pycom14g02510

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0019303
Physical Location & Seq
Forward (+)
1965353 .. 1965820
468 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGGATGGAAATCGTAAATTAATGGCAGCTGGAAGTTATCAACGTCAAGGAGTTAGAGCTTTTGCTAAGAGTATGACAGACAGAATTAGTGATCTTCCCGATGGAGTTGCTCATCACATTCTTTCCTTCCTTGCTATCGCAGACCTCACTCGTTTCGGCTGTGTGTCCAAAAGATGCAAACAACTTTATCTGTTAACCCCTTCATTGGATATTGATGTATTTTCTGATGCACATATGGTTTCCTGCTTTAAGCAGTTGTTGAGTTCTTTGGATAGGTTTTTATGGATGCATCGTGGCGTTAATAAAATACAACGATTTCGTATCTACTGGGATGATTTTTGCCTTGACGATTTCCTTGAACCTGATTTTCTTGAAGATGTGACTTTTCGATTGATGACATGGATCCACAATGCTGTAAGCTGTAACGTTGAAGTCCTTGAGGTTGATATCCGGTTGATATCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

156

Amino Acids

17.91

Weight (kDa)

6.18

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 62 5.7e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019303)

Species Orthologous Gene IDs
prunus_persica Prupe.7G106300_v2.0.a1
pyrus_communis pycom14g02510
rosa_multiflora Rmu_sc0004386.1_g000022 Rmu_sc0009233.1_g000001 Rmu_sc0010389.1_g000010
rosa_samantha Rh2BG191800 Rh2CG186500 Rh2DG188400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 461
AclI AACGTT 1 cut(s) 426
AclWI GGATC 2 cut(s) 397, 410
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 3 cut(s) 359, 374, 431
AluBI AGCT 3 cut(s) 29, 59, 420
AluI AGCT 3 cut(s) 29, 59, 420
AlwI GGATC 2 cut(s) 397, 410
Aor13HI TCCGGA 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 20
BamHI GGATCC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 404
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 4 cut(s) 164, 217, 276, 298
BmuI ACTGGG 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 458
BsaBI GATNNNNATC 1 cut(s) 9
BsaWI WCCGGW 2 cut(s) 450, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 461
BseGI GGATG 3 cut(s) 10, 291, 337
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 451, 462
BslI CCNNNNNNNGG 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 2 cut(s) 91, 402
BspEI TCCGGA 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 2 cut(s) 397, 410
BsrI ACTGG 1 cut(s) 332
BssMI GATC 2 cut(s) 91, 402
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 10, 291, 337
BstKTI GATC 2 cut(s) 94, 405
BstMBI GATC 2 cut(s) 91, 402
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BtsCI GGATG 3 cut(s) 10, 291, 337
CviAII CATG 1 cut(s) 399
CviJI RGCY 4 cut(s) 29, 59, 159, 420
CviKI_1 RGCY 4 cut(s) 29, 59, 159, 420
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 93, 404
DpnII GATC 2 cut(s) 91, 402
Eco32I GATATC 2 cut(s) 448, 459
EcoRV GATATC 2 cut(s) 448, 459
EcoT22I ATGCAT 1 cut(s) 291
FaeI CATG 1 cut(s) 402
FaiI YATR 5 cut(s) 74, 234, 236, 283, 400
FatI CATG 1 cut(s) 398
FauNDI CATATG 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 3 cut(s) 17, 298, 344
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HapII CCGG 2 cut(s) 451, 462
Hin1II CATG 1 cut(s) 402
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HpaI GTTAAC 1 cut(s) 195
HpaII CCGG 2 cut(s) 451, 462
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 98, 371, 462
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 136, 210
HpyCH4IV ACGT 2 cut(s) 43, 426
HpyCH4V TGCA 3 cut(s) 177, 230, 289
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 43, 426
Hsp92II CATG 1 cut(s) 402
Kpn2I TCCGGA 1 cut(s) 461
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 91, 402
LpnPI CCDG 5 cut(s) 15, 256, 313, 375, 464
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 4 cut(s) 164, 217, 276, 298
MaeII ACGT 2 cut(s) 43, 426
MaeIII GTNAC 2 cut(s) 379, 422
MalI GATC 2 cut(s) 93, 404
MboI GATC 2 cut(s) 91, 402
MboII GAAGA 2 cut(s) 86, 386
MflI RGATCY 1 cut(s) 402
MluCI AATT 2 cut(s) 17, 84
MnlI CCTC 2 cut(s) 155, 433
Mph1103I ATGCAT 1 cut(s) 291
MroI TCCGGA 1 cut(s) 461
MseI TTAA 4 cut(s) 20, 194, 249, 300
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 451, 462
NdeI CATATG 1 cut(s) 234
NdeII GATC 2 cut(s) 91, 402
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 291
PkrI GCNGC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 404
PsuI RGATCY 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 29
SaqAI TTAA 4 cut(s) 20, 194, 249, 300
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 91, 402
SetI ASST 9 cut(s) 31, 46, 61, 147, 278, 364, 422, 429, 444
SfaNI GCATC 4 cut(s) 164, 217, 276, 298
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 17, 84
TaiI ACGT 2 cut(s) 46, 429
TaqI TCGA 1 cut(s) 388
TasI AATT 2 cut(s) 17, 84
Tru1I TTAA 4 cut(s) 20, 194, 249, 300
Tru9I TTAA 4 cut(s) 20, 194, 249, 300
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 192
VspI ATTAAT 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.