Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0018540

Physical Location & Seq

Genomic Coordinates Reverse (-)

44444 .. 45942

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggatctccctgattcgcccccttcaaatcccatggattcgcccgtctccggactgcgtgtgaggcatcaccgggagctcgaaaatttaacacttacgacgaggccggtaaagacattaaagtatttcactgtagcaattggtcggtattttcggcaatttatggcaactggtggttcgtttgtgctgtttattatgctagcgggaggtctaggaattgctactatgacaattggcggaccacatgaaaagcacatgcaggagcttttccgttatctgcaatttggactctggtggctggctcttggtgtggcatcatcaattggtctcggatctggtttgcacacatttgtactgtatttgggccctcatatagctctgtttaccatgaaagccgtgcagtgtggcagagttgacttaaaaattgccccatatgataccgttcaattgaaaacgggtccttcatggatggatagaaactgctctgaatatggtcccccactattttcgtcccagcaaggttcaaggctcccactcagcagcatactgcctcaggttcagttagaggctattctgtggggaattggaactgcactgggagagcttcctccatttttcatatcaagagctggtaactaccaaacaaacaaaataagtacttacggtcacctagtgaattgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.18

Weight (kDa)

9.22

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018540)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g16400
rosa_laevigata	RLG00000006783
rosa_multiflora	Rmu_sc0002169.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007500 Rroxscaffold_2G00084800 Rroxscaffold_3G00232930 Rroxscaffold_5G00350610 Rroxscaffold_7G00165770
rosa_wichuraiana	Rw1G015190 Rw4G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	2 cut(s)	203, 237
AclWI	GGATC	2 cut(s)	12, 340
AcsI	RAATTY	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	673
AfaI	GTAC	2 cut(s)	354, 658
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	27, 446, 451, 525
AluBI	AGCT	5 cut(s)	79, 265, 377, 604, 629
AluI	AGCT	5 cut(s)	79, 265, 377, 604, 629
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	52, 332
AlwI	GGATC	2 cut(s)	12, 340
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	104, 364
ApaI	GGGCCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	62, 659
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	3 cut(s)	239, 458, 494
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	81, 368
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	552
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	52, 332
BfaI	CTAG	3 cut(s)	200, 212, 671
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	3 cut(s)	239, 458, 494
BmgT120I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
BmiI	GGNNCC	4 cut(s)	366, 459, 496, 530
BmrFI	CCNGG	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	2 cut(s)	76, 323
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	175, 600
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	550, 566
BseNI	ACTGG	2 cut(s)	175, 600
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	552
BseYI	CCCAGC	1 cut(s)	513
BsgI	GTGCAG	2 cut(s)	419, 576
BshFI	GGCC	2 cut(s)	106, 366
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	51, 73, 107
BslFI	GGGAC	2 cut(s)	480, 496
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	52, 332
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	480, 496
BsnI	GGCC	2 cut(s)	106, 366
Bso31I	GGTCTC	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	81, 368
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	4, 332
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	203, 237
BspANI	GGCC	2 cut(s)	106, 366
BspCNI	CTCAG	2 cut(s)	549, 565
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	4 cut(s)	366, 459, 496, 530
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	12, 340
BspTNI	GGTCTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	175, 600
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	4, 332
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	133, 357, 442, 665
BstC8I	GCNNGC	2 cut(s)	201, 300
BstDEI	CTNAG	2 cut(s)	536, 552
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	2 cut(s)	7, 335
BstMAI	GTCTC	2 cut(s)	52, 332
BstMBI	GATC	2 cut(s)	4, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	4, 332
BstYI	RGATCY	2 cut(s)	4, 332
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	106, 366
