Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018540

Physical Location & Seq

Genomic Coordinates Reverse (-)

10457295 .. 10459792

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACAAGGCCAGTAAAGACATTAAAGTATTTCACTGTGGCAATTGGCGGGCATGTTCGGCAATTTATGGCAACAGGTGGTTCGTTTGTGCTGTTTATTATGCTAGCAGGAGGTATAGGAATTGCTACTATGATAATTGGCAGACCTCATGAAAAGCACATGCAGGAGCTTCTCCGTTATCTCCAATTTGGACTATGGTGGCTGGCTCTTGGTGTAGCATCATCAATTGGTCTTGGTAAGTATGACAGCTGCTGGCAAGATTTCTTAGAGGAGAGCTTGTCGTGGCTAGGTTTACAGAATCTGAGCATCAACGAGATTCTGTTCCCGATCGAGCGTAGACTCGTTGACCGAGTCTTCTACGGCCTCTCCTCCGCCGCTGACCTCTCGTTCATGGAGGTAATTGCTTCTCTTATGCAGCATGCCCCGACCAAGTTTGGGAGGTTAGATTATGTTAAAAAGTCTACTCGGCTGGACAGGTACCATTGCCCAGATCGTGAGAACCCCGCTGAGTTTCTAGCTGATCTTATATTTGTTGACTACAGCTCACTGAAAGTGTCTACTCCTTTCAGAAAAGAAAGATGCTCTTGCAACTCCAATTACATTAAGGGAAATCTCCAAGAACAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

