pycom14g00110

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
66099 .. 69848
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1353 bp
ATGAGGGAGATAATAAGCTTACACATCGGACAGGCAGGGATCCAAGTTGGGAATGCGTGCTGGGAGCTCTACTGCCTTGAACATGGCATTCAGCCTGATGGTATGATGCCCAGCGACACCTCTGTTGGCGCTGCAACCGATTCTTTTAACACCTTCTTCAGCGAAACTGGTTCTGGAAATCATGTGCCCAGAGCCATATTTGTTGATCTTGAACCGACGGTTATTGATGAAGTCAGGACTGGGACTTACAGACAACTTTTTCATCCCGAGCAACTTATTTCTGGCAAAGAAGATGCTGCGAACAATTTTGCCCGAGGACACTACACAGTGGGGAAGGACATTGTGGACCTATGCCTTGACAGGGTAAGAAAATTAGCTGATAATTGCACAGGCCTGCAAGGGTTTTTGGTATTTAACGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCCTTACTTCTCGAACGATTGTCTCTTGATTATGGAAAGAAGTCAAAGCTCGGTTTCACGATTTATCCTTCTCCTCAGGTCTCCACTGCTGTGGTAGAACCTTATAATAGCGTGCTCTCCACACATTCTCTCCTTGAACATACAGACGTTGCTGTGCTTCTGGACAATGAAGCCATTTATGATATCTGTAGGAGATCTTTAGACATTGAAAGGCCAACCTACACCAACTTGAATCGTTTAATATCCCAAACAATATCTTCTTTGACAACTTCATTGAGGTTTGACGGTGCCATTAATGTGGACATTACGGAGTTTCAAACTAATCTGGTTCCATATCCTCGTATCCACTTTATGCTCTCATCTTATGCCCCTGTAATCTCTGCTGCAAAGGCCTACCATGAGCAACTGTCAGTTCCTGAGATCGATCACAGTTCTGTATTTGAGCCCTCAAGTATGATGGCCAAGTGTGATCCAAGACATGGGAAGTACATGGCATGCTGCTTGATGTACCGTGGTGACGTTGTACCGAAGGATGTAAATGCTGCTGTAGCTACCATTAAGACAAAGCGGACAGTTCAGTTTGTGGACTGGTGCCCAACTGGTTTCAAATGCGGTATTAACTACCAGCCCCCGACAGTTGTACCAGGTGGTGATCTTGCCAAGGTGCAACGAGCAGTTTGTATGATAAGCAACAACACTGCAGTAGCTGAGGTCTTCTCCCGAATTGACCATAAATTTGACCTTATGTATTCCAAGCGGGCATTTGTGCATTGGTATGTAGGTGAAGGGATGGAGGAAGGTGAATTCTCAGAAGCCCGTGAGGATCTTGCTGCTCTTGAAAAAGACTACGAGGAAGTTGGGGCAGAAGGCGCTGATGATGAAGAGGAAGGGGAAGATTACTAA

Protein Analysis

451

Amino Acids

49.66

Weight (kDa)

