Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002463

Physical Location & Seq

Genomic Coordinates Forward (+)

23412533 .. 23414231

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g26960.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAATTTGTAAGATCAGAAGTCCGGGAATTTTTACTTGGTTTGTATACCCTGGGTAGTACTGAAGAGTCTCGGCAGCAGTTGCGGATAGTCCGGAAGTCGAGTTCTTTCTTCTTGTTTTATTTATTATATTTTTATTTAAATCTCTTGTACTTCTGGGAAAGTGATTATGTTCCCTGGGAAAGTGATCACTTATTCCAGTTACGTATTCAGGGTGACGGGTTATATGGCTTGTCATGCATATCACTCGATCTCAACCTGTTGATATTTTGCTTGTGCTATGAAAGTAGATGGCAAACCAGGTCTCATCTTTTGATAATACTAACAAACTATAGAATTATTGTGATAGGAAGAATAATTGTACAGATACATCAATGCATTGTATGGGAGAGCACAAATAGTGTAGCATATGATTCTTCTTGTTTCATGCACACTTCAGGGCCACATAACTGCTGCTCCCCAAAGCTAGGGAGCAAAGCAGATGGAACGAAACATTTGTTTGGAAAGAGTGAAGAAGATAAGAGTGAAGAAGATAAAAATGAAGGTGGAGTGCATGATGATGAATTTTCCTCACAACATAAGTCCAGGTCGAAAAAGGACAGCATGCATGGTTTTCAAGTCAATAACAATGTAGATTTACCCATTAACTCTGAAATTAAATTGGTTTCTACTGATGCCCATCAATCTGTGACGCAGTCCAGTAATATGGGTAATAAGACAGAAATGGTAAACAGGTTTAGAGTATCAGATGTACCAGAAACAGAATTTAGAAAGACAACCATTTGGACTCTCCGCAGAAAAGATAAGTTTTCCTTTCTTCCTTATTCTTGTATTTTCATACTTTTTTATGGAGGTGGGAAATTAACTCATTCTCATCAATGGATATTTATAAAGAATTATTTTAAGTTGATAAAATCTGCCTTTTTTCAGTTGTTGATGTTGTTAGTGTTCTTGGAAATTCTAAGATTGGTTTACAAAAGACTGATTTTGATATTCTCTTCCTTGCAAATTAGTAGAGGAATATATGTCAGTATCCCAGTAACTACACAGCTGGAATTTTCACAATTACAATCAAATGATCGATCGGAGGTCGTTTACCTTACATCATTTTGCCTTACACTTATCAATATTCTAGACCAAGTGAATACACAATTTAGGAAAAGGCTTATTCCTAAAATATTTGTCTATGAGATAGTTGAACCTATCCCTTGCCAAAGCTTTGGTGTAGATGTCTGCACCTTCTTATTTGTAGGACAATATACGCTAAGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030659 GO:0030695 GO:0031090 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

425

Amino Acids

49.47

Weight (kDa)

