Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0017181

Physical Location & Seq

Genomic Coordinates Forward (+)

18773681 .. 18774537

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAACACGGCGGAGCAGCTCTGCGTGTCTCTTCTGAGCAAGTGCAAGACCCTCAAAACCGTGAAGCAAGTTCACGCCTTTGCATCCAAGACGGGCCTCGACGCCCATCCCTTTGTCTTCGGCAAGCTCCTCCTCCACTGCGCCGTCACAATCTCCGACGCTCTCCGCTACGCTTGCCGCCTTTTCCTTCATTTTCGAAACGCAGATGCCTTCATGTACAATACTCTCATTCGCGGGCTGGCTGAATCGGATAGTCCGCATGATGCGCTTGTTGTGTTTGCTGAAATGCGTCGGAAATTGACTGACCCGATTGATAGCTTCTCTTTCGCGTTCGTACTCAAGGCGGCGGCGAATTGCGGGGATTTGAGAGATGGGATGGGGCTTCATTGTCAAGCTTTGGTTTGTGGACTTGATACCCATCTTTTTGTTGGGACAACTCTGATTAGTATGTATGCTGAATGTGGACGTGTTAAGTTTGCTCGACAAGTGTTTGAGGAAATGCGCGAACCAAATGTGGTCGCGTGGAATGCGATTCTTACCGCGTGTTTTCGGTGTGGGGATGCGAAGGGTGCGGAGGCAATGTTTGGCTGGATGCCTTTGAGGAATTTGACGTCTTGGAACATTTTGCTTTCAGGGTATGTGAAAACGGATGAGCTTGAGCTTGCCAAGAAGGCATTTTTGAGGATGCCGATGAAAGATGATGTGTCTTGGAGTACTATGATTGTTGGGTTTGCTCAGAGTGAGCTTGACCGGGGTACTCTCTGCGTGTGCACAAGCTGGCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

263

Amino Acids

29.24

Weight (kDa)