4.91

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 1.3e-61 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 393 3.9e-49 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64740
malus_domestica MD12G1004700.v1.1 MD14G1003200.v1.1
prunus_persica Prupe.7G005100_v2.0.a1
pyrus_communis pycom12g00380 pycom14g00110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AccB1I GGYRCC 2 cut(s) 737, 1041
AccB7I CCANNNNNTGG 1 cut(s) 929
AciI CCGC 3 cut(s) 1018, 1062, 1207
AclWI GGATC 4 cut(s) 34, 47, 914, 1281
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 2 cut(s) 1184, 1253
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 4 cut(s) 938, 959, 975, 1092
AfiI CCNNNNNNNGG 2 cut(s) 361, 929
AgsI TTSAA 8 cut(s) 80, 212, 587, 659, 682, 767, 1057, 1289
AjnI CCWGG 1 cut(s) 1093
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 6 cut(s) 18, 67, 377, 499, 1001, 1157
AluI AGCT 6 cut(s) 18, 67, 377, 499, 1001, 1157
Alw21I GWGCWC 2 cut(s) 69, 567
Alw26I GTCTC 2 cut(s) 477, 535
AlwI GGATC 4 cut(s) 34, 47, 914, 1281
AlwNI CAGNNNCTG 2 cut(s) 866, 1157
Ama87I CYCGRG 2 cut(s) 266, 312
AoxI GGCC 4 cut(s) 391, 662, 840, 909
ApeKI GCWGC 6 cut(s) 131, 296, 833, 948, 992, 1280
ApoI RAATTY 2 cut(s) 1184, 1253
ArsI GACNNNNNNTTYG 2 cut(s) 1169, 1201
AseI ATTAAT 1 cut(s) 744
AspLEI GCGC 2 cut(s) 131, 1322
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 977, 1112, 1244, 1262
AvaI CYCGRG 2 cut(s) 266, 312
AvaII GGWCC 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 525
BaeGI GKGCMC 2 cut(s) 189, 1046
BaeI ACNNNNGTAYC 2 cut(s) 1074, 1107
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 737, 1041
BanII GRGCYC 2 cut(s) 69, 897
BbsI GAAGAC 1 cut(s) 1156
Bbv12I GWGCWC 2 cut(s) 69, 567
BbvCI CCTCAGC 1 cut(s) 1158
BbvI GCAGC 6 cut(s) 118, 283, 820, 935, 979, 1267
BccI CCATC 3 cut(s) 92, 901, 1234
BciT130I CCWGG 1 cut(s) 1095
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 477, 535
BfmI CTRYAG 3 cut(s) 637, 996, 1149
BfoI RGCGCY 2 cut(s) 132, 1323
BfuI GTATCC 1 cut(s) 803
BglII AGATCT 1 cut(s) 644
BisI GCNGC 6 cut(s) 132, 297, 834, 949, 993, 1281
BlsI GCNGC 6 cut(s) 133, 298, 835, 950, 994, 1282
Bme1390I CCNGG 1 cut(s) 1095
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 2 cut(s) 266, 312
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 5 cut(s) 41, 451, 739, 780, 1043
BmrFI CCNGG 1 cut(s) 1095
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 96, 283
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 1156
BplI GAGNNNNNCTC 2 cut(s) 1151, 1183
Bpu10I CCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 1 cut(s) 883
Bsa29I ATCGAT 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 313, 961, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 929
Bse1I ACTGG 5 cut(s) 172, 244, 439, 1043, 1054
Bse21I CCTNAGG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 1095
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 3 cut(s) 313, 961, 1110
BseGI GGATG 3 cut(s) 262, 988, 1245
BseLI CCNNNNNNNGG 2 cut(s) 361, 929
BseMII CTCAG 4 cut(s) 539, 858, 1149, 1272
BseNI ACTGG 5 cut(s) 172, 244, 439, 1043, 1054
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 2 cut(s) 189, 1046
BseXI GCAGC 6 cut(s) 118, 283, 820, 935, 979, 1267
BseYI CCCAGC 2 cut(s) 60, 110
BshFI GGCC 4 cut(s) 393, 664, 842, 911
BshNI GGYRCC 2 cut(s) 737, 1041
BshVI ATCGAT 1 cut(s) 873
BsiHKAI GWGCWC 2 cut(s) 69, 567
BsiHKCI CYCGRG 2 cut(s) 266, 312
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 361, 929
BsmAI GTCTC 2 cut(s) 477, 535
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 58, 87
BsnI GGCC 4 cut(s) 393, 664, 842, 911
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 2 cut(s) 266, 312
Bsp1286I GDGCHC 5 cut(s) 69, 189, 567, 897, 1046