8.52

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43490 AT2G43490 AT2G43490 AT2G43490 AT2G43490 AT2G43490 AT2G43490 AT2G43490
malus_domestica	MD04G1046500.v1.1
prunus_persica	Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1 Prupe.1G200000_v2.0.a1
pyrus_communis	pycom04g04040 pycom13g26960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AccI	GTMKAC	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	2 cut(s)	85, 793
AcsI	RAATTY	6 cut(s)	5, 29, 563, 764, 957, 1055
AcuI	CTGAAG	2 cut(s)	84, 420
AfaI	GTAC	4 cut(s)	61, 152, 363, 753
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	617, 1199
AjnI	CCWGG	4 cut(s)	51, 176, 299, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	3 cut(s)	466, 1051, 1218
AluI	AGCT	3 cut(s)	466, 1051, 1218
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	75, 309
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	76, 453
ApoI	RAATTY	6 cut(s)	5, 29, 563, 764, 957, 1055
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	88, 440
BccI	CCATC	3 cut(s)	285, 476, 687
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	4 cut(s)	53, 178, 301, 586
BciVI	GTATCC	1 cut(s)	1043
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	75, 309
BfaI	CTAG	2 cut(s)	467, 1133
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	1043
BisI	GCNGC	2 cut(s)	77, 454
BlsI	GCNGC	2 cut(s)	78, 455
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	5 cut(s)	26, 53, 178, 301, 586
BmgT120I	GGNCC	1 cut(s)	440
BmrFI	CCNGG	5 cut(s)	26, 53, 178, 301, 586
BmrI	ACTGGG	1 cut(s)	1031
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	1031
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	1081
BsaAI	YACGTR	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	51, 52, 176, 177
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	199, 699, 1037
Bse8I	GATNNNNATC	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	4 cut(s)	53, 178, 301, 586
BseCI	ATCGAT	1 cut(s)	1081
BseDI	CCNNGG	4 cut(s)	51, 52, 176, 177
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	199, 699, 1037
BseXI	GCAGC	2 cut(s)	88, 440
BsgI	GTGCAG	1 cut(s)	1219
Bsh1285I	CGRYCG	1 cut(s)	1085
BshFI	GGCC	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	1081
BsiEI	CGRYCG	1 cut(s)	1085
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	25, 94
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	75, 309
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp13I	TCCGGA	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	14, 187, 250, 1078, 1082
BspACI	CCGC	2 cut(s)	85, 793
BspANI	GGCC	1 cut(s)	442
BspDI	ATCGAT	1 cut(s)	1081
BspEI	TCCGGA	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	199, 699, 1037
BssECI	CCNNGG	4 cut(s)	51, 52, 176, 177
BssMI	GATC	5 cut(s)	14, 187, 250, 1078, 1082
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	4 cut(s)	53, 178, 301, 586
Bst6I	CTCTTC	2 cut(s)	60, 1003
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	2 cut(s)	962, 1265
BstKTI	GATC	5 cut(s)	17, 190, 253, 1081, 1085
BstMAI	GTCTC	2 cut(s)	75, 309
BstMBI	GATC	5 cut(s)	14, 187, 250, 1078, 1082
BstMCI	CGRYCG	1 cut(s)	1085
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 237
BstNI	CCWGG	4 cut(s)	53, 178, 301, 586
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	5 cut(s)	24, 51, 176, 299, 584
BstSFI	CTRYAG	1 cut(s)	331
BstSNI	TACGTA	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	88, 440
BstXI	CCANNNNNNTGG	2 cut(s)	706, 1220
BstZ17I	GTATAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	1081
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	1081
Cac8I	GCNNGC	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	1081
CseI	GACGC	1 cut(s)	700
CsiI	ACCWGGT	1 cut(s)	299
Csp6I	GTAC	4 cut(s)	60, 151, 362, 752
CviAII	CATG	5 cut(s)	237, 427, 554, 604, 608
CviJI	RGCY	6 cut(s)	231, 442, 466, 1051, 1165, 1218
CviKI_1	RGCY	6 cut(s)	231, 442, 466, 1051, 1165, 1218
CviQI	GTAC	4 cut(s)	60, 151, 362, 752
DdeI	CTNAG	2 cut(s)	962, 1265
DpnI	GATC	5 cut(s)	16, 189, 252, 1080, 1084
DpnII	GATC	5 cut(s)	14, 187, 250, 1078, 1082
DraI	TTTAAA	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	60, 1003
EarI	CTCTTC	2 cut(s)	60, 1003
Eco105I	TACGTA	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	84, 420