8.24

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 203	8.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74630 AT1G74630
fragaria_vesca	FvH4_5g14980
malus_domestica	MD14G1199700.v1.1
prunus_persica	Prupe.5G193000_v2.0.a1
pyrus_communis	pycom14g16550
rosa_chinensis	RchiOBHm_Chr7g0181341
rosa_laevigata	RLG00000005197
rosa_rugosa	Rorug06G0440400
rosa_samantha	Rh7AG042300 Rh7BG041200 Rh7CG043600
rosa_wichuraiana	Rw7G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	614
AccII	CGCG	5 cut(s)	234, 329, 504, 521, 542
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	2 cut(s)	102, 611
AfaI	GTAC	4 cut(s)	218, 336, 715, 757
AflIII	ACRYGT	1 cut(s)	466
AjiI	CACGTC	1 cut(s)	467
AluBI	AGCT	8 cut(s)	19, 127, 318, 395, 655, 661, 745, 777
AluI	AGCT	8 cut(s)	19, 127, 318, 395, 655, 661, 745, 777
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	769
AoxI	GGCC	1 cut(s)	94
ApaLI	GTGCAC	1 cut(s)	769
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	604
AspLEI	GCGC	4 cut(s)	143, 268, 504, 783
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	752
AsuII	TTCGAA	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	4 cut(s)	114, 365, 370, 426
BceAI	ACGGC	2 cut(s)	24, 128
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	17, 178, 345, 348
BlsI	GCNGC	4 cut(s)	18, 179, 346, 349
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	6 cut(s)	92, 196, 253, 550, 582, 675
BpiI	GAAGAC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	323, 677
BpuMI	CCSGG	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	2 cut(s)	102, 611
BsaJI	CCNNGG	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	7 cut(s)	83, 106, 381, 565, 597, 655, 690
BseJI	GATNNNNATC	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	26, 749
BseRI	GAGGAG	2 cut(s)	119, 122
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	5 cut(s)	234, 329, 504, 521, 542
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp1407I	TGTACA	1 cut(s)	216
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	27, 748
BspFNI	CGCG	5 cut(s)	234, 329, 504, 521, 542
BspT104I	TTCGAA	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	751
BssNI	GRCGYC	2 cut(s)	102, 611
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	2 cut(s)	102, 611
BstAUI	TGTACA	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	6 cut(s)	125, 175, 236, 240, 663, 779
BstDEI	CTNAG	2 cut(s)	35, 735
BstF5I	GGATG	7 cut(s)	83, 106, 381, 565, 597, 655, 690
BstFNI	CGCG	5 cut(s)	234, 329, 504, 521, 542
BstHHI	GCGC	4 cut(s)	143, 268, 504, 783
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 265, 527, 569, 671
BstSCI	CCNGG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	773
BstUI	CGCG	5 cut(s)	234, 329, 504, 521, 542
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	467
BtsCI	GGATG	7 cut(s)	83, 106, 381, 565, 597, 655, 690
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	125, 175, 236, 240, 663, 779
CfoI	GCGC	4 cut(s)	143, 268, 504, 783
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	3 cut(s)	110, 167, 278
Csp6I	GTAC	4 cut(s)	217, 335, 714, 756
CviAII	CATG	2 cut(s)	214, 260
CviQI	GTAC	4 cut(s)	217, 335, 714, 756
DdeI	CTNAG	2 cut(s)	35, 735
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	26
FaeI	CATG	2 cut(s)	217, 263
FaiI	YATR	6 cut(s)	215, 261, 449, 453, 639, 719
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	213, 259
FauI	CCCGC	2 cut(s)	227, 350
Fnu4HI	GCNGC	4 cut(s)	17, 178, 345, 348
FokI	GGATG	7 cut(s)	70, 93, 388, 572, 604, 662, 697
Fsp4HI	GCNGC	4 cut(s)	17, 178, 345, 348
GlaI	GCGC	4 cut(s)	142, 267, 503, 782
GluI	GCNGC	4 cut(s)	17, 178, 345, 348
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	751
HgaI	GACGC	3 cut(s)	110, 167, 278
HhaI	GCGC	4 cut(s)	143, 268, 504, 783
Hin1I	GRCGYC	2 cut(s)	102, 611
Hin1II	CATG	2 cut(s)	217, 263
Hin6I	GCGC	4 cut(s)	141, 266, 502, 781
HinP1I	GCGC	4 cut(s)	141, 266, 502, 781
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	2 cut(s)	245, 532
HpaII	CCGG	1 cut(s)	751
Hpy166II	GTNNAC	4 cut(s)	73, 407, 464, 771
Hpy188I	TCNGA	6 cut(s)	36, 157, 250, 294, 441, 738
Hpy8I	GTNNAC	4 cut(s)	73, 407, 464, 771
Hpy99I	CGWCG	3 cut(s)	104, 161, 294
HpyAV	CCTTC	4 cut(s)	197, 220, 559, 664
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	466, 611
HpyCH4V	TGCA	3 cut(s)	45, 83, 771
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 265, 527, 569, 671
HpyF3I	CTNAG	2 cut(s)	35, 735
HpySE526I	ACGT	2 cut(s)	466, 611
Hsp92I	GRCGYC	2 cut(s)	102, 611
Hsp92II	CATG	2 cut(s)	217, 263
HspAI	GCGC	4 cut(s)	141, 266, 502, 781
LmnI	GCTCC	2 cut(s)	13, 132
LpnPI	CCDG	5 cut(s)	224, 574, 618, 763, 764
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	6 cut(s)	92, 196, 253, 550, 582, 675
MaeII	ACGT	2 cut(s)	466, 611
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	23, 109
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	3 cut(s)	296, 352, 604
MmeI	TCCRAC	2 cut(s)	180, 272
MnlI	CCTC	8 cut(s)	62, 107, 140, 143, 487, 568, 594, 675
MseI	TTAA	1 cut(s)	471
MspI	CCGG	1 cut(s)	751
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	532
MvnI	CGCG	5 cut(s)	234, 329, 504, 521, 542
MwoI	GCNNNNNNNGC	5 cut(s)	174, 265, 527, 569, 671
NciI	CCSGG	1 cut(s)	752
NlaIII	CATG	2 cut(s)	217, 263
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	245, 532
PkrI	GCNGC	4 cut(s)	18, 179, 346, 349
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	4 cut(s)	218, 336, 715, 757
RsaNI	GTAC	4 cut(s)	217, 335, 714, 756
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	17, 178, 345, 348
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	6 cut(s)	92, 196, 253, 550, 582, 675
SfuI	TTCGAA	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	338, 656
SmoI	CTYRAG	2 cut(s)	338, 656
Sse9I	AATT	3 cut(s)	296, 352, 604
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	469, 614
TaqI	TCGA	3 cut(s)	99, 196, 481
TasI	AATT	3 cut(s)	296, 352, 604
TatI	WGTACW	2 cut(s)	216, 713
TauI	GCSGC	3 cut(s)	180, 347, 350
TfiI	GAWTC	2 cut(s)	245, 532
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	5 cut(s)	17, 179, 202, 374, 707
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
ZraI	GACGTC	1 cut(s)	612
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.