Bsp143I GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
BspACI CCGC 3 cut(s) 1018, 1062, 1207
BspANI GGCC 4 cut(s) 393, 664, 842, 911
BspCNI CTCAG 4 cut(s) 538, 859, 1150, 1271
BspDI ATCGAT 1 cut(s) 873
BspLI GGNNCC 5 cut(s) 41, 451, 739, 780, 1043
BspMAI CTGCAG 1 cut(s) 1153
BspPI GGATC 4 cut(s) 34, 47, 914, 1281
BspT107I GGYRCC 2 cut(s) 737, 1041
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 5 cut(s) 172, 244, 439, 1043, 1054
BssECI CCNNGG 3 cut(s) 313, 961, 1110
BssMI GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 1 cut(s) 1095
Bst4CI ACNGT 8 cut(s) 220, 328, 737, 858, 881, 962, 1024, 1087
Bst6I CTCTTC 1 cut(s) 1326
BstC8I GCNNGC 5 cut(s) 58, 395, 563, 946, 1209
BstDEI CTNAG 4 cut(s) 525, 867, 1158, 1258
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 3 cut(s) 262, 988, 1245
BstH2I RGCGCY 2 cut(s) 132, 1323
BstHHI GCGC 2 cut(s) 131, 1322
BstKTI GATC 8 cut(s) 42, 208, 647, 873, 877, 922, 1105, 1276
BstMAI GTCTC 2 cut(s) 477, 535
BstMBI GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
BstMWI GCNNNNNNNGC 3 cut(s) 839, 998, 1319
BstNI CCWGG 1 cut(s) 1095
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 1 cut(s) 1093
BstSFI CTRYAG 3 cut(s) 637, 996, 1149
BstSLI GKGCMC 2 cut(s) 189, 1046
BstV1I GCAGC 6 cut(s) 118, 283, 820, 935, 979, 1267
BstV2I GAAGAC 1 cut(s) 1156
BstX2I RGATCY 3 cut(s) 39, 644, 1273
BstXI CCANNNNNNTGG 2 cut(s) 541, 748
BstYI RGATCY 3 cut(s) 39, 644, 1273
Bsu15I ATCGAT 1 cut(s) 873
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 4 cut(s) 393, 664, 842, 911
BsuTUI ATCGAT 1 cut(s) 873
BtgI CCRYGG 1 cut(s) 961
BtsCI GGATG 3 cut(s) 262, 988, 1245
BtsI GCAGTG 2 cut(s) 534, 1146
BtsIMutI CAGTG 4 cut(s) 333, 432, 534, 1146
Cac8I GCNNGC 5 cut(s) 58, 395, 563, 946, 1209
CaiI CAGNNNCTG 2 cut(s) 866, 1157
CfoI GCGC 2 cut(s) 131, 1322
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 873
CsiI ACCWGGT 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 937, 958, 974, 1091
CviAII CATG 6 cut(s) 83, 182, 848, 929, 940, 945
CviQI GTAC 4 cut(s) 937, 958, 974, 1091
DdeI CTNAG 4 cut(s) 525, 867, 1158, 1258
DpnI GATC 8 cut(s) 41, 207, 646, 872, 876, 921, 1104, 1275
DpnII GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
EaeI YGGCCR 1 cut(s) 909
Eam1104I CTCTTC 1 cut(s) 1326
EarI CTCTTC 1 cut(s) 1326
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 1110
Eco147I AGGCCT 2 cut(s) 393, 842
Eco24I GRGCYC 2 cut(s) 69, 897
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 266, 312
EcoICRI GAGCTC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 1253
EcoRII CCWGG 1 cut(s) 1093
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 1110
EcoT38I GRGCYC 2 cut(s) 69, 897
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 6 cut(s) 86, 185, 851, 932, 943, 948
FaqI GGGAC 1 cut(s) 256
FatI CATG 6 cut(s) 82, 181, 847, 928, 939, 944
FauI CCCGC 1 cut(s) 1200
Fnu4HI GCNGC 6 cut(s) 132, 297, 834, 949, 993, 1281
FokI GGATG 3 cut(s) 249, 995, 1252
FriOI GRGCYC 2 cut(s) 69, 897
Fsp4HI GCNGC 6 cut(s) 132, 297, 834, 949, 993, 1281
GlaI GCGC 2 cut(s) 130, 1321
GluI GCNGC 6 cut(s) 132, 297, 834, 949, 993, 1281
GsaI CCCAGC 2 cut(s) 64, 114
HaeII RGCGCY 2 cut(s) 132, 1323
HaeIII GGCC 4 cut(s) 393, 664, 842, 911
HhaI GCGC 2 cut(s) 131, 1322
Hin1II CATG 6 cut(s) 86, 185, 851, 932, 943, 948
Hin6I GCGC 2 cut(s) 129, 1320
HinP1I GCGC 2 cut(s) 129, 1320
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 2 cut(s) 140, 682
HphI GGTGA 4 cut(s) 977, 1112, 1244, 1262
Hpy166II GTNNAC 3 cut(s) 346, 751, 1036
Hpy188I TCNGA 2 cut(s) 29, 1261
Hpy8I GTNNAC 3 cut(s) 346, 751, 1036
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 8 cut(s) 163, 328, 528, 973, 1229, 1241, 1310, 1331
HpyCH4III ACNGT 8 cut(s) 220, 328, 737, 858, 881, 962, 1024, 1087
HpyCH4IV ACGT 2 cut(s) 597, 969
