pycom14g02580

Has 11 Blast hits to 11 proteins in 5 species Archae - 0

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0017168
Physical Location & Seq
Reverse (-)
1992472 .. 1993607
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGCGGATAGGCCTAGAACGAGTCACGGGTGGATTTGTAGGATGGTTTACGACAAAACAAGAAAGTAGAAAGAAAGAACACACAGAAAGAAAGAAAGAAATTGCAAAGAAAATGGCGGATTCGACATTTCCTGCAGCTAATGTGGATGCAGAATTGAATCCAGGAACTAACAAGAACTTTGAGGAAGACAGTGGATCGTCTCTAGTAACTACCTCCAAGGAAATCAAGTGCAGTCTTGCTAATAATGTTGCGCTGTTTATTTTCAAGGAAAAATTAGAGGCTGAAGAGAGAAAGCAGCAGAAGGAGAAGGAGAAGGAGAGGGAGAAGGAGAAGAAAGATGCAGCGCAGACGCTCAAGAAAAGCATTATTATCTCAGCGGTGGTCGTGGCTGTAGTTGGCGCGATATTTGCCCTAACCAAGAAATTGAGAGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

9.54

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52620
malus_domestica MD12G1027000.v1.1 MD12G1088600.v1.1 MD14G1027100.v1.1
prunus_persica Prupe.7G104600_v2.0.a1
pyrus_communis pycom14g02580
rosa_chinensis RchiOBHm_Chr3g0474201
rosa_multiflora Rmu_sc0015051.1_g000003
rosa_samantha Rh3AG189900 Rh3BG219100 Rh3CG214500 Rh3DG214600
rosa_wichuraiana Rw3G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 401
AciI CCGC 3 cut(s) 4, 116, 377
AclWI GGATC 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 157, 265
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 3 cut(s) 134, 295, 341
AspLEI GCGC 3 cut(s) 253, 346, 401
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 146, 307, 353
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 14, 203
BfmI CTRYAG 2 cut(s) 132, 390
BisI GCNGC 3 cut(s) 135, 296, 342
BlsI GCNGC 3 cut(s) 136, 297, 343
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 136, 328
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 47, 151
BseMII CTCAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 146, 307, 353
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 204
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 3 cut(s) 4, 116, 377
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 386
BspFNI CGCG 1 cut(s) 401
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 47, 151
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 3 cut(s) 253, 346, 401
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 2 cut(s) 132, 390
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 3 cut(s) 146, 307, 353
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 47, 151
BtsIMutI CAGTG 1 cut(s) 196
CfoI GCGC 3 cut(s) 253, 346, 401
CseI GACGC 1 cut(s) 358
CviJI RGCY 4 cut(s) 12, 137, 281, 389
CviKI_1 RGCY 4 cut(s) 12, 137, 281, 389
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 135, 296, 342
FokI GGATG 2 cut(s) 54, 158
Fsp4HI GCNGC 3 cut(s) 135, 296, 342
FspBI CTAG 2 cut(s) 14, 203
GlaI GCGC 3 cut(s) 252, 345, 400
GluI GCNGC 3 cut(s) 135, 296, 342
HaeIII GGCC 1 cut(s) 12
HgaI GACGC 1 cut(s) 358
HhaI GCGC 3 cut(s) 253, 346, 401
Hin6I GCGC 3 cut(s) 251, 344, 399
HinP1I GCGC 3 cut(s) 251, 344, 399
HinfI GANTC 3 cut(s) 21, 119, 157
Hpy166II GTNNAC 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 4 cut(s) 295, 301, 307, 319
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 5 cut(s) 104, 134, 149, 231, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 373
HspAI GCGC 3 cut(s) 251, 344, 399
Kzo9I GATC 1 cut(s) 194
LpnPI CCDG 3 cut(s) 144, 147, 174
Lsp1109I GCAGC 3 cut(s) 146, 307, 353
LweI GCATC 2 cut(s) 136, 328
MaeI CTAG 2 cut(s) 14, 203
MaeIII GTNAC 2 cut(s) 22, 205
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 3 cut(s) 197, 296, 343
MluCI AATT 4 cut(s) 99, 152, 272, 422
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 4 cut(s) 175, 223, 271, 312
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 12
PfeI GAWTC 2 cut(s) 119, 157
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 3 cut(s) 136, 297, 343
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PstI CTGCAG 1 cut(s) 136
SatI GCNGC 3 cut(s) 135, 296, 342
Sau3AI GATC 1 cut(s) 194
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 162
SetI ASST 2 cut(s) 139, 215
SfaNI GCATC 2 cut(s) 136, 328
SfcI CTRYAG 2 cut(s) 132, 390
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 99, 152, 272, 422
SseBI AGGCCT 1 cut(s) 12
SsiI CCGC 3 cut(s) 4, 116, 377
SspMI CTAG 2 cut(s) 14, 203
StuI AGGCCT 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 122
TasI AATT 4 cut(s) 99, 152, 272, 422
TfiI GAWTC 2 cut(s) 119, 157
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 134, 295, 341
Tsp45I GTSAC 1 cut(s) 22
TspRI CASTG 1 cut(s) 196
XspI CTAG 2 cut(s) 14, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.