EcoRII	CCWGG	4 cut(s)	51, 176, 299, 584
EcoT22I	ATGCAT	3 cut(s)	242, 380, 609
FaeI	CATG	5 cut(s)	240, 430, 557, 607, 611
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	5 cut(s)	236, 426, 553, 603, 607
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	77, 454
Fsp4HI	GCNGC	2 cut(s)	77, 454
FspBI	CTAG	2 cut(s)	467, 1133
GluI	GCNGC	2 cut(s)	77, 454
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	25, 94
HgaI	GACGC	1 cut(s)	700
Hin1II	CATG	5 cut(s)	240, 430, 557, 607, 611
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	3 cut(s)	68, 413, 787
HpaII	CCGG	2 cut(s)	25, 94
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	4 cut(s)	48, 730, 973, 1096
Hpy188I	TCNGA	4 cut(s)	19, 652, 748, 1087
Hpy188III	TCNNGA	2 cut(s)	94, 1133
Hpy8I	GTNNAC	4 cut(s)	48, 730, 973, 1096
HpyAV	CCTTC	2 cut(s)	536, 1249
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	7 cut(s)	240, 378, 430, 553, 607, 1006, 1236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 237
HpyF3I	CTNAG	2 cut(s)	962, 1265
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	240, 430, 557, 607, 611
Kpn2I	TCCGGA	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	14, 187, 250, 1078, 1082
LmnI	GCTCC	2 cut(s)	461, 471
Lsp1109I	GCAGC	2 cut(s)	88, 440
LweI	GCATC	1 cut(s)	664
MabI	ACCWGGT	1 cut(s)	299
MaeI	CTAG	2 cut(s)	467, 1133
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	4 cut(s)	201, 215, 688, 1039
MalI	GATC	5 cut(s)	16, 189, 252, 1080, 1084
MboI	GATC	5 cut(s)	14, 187, 250, 1078, 1082
MhlI	GDGCHC	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	77, 781
MnlI	CCTC	4 cut(s)	580, 845, 1010, 1081
Mph1103I	ATGCAT	3 cut(s)	242, 380, 609
MroI	TCCGGA	1 cut(s)	93
MseI	TTAA	5 cut(s)	140, 645, 657, 863, 903
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	1051
MspI	CCGG	2 cut(s)	25, 94
MspR9I	CCNGG	5 cut(s)	26, 53, 178, 301, 586
MvaI	CCWGG	4 cut(s)	53, 178, 301, 586
MwoI	GCNNNNNNNGC	2 cut(s)	82, 237
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	5 cut(s)	14, 187, 250, 1078, 1082
NlaIII	CATG	5 cut(s)	240, 430, 557, 607, 611
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	215, 688
NsiI	ATGCAT	3 cut(s)	242, 380, 609
NspI	RCATGY	1 cut(s)	607
PaeI	GCATGC	1 cut(s)	607
PasI	CCCWGGG	2 cut(s)	52, 177
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	694
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	78, 455
Ple19I	CGATCG	1 cut(s)	1085
PleI	GAGTC	2 cut(s)	76, 781
PpsI	GAGTC	2 cut(s)	76, 781
Ppu21I	YACGTR	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	890
Psp6I	CCWGG	4 cut(s)	51, 176, 299, 584
PspGI	CCWGG	4 cut(s)	51, 176, 299, 584
PspPI	GGNCC	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1051
RsaI	GTAC	4 cut(s)	61, 152, 363, 753
RsaNI	GTAC	4 cut(s)	60, 151, 362, 752
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	5 cut(s)	140, 645, 657, 863, 903
SatI	GCNGC	2 cut(s)	77, 454
Sau3AI	GATC	5 cut(s)	14, 187, 250, 1078, 1082
Sau96I	GGNCC	1 cut(s)	440
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	2 cut(s)	77, 781
ScrFI	CCNGG	5 cut(s)	26, 53, 178, 301, 586
SduI	GDGCHC	1 cut(s)	395
SexAI	ACCWGGT	1 cut(s)	299
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	331
SmiI	ATTTAAAT	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	558
SnaBI	TACGTA	1 cut(s)	206
SphI	GCATGC	1 cut(s)	607
SsiI	CCGC	2 cut(s)	85, 793
SspI	AATATT	2 cut(s)	1129, 1179
SspMI	CTAG	2 cut(s)	467, 1133
StyD4I	CCNGG	5 cut(s)	24, 51, 176, 299, 584
SwaI	ATTTAAAT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	5 cut(s)	101, 249, 590, 1081, 1270
TatI	WGTACW	3 cut(s)	59, 150, 361
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	5 cut(s)	140, 645, 657, 863, 903
Tru9I	TTAA	5 cut(s)	140, 645, 657, 863, 903
TseFI	GTSAC	2 cut(s)	215, 688
TseI	GCWGC	2 cut(s)	76, 453
Tsp45I	GTSAC	2 cut(s)	215, 688
TspDTI	ATGAA	6 cut(s)	17, 297, 415, 555, 576, 826
Tth111I	GACNNNGTC	1 cut(s)	694
XapI	RAATTY	6 cut(s)	5, 29, 563, 764, 957, 1055
XbaI	TCTAGA	1 cut(s)	1132
XceI	RCATGY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	467, 1133
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	3 cut(s)	242, 380, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.