Rh2CG186500

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
17347506 .. 17348048
543 bp
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UTR
Exon/CDS
Intron
Rh2CG186500.1

Sequence Viewer

Length: 543 bp
ATGGGTAGTGTTAGTTGTGAAGGTGGAGGAGGTTGTGGTGAGAGTGAGAGTGAGAGTATGATAGACAGACTAGAACTGAAAGTTGTCCATCGCATTCTTTCCTTACTTACCATAACTGAGCTCACCATTTTCGGATGTGTGTCCAAAAGATGTAGAGAACTTTATCTGTCAACTCCCACATTGAATTTTGAGGAATTTTCTGTATCGAATACGAATTCATGCTTTAGTCGGCTTAGGTTGATCAATTCCTTGGATAGGTTCTTTTTCAATTACGGGTCTAATCAGATAGTGGGCATTCGTTTTTGTTGGGGAAATCACTATCCAGATGAGGACAGTGATGAAGAACCATGCTTCTGTGTTAATGAGCATTTTCGATTGATGACGTGGATCAACAATGTAGTGAGGGGTAATGTTGAAGTGCTTCATCTGGAGATCTCTTCTTATGATGAAAATGATAGGAAAGAGTTTGTGCTTCCGCCTTGCATTTTTGCTTGTGGATCGCTGAGGTCCTTAGTGGTTGAAATGTTTTTTTACCGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.74

Weight (kDa)

4.93

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019303)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 476
AclWI GGATC 2 cut(s) 395, 505
AcsI RAATTY 3 cut(s) 184, 194, 214
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 4 cut(s) 184, 268, 416, 521
AjiI CACGTC 1 cut(s) 384
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 2 cut(s) 395, 505
ApoI RAATTY 3 cut(s) 184, 194, 214
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 2 cut(s) 50, 115
AvaII GGWCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 503
BccI CCATC 1 cut(s) 96
BclI TGATCA 1 cut(s) 240
BfaI CTAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 2 cut(s) 233, 503
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 108, 494
BseRI GAGGAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 255
BsmI GAATGC 2 cut(s) 93, 294
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 240, 387, 432, 497
BspACI CCGC 1 cut(s) 476
BspCNI CTCAG 2 cut(s) 109, 495
BspPI GGATC 2 cut(s) 395, 505
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 4 cut(s) 240, 387, 432, 497
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 335, 536
Bst6I CTCTTC 1 cut(s) 442
BstDEI CTNAG 4 cut(s) 117, 233, 503, 511
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 4 cut(s) 243, 390, 435, 500
BstMBI GATC 4 cut(s) 240, 387, 432, 497
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 74
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 507
CviAII CATG 2 cut(s) 219, 348
CviJI RGCY 2 cut(s) 121, 232
CviKI_1 RGCY 2 cut(s) 121, 232
DdeI CTNAG 4 cut(s) 117, 233, 503, 511
DpnI GATC 4 cut(s) 242, 389, 434, 499
DpnII GATC 4 cut(s) 240, 387, 432, 497
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 222, 351
FaiI YATR 5 cut(s) 59, 113, 220, 349, 444
FatI CATG 2 cut(s) 218, 347
FbaI TGATCA 1 cut(s) 240
FokI GGATG 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 123
FspBI CTAG 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 449
Hin1II CATG 2 cut(s) 222, 351
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HphI GGTGA 2 cut(s) 50, 115
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 134, 285
Hpy188III TCNNGA 2 cut(s) 323, 428
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 2 cut(s) 335, 536
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 1 cut(s) 483
HpyF3I CTNAG 4 cut(s) 117, 233, 503, 511
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 222, 351
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 4 cut(s) 240, 387, 432, 497
LpnPI CCDG 2 cut(s) 336, 413
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 383
MalI GATC 4 cut(s) 242, 389, 434, 499
MboI GATC 4 cut(s) 240, 387, 432, 497
MboII GAAGA 2 cut(s) 353, 429
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 5 cut(s) 184, 194, 214, 244, 268
MnlI CCTC 6 cut(s) 20, 23, 184, 322, 396, 498
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 360, 541
Mva1269I GAATGC 2 cut(s) 93, 294
NdeII GATC 4 cut(s) 240, 387, 432, 497
NlaIII CATG 2 cut(s) 222, 351
PctI GAATGC 2 cut(s) 93, 294
PdmI GAANNNNTTC 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 507
PspPI GGNCC 1 cut(s) 507
PspPPI RGGWCCY 1 cut(s) 507
PsuI RGATCY 1 cut(s) 432
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 360, 541
Sau3AI GATC 4 cut(s) 240, 387, 432, 497
Sau96I GGNCC 1 cut(s) 507
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 25, 34, 123, 239, 260, 386, 509
SinI GGWCC 1 cut(s) 507
Sse9I AATT 5 cut(s) 184, 194, 214, 244, 268
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 123
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 335, 536
TaiI ACGT 1 cut(s) 386
TaqI TCGA 2 cut(s) 206, 373
TasI AATT 5 cut(s) 184, 194, 214, 244, 268
Tru1I TTAA 2 cut(s) 360, 541
Tru9I TTAA 2 cut(s) 360, 541
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 207, 354, 413, 462
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 253
XapI RAATTY 3 cut(s) 184, 194, 214
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.