HpyCH4V TGCA 7 cut(s) 134, 387, 397, 836, 1117, 1151, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 839, 998, 1319
HpyF3I CTNAG 4 cut(s) 525, 867, 1158, 1258
HpySE526I ACGT 2 cut(s) 597, 969
Hsp92II CATG 6 cut(s) 86, 185, 851, 932, 943, 948
HspAI GCGC 2 cut(s) 129, 1320
Kzo9I GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 6 cut(s) 118, 283, 820, 935, 979, 1267
LweI GCATC 2 cut(s) 96, 283
MabI ACCWGGT 1 cut(s) 1093
MaeII ACGT 2 cut(s) 597, 969
MaeIII GTNAC 1 cut(s) 965
MalI GATC 8 cut(s) 41, 207, 646, 872, 876, 921, 1104, 1275
MboI GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
MboII GAAGA 5 cut(s) 148, 302, 699, 1156, 1343
MflI RGATCY 3 cut(s) 39, 644, 1273
MhlI GDGCHC 5 cut(s) 69, 189, 567, 897, 1046
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 6 cut(s) 304, 371, 382, 1173, 1184, 1253
MluNI TGGCCA 1 cut(s) 911
Mox20I TGGCCA 1 cut(s) 911
MscI TGGCCA 1 cut(s) 911
MseI TTAA 6 cut(s) 147, 414, 689, 744, 1008, 1068
MslI CAYNNNNRTG 3 cut(s) 539, 746, 1224
Msp20I TGGCCA 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 1095
Mva1269I GAATGC 2 cut(s) 58, 87
MvaI CCWGG 1 cut(s) 1095
MwoI GCNNNNNNNGC 3 cut(s) 839, 998, 1319
NdeII GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
NlaIII CATG 6 cut(s) 86, 185, 851, 932, 943, 948
NlaIV GGNNCC 5 cut(s) 41, 451, 739, 780, 1043
NmuCI GTSAC 1 cut(s) 965
NspI RCATGY 1 cut(s) 948
OliI CACNNNNGTG 1 cut(s) 539
PaeI GCATGC 1 cut(s) 948
PceI AGGCCT 2 cut(s) 393, 842
PctI GAATGC 2 cut(s) 58, 87
PfeI GAWTC 2 cut(s) 140, 682
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 6 cut(s) 133, 298, 835, 950, 994, 1282
PshBI ATTAAT 1 cut(s) 744
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 1093
PspFI CCCAGC 2 cut(s) 60, 110
PspGI CCWGG 1 cut(s) 1093
PspN4I GGNNCC 5 cut(s) 41, 451, 739, 780, 1043
PspPI GGNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 1153
PstNI CAGNNNCTG 2 cut(s) 866, 1157
PsuI RGATCY 3 cut(s) 39, 644, 1273
RsaI GTAC 4 cut(s) 938, 959, 975, 1092
RsaNI GTAC 4 cut(s) 937, 958, 974, 1091
RseI CAYNNNNRTG 3 cut(s) 539, 746, 1224
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 147, 414, 689, 744, 1008, 1068
SatI GCNGC 6 cut(s) 132, 297, 834, 949, 993, 1281
Sau3AI GATC 8 cut(s) 39, 205, 644, 870, 874, 919, 1102, 1273
Sau96I GGNCC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 1095
SduI GDGCHC 5 cut(s) 69, 189, 567, 897, 1046
SexAI ACCWGGT 1 cut(s) 1093
SfaNI GCATC 2 cut(s) 96, 283
SfcI CTRYAG 3 cut(s) 637, 996, 1149
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 3 cut(s) 539, 746, 1224
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
SphI GCATGC 1 cut(s) 948
Sse9I AATT 6 cut(s) 304, 371, 382, 1173, 1184, 1253
SseBI AGGCCT 2 cut(s) 393, 842
SsiI CCGC 3 cut(s) 1018, 1062, 1207
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 2 cut(s) 393, 842
StyD4I CCNGG 1 cut(s) 1093
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 8 cut(s) 220, 328, 737, 858, 881, 962, 1024, 1087
TaiI ACGT 2 cut(s) 600, 972
TaqI TCGA 2 cut(s) 462, 873
TasI AATT 6 cut(s) 304, 371, 382, 1173, 1184, 1253
TatI WGTACW 1 cut(s) 936
TfiI GAWTC 2 cut(s) 140, 682
Tru1I TTAA 6 cut(s) 147, 414, 689, 744, 1008, 1068
Tru9I TTAA 6 cut(s) 147, 414, 689, 744, 1008, 1068
TscAI CASTG 4 cut(s) 333, 439, 541, 1153
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 6 cut(s) 131, 296, 833, 948, 992, 1280
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 5 cut(s) 243, 251, 633, 711, 1344
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 4 cut(s) 333, 439, 541, 1153
Van91I CCANNNNNTGG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 346
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 2 cut(s) 1184, 1253
XceI RCATGY 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.