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	3 cut(s)	129, 407, 593
Cac8I	GCNNGC	2 cut(s)	201, 300
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
Csp6I	GTAC	2 cut(s)	353, 657
CviAII	CATG	5 cut(s)	34, 245, 256, 388, 465
CviQI	GTAC	2 cut(s)	353, 657
DdeI	CTNAG	2 cut(s)	536, 552
DpnI	GATC	2 cut(s)	6, 334
DpnII	GATC	2 cut(s)	4, 332
DraIII	CACNNNGTG	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	81, 368
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	3 cut(s)	239, 458, 494
Eco53kI	GAGCTC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	2 cut(s)	365, 458
EcoO65I	GGTNACC	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	2 cut(s)	81, 368
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	37, 248, 259, 391, 468
FaqI	GGGAC	2 cut(s)	480, 496
FatI	CATG	5 cut(s)	33, 244, 255, 387, 464
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	2 cut(s)	81, 368
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	3 cut(s)	200, 212, 671
GluI	GCNGC	1 cut(s)	541
GsaI	CCCAGC	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	106, 366
HapII	CCGG	3 cut(s)	51, 73, 107
Hin1II	CATG	5 cut(s)	37, 248, 259, 391, 468
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	14, 38, 288
HpaII	CCGG	3 cut(s)	51, 73, 107
HphI	GGTGA	2 cut(s)	62, 659
Hpy166II	GTNNAC	2 cut(s)	384, 415
Hpy188I	TCNGA	2 cut(s)	332, 487
Hpy188III	TCNNGA	2 cut(s)	51, 624
Hpy8I	GTNNAC	2 cut(s)	384, 415
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	33, 471
HpyCH4III	ACNGT	4 cut(s)	133, 357, 442, 665
HpyCH4V	TGCA	5 cut(s)	259, 280, 343, 400, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	536, 552
Hsp92II	CATG	5 cut(s)	37, 248, 259, 391, 468
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	4, 332
LmnI	GCTCC	3 cut(s)	76, 262, 534
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	2 cut(s)	76, 323
MaeI	CTAG	3 cut(s)	200, 212, 671
MaeIII	GTNAC	2 cut(s)	632, 665
MalI	GATC	2 cut(s)	6, 334
MboI	GATC	2 cut(s)	4, 332
MfeI	CAATTG	4 cut(s)	138, 231, 321, 446
MflI	RGATCY	2 cut(s)	4, 332
MhlI	GDGCHC	2 cut(s)	81, 368
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	57, 96, 200, 378, 559, 561, 618
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	4 cut(s)	89, 119, 419, 685
MspI	CCGG	3 cut(s)	51, 73, 107
MspR9I	CCNGG	1 cut(s)	74
MunI	CAATTG	4 cut(s)	138, 231, 321, 446
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	4, 332
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	37, 248, 259, 391, 468
NlaIV	GGNNCC	4 cut(s)	366, 459, 496, 530
NmuCI	GTSAC	1 cut(s)	665
NspI	RCATGY	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	14, 38
PkrI	GCNGC	1 cut(s)	542
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	458
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	513
PspN4I	GGNNCC	4 cut(s)	366, 459, 496, 530
PspOMI	GGGCCC	1 cut(s)	364
PspPI	GGNCC	5 cut(s)	239, 364, 365, 458, 494
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	4, 332
RsaI	GTAC	2 cut(s)	354, 658
RsaNI	GTAC	2 cut(s)	353, 657
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	89, 119, 419, 685
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	2 cut(s)	4, 332
Sau96I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	81, 368
SetI	ASST	9 cut(s)	81, 211, 267, 379, 523, 558, 606, 631, 672
SfaNI	GCATC	2 cut(s)	76, 323
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	3 cut(s)	239, 458, 494
SsiI	CCGC	2 cut(s)	203, 237
SspMI	CTAG	3 cut(s)	200, 212, 671
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	4 cut(s)	133, 357, 442, 665
TaqI	TCGA	1 cut(s)	81
TatI	WGTACW	2 cut(s)	352, 656
TfiI	GAWTC	2 cut(s)	14, 38
Tru1I	TTAA	4 cut(s)	89, 119, 419, 685
Tru9I	TTAA	4 cut(s)	89, 119, 419, 685
TscAI	CASTG	3 cut(s)	136, 407, 600
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	261, 404, 453, 607
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	136, 407, 600
VpaK11BI	GGWCC	3 cut(s)	239, 458, 494
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	3 cut(s)	200, 212, 671
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.