8.66

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018540)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g16400
rosa_laevigata	RLG00000006783
rosa_multiflora	Rmu_sc0002169.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007500 Rroxscaffold_2G00084800 Rroxscaffold_3G00232930 Rroxscaffold_5G00350610 Rroxscaffold_7G00165770
rosa_wichuraiana	Rw1G015190 Rw4G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AccI	GTMKAC	3 cut(s)	337, 461, 557
AciI	CCGC	4 cut(s)	48, 372, 375, 504
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	435
AluBI	AGCT	5 cut(s)	169, 249, 276, 518, 543
AluI	AGCT	5 cut(s)	169, 249, 276, 518, 543
AlwNI	CAGNNNCTG	2 cut(s)	252, 301
AoxI	GGCC	2 cut(s)	8, 361
ApeKI	GCWGC	2 cut(s)	249, 415
Asp718I	GGTACC	1 cut(s)	477
AsuNHI	GCTAGC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	236, 427
BceAI	ACGGC	1 cut(s)	376
BfaI	CTAG	4 cut(s)	104, 287, 515, 628
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	3 cut(s)	250, 375, 416
BlsI	GCNGC	3 cut(s)	251, 376, 417
BmiI	GGNNCC	1 cut(s)	479
BmsI	GCATC	3 cut(s)	227, 315, 569
BmtI	GCTAGC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	346
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	293, 498
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	284, 358
BseXI	GCAGC	2 cut(s)	236, 427
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	10, 363
BshNI	GGYRCC	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	435
BsnI	GGCC	2 cut(s)	10, 363
Bsp143I	GATC	3 cut(s)	327, 490, 520
BspACI	CCGC	4 cut(s)	48, 372, 375, 504
BspANI	GGCC	2 cut(s)	10, 363
BspCNI	CTCAG	2 cut(s)	294, 499
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	3 cut(s)	327, 490, 520
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	5 cut(s)	50, 105, 204, 254, 420
BstDEI	CTNAG	3 cut(s)	265, 302, 507
BstKTI	GATC	3 cut(s)	330, 493, 523
BstMBI	GATC	3 cut(s)	327, 490, 520
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	3 cut(s)	56, 163, 422
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	236, 427
BstV2I	GAAGAC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	10, 363
BtsIMutI	CAGTG	2 cut(s)	33, 545
Cac8I	GCNNGC	5 cut(s)	50, 105, 204, 254, 420
CaiI	CAGNNNCTG	2 cut(s)	252, 301
CciI	TCATGA	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	5 cut(s)	53, 149, 160, 391, 419
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	3 cut(s)	265, 302, 507
DpnI	GATC	3 cut(s)	329, 492, 522
DpnII	GATC	3 cut(s)	327, 490, 520
EciI	GGCGGA	1 cut(s)	361
FaeI	CATG	5 cut(s)	56, 152, 163, 394, 422
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FatI	CATG	5 cut(s)	52, 148, 159, 390, 418
FauI	CCCGC	2 cut(s)	41, 511
FblI	GTMKAC	3 cut(s)	337, 461, 557
Fnu4HI	GCNGC	3 cut(s)	250, 375, 416
Fsp4HI	GCNGC	3 cut(s)	250, 375, 416
FspBI	CTAG	4 cut(s)	104, 287, 515, 628
GluI	GCNGC	3 cut(s)	250, 375, 416
HaeIII	GGCC	2 cut(s)	10, 363
Hin1II	CATG	5 cut(s)	56, 152, 163, 394, 422
HincII	GTYRAC	2 cut(s)	346, 535
HindII	GTYRAC	2 cut(s)	346, 535
HinfI	GANTC	4 cut(s)	298, 316, 339, 351
Hpy166II	GTNNAC	6 cut(s)	293, 338, 346, 462, 535, 558
Hpy188I	TCNGA	2 cut(s)	303, 569
Hpy188III	TCNNGA	3 cut(s)	149, 325, 494
Hpy8I	GTNNAC	6 cut(s)	293, 338, 346, 462, 535, 558
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	163, 415, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	265, 302, 507
Hsp92II	CATG	5 cut(s)	56, 152, 163, 394, 422
KpnI	GGTACC	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	327, 490, 520
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	24, 60, 93, 149, 188, 238, 455, 460, 501
Lsp1109I	GCAGC	2 cut(s)	236, 427
LweI	GCATC	3 cut(s)	227, 315, 569
MaeI	CTAG	4 cut(s)	104, 287, 515, 628
MalI	GATC	3 cut(s)	329, 492, 522
MboI	GATC	3 cut(s)	327, 490, 520
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	2 cut(s)	42, 225
MluCI	AATT	8 cut(s)	42, 62, 120, 135, 185, 225, 399, 595
MlyI	GAGTC	2 cut(s)	333, 360
MnlI	CCTC	8 cut(s)	104, 156, 262, 374, 379, 388, 392, 432
MseI	TTAA	3 cut(s)	23, 453, 603
MspA1I	CMGCKG	3 cut(s)	249, 377, 506
MunI	CAATTG	2 cut(s)	42, 225
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	327, 490, 520
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	5 cut(s)	56, 152, 163, 394, 422
NlaIV	GGNNCC	1 cut(s)	479
NmeAIII	GCCGAG	1 cut(s)	445
NspI	RCATGY	3 cut(s)	56, 163, 422
PaeI	GCATGC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	298, 316
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	251, 376, 417
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	2 cut(s)	333, 359
PpsI	GAGTC	2 cut(s)	333, 359
PspN4I	GGNNCC	1 cut(s)	479
PstNI	CAGNNNCTG	2 cut(s)	252, 301
PsyI	GACNNNGTC	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	3 cut(s)	23, 453, 603
SatI	GCNGC	3 cut(s)	250, 375, 416
Sau3AI	GATC	3 cut(s)	327, 490, 520
SchI	GAGTC	2 cut(s)	333, 360
SfaNI	GCATC	3 cut(s)	227, 315, 569
SfcI	CTRYAG	1 cut(s)	538
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	8 cut(s)	42, 62, 120, 135, 185, 225, 399, 595
SsiI	CCGC	4 cut(s)	48, 372, 375, 504
SspMI	CTAG	4 cut(s)	104, 287, 515, 628
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	8 cut(s)	42, 62, 120, 135, 185, 225, 399, 595
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	298, 316
Tru1I	TTAA	3 cut(s)	23, 453, 603
Tru9I	TTAA	3 cut(s)	23, 453, 603
TscAI	CASTG	2 cut(s)	40, 552
TseI	GCWGC	2 cut(s)	249, 415
TspDTI	ATGAA	2 cut(s)	165, 379
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	40, 552
Tth111I	GACNNNGTC	1 cut(s)	350
XceI	RCATGY	3 cut(s)	56, 163, 422
XmiI	GTMKAC	3 cut(s)	337, 461, 557
XspI	CTAG	4 cut(s)	104, 287, 515, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.