Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001390

Physical Location & Seq

Genomic Coordinates Forward (+)

13029417 .. 13030476

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAGATTTTACAGGCCAATTCCGGTGTGCTTACCAATTTTGATGTGCTCAACTTTCTAAAGTCCAAAGGGGCTTCAAAAGATCTAGCACGGGTTCTTGCTAATGTAGCGCCATCCGAGTATAAGGTTTTTGATTACTTGGTTGCGACTCCTGCTTGTACTCAGACAAGAGAGAGTATTGATGAGTTCAAGGAGAAGTGTAGGGAATATGACCTTGCAGAAGCTGAGGTGCTCAATATCATCAACGCTAGGCCATATAACGTCGTTGGAATCTTCCCGGACTTGGGATCAAAACAAAGCTGCCTTATTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005886 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009360 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030424 GO:0030425 GO:0030880 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0036477 GO:0042575 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097447 GO:0097458 GO:0097659 GO:0097747 GO:0120025 GO:0120038 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

105

Amino Acids

11.59

Weight (kDa)

6.24

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb4	PF03874	11 - 89	4e-06	RNA polymerase Rpb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950
fragaria_vesca	FvH4_4g01070 FvH4_4g01070 FvH4_5g27570
malus_domestica	MD13G1198900.v1.1
prunus_persica	Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1
pyrus_communis	pycom13g17270
rosa_chinensis	RchiOBHm_Chr4g0387641 RchiOBHm_Chr6g0280701
rosa_laevigata	RLG00000010104 RLG00000013035
rosa_multiflora	Rmu_sc0000976.1_g000021 Rmu_sc0003953.1_g000006
rosa_roxburghii	Rroxscaffold_7G00187720
rosa_rugosa	Rorug03G0311800 Rorug03G0311900 Rorug03G0312000 Rorug03G0312100 Rorug06G0133900 Rorug06G0133900 Rorug06G0133900 Rorug06G0134000
rosa_samantha	Rh4AG017400 Rh4BG012200 Rh4CG018600 Rh4DG013200 Rh6AG246600 Rh6BG248900 Rh6CG250000 Rh6DG241500
rosa_wichuraiana	Rw4G001120 Rw6G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	283, 284
AgsI	TTSAA	2 cut(s)	78, 190
AluBI	AGCT	2 cut(s)	224, 300
AluI	AGCT	2 cut(s)	224, 300
Alw21I	GWGCWC	2 cut(s)	51, 234
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	15, 251
ApeKI	GCWGC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	278
Bbv12I	GWGCWC	2 cut(s)	51, 234
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	2 cut(s)	86, 249
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 284
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	283, 284
BseMII	CTCAG	2 cut(s)	176, 216
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	17, 253
BsiHKAI	GWGCWC	2 cut(s)	51, 234
BsiSI	CCGG	2 cut(s)	24, 278
BslI	CCNNNNNNNGG	2 cut(s)	283, 284
BsnI	GGCC	2 cut(s)	17, 253
Bsp1286I	GDGCHC	2 cut(s)	51, 234
Bsp143I	GATC	2 cut(s)	82, 287
BspANI	GGCC	2 cut(s)	17, 253
BspCNI	CTCAG	2 cut(s)	175, 217
BspPI	GGATC	1 cut(s)	295
BssMI	GATC	2 cut(s)	82, 287
BstDEI	CTNAG	2 cut(s)	162, 225
BstF5I	GGATG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	85, 290
BstMBI	GATC	2 cut(s)	82, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 152, 309
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	17, 253
BtsCI	GGATG	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	159
CviJI	RGCY	5 cut(s)	17, 74, 224, 253, 300
CviKI_1	RGCY	5 cut(s)	17, 74, 224, 253, 300
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	162, 225
DpnI	GATC	2 cut(s)	84, 289
DpnII	GATC	2 cut(s)	82, 287
FaiI	YATR	4 cut(s)	123, 210, 256, 258
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	86, 249
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	17, 253
HapII	CCGG	2 cut(s)	24, 278
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	148, 270
HpaII	CCGG	2 cut(s)	24, 278
Hpy188I	TCNGA	2 cut(s)	118, 165
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 152, 309
HpyF3I	CTNAG	2 cut(s)	162, 225
HpySE526I	ACGT	1 cut(s)	261
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	82, 287
LpnPI	CCDG	3 cut(s)	37, 165, 291
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	86, 249
MaeII	ACGT	1 cut(s)	261
MalI	GATC	2 cut(s)	84, 289
MboI	GATC	2 cut(s)	82, 287
MboII	GAAGA	2 cut(s)	16, 265
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	51, 234
MluCI	AATT	2 cut(s)	19, 37
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	1 cut(s)	220
MspI	CCGG	2 cut(s)	24, 278
MspR9I	CCNGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	107, 152, 309
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	82, 287
PfeI	GAWTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	2 cut(s)	82, 287
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	51, 234
SetI	ASST	6 cut(s)	129, 216, 226, 231, 264, 302
Sse9I	AATT	2 cut(s)	19, 37
SspMI	CTAG	2 cut(s)	86, 249
StyD4I	CCNGG	1 cut(s)	276
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	19, 37
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	2 cut(s)	86, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.