8 cut(s)	21, 24, 27, 30, 245, 342, 520, 707
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	3 cut(s)	78, 401, 463
MluCI	AATT	5 cut(s)	162, 258, 342, 627, 698
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	8 cut(s)	52, 55, 88, 197, 285, 286, 592, 651
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	3 cut(s)	174, 182, 422
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	627
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
NlaIII	CATG	3 cut(s)	83, 281, 554
NlaIV	GGNNCC	6 cut(s)	7, 8, 77, 399, 400, 564
PagI	TCATGA	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	575, 664
PpuMI	RGGWCCY	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	6
PspN4I	GGNNCC	6 cut(s)	7, 8, 77, 399, 400, 564
PspOMI	GGGCCC	1 cut(s)	397
PspPI	GGNCC	8 cut(s)	6, 272, 334, 397, 398, 491, 527, 589
PspPPI	RGGWCCY	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	174, 182, 422
SatI	GCNGC	2 cut(s)	574, 663
Sau3AI	GATC	6 cut(s)	66, 365, 444, 448, 703, 707
Sau96I	GGNCC	8 cut(s)	6, 272, 334, 397, 398, 491, 527, 589
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	3 cut(s)	78, 401, 463
SetI	ASST	6 cut(s)	140, 208, 383, 483, 591, 639
SfaNI	GCATC	3 cut(s)	97, 295, 356
SinI	GGWCC	4 cut(s)	6, 272, 527, 589
SmlI	CTYRAG	2 cut(s)	290, 655
SmoI	CTYRAG	2 cut(s)	290, 655
Sse9I	AATT	5 cut(s)	162, 258, 342, 627, 698
SsiI	CCGC	1 cut(s)	559
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	2 cut(s)	140, 383
TaqI	TCGA	5 cut(s)	65, 224, 353, 447, 706
TasI	AATT	5 cut(s)	162, 258, 342, 627, 698
Tru1I	TTAA	3 cut(s)	174, 182, 422
Tru9I	TTAA	3 cut(s)	174, 182, 422
TscAI	CASTG	1 cut(s)	440
TseI	GCWGC	2 cut(s)	573, 662
TspDTI	ATGAA	2 cut(s)	139, 294
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	4 cut(s)	6, 272, 527, 589
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.