pycom14g17360

Uncharacterised protein family (UPF0139)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015214
Physical Location & Seq
Reverse (-)
19329756 .. 19330710
955 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGTCATCGACGGTGAACGACCCGCGCCAGCCCTCGGCGGCGAAGCGCTACGTGCCGTCCGCGGTGGCGCCGCAAGATCTTCCAGTGGATTATTCCGGTCTGATCGCCGTCGTCTTCGGCCTCGCCGGCGTCATGTTCCGCTACAAGTTGTGCTCTTGGGTTGCGATCATATTCTGCGCTCAATCGCTGGTGAACATGAAGAACATCGAGAACGACCTCAAACAGATCTCCATGGCCATGATGTTTGCTATTATGGGATTGGTAACCAACTACTTCGGACCTGCTCGACCGGGGACACAAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0139

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

9.34

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASTER PF03669 6 - 98 1.9e-38 PAT complex subunit Asterix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07960
fragaria_vesca FvH4_5g14060 FvH4_5g14160
malus_domestica MD06G1200600.v1.1 MD14G1210100.v1.1
pyrus_communis pycom14g17360
rosa_chinensis RchiOBHm_Chr7g0182761
rosa_laevigata RLG00000005102
rosa_multiflora Rmu_sc0000014.1_g000031
rosa_roxburghii Rroxscaffold_3G00271010
rosa_rugosa Rorug06G0450000
rosa_samantha Rh7AG053800 Rh7BG053300 Rh7CG054900 Rh7DG053100
rosa_wichuraiana Rw7G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 2 cut(s) 25, 62
AciI CCGC 6 cut(s) 23, 38, 60, 62, 71, 139
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 2 cut(s) 68, 129
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 118, 234
AspLEI GCGC 4 cut(s) 27, 48, 70, 179
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 25, 202
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 40, 92
BcnI CCSGG 1 cut(s) 291
BfoI RGCGCY 2 cut(s) 49, 71
BfuAI ACCTGC 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 126
BglII AGATCT 2 cut(s) 76, 225
BisI GCNGC 2 cut(s) 39, 71
BlsI GCNGC 2 cut(s) 40, 72
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 2 cut(s) 68, 129
BsaJI CCNNGG 4 cut(s) 33, 60, 231, 290
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 83
BseDI CCNNGG 4 cut(s) 33, 60, 231, 290
BseLI CCNNNNNNNGG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 25, 62
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 120, 236
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 3 cut(s) 96, 126, 290
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 120, 236
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 4 cut(s) 76, 102, 165, 225
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 6 cut(s) 23, 38, 60, 62, 71, 139
BspANI GGCC 2 cut(s) 120, 236
BspFNI CGCG 2 cut(s) 25, 62
BspLI GGNNCC 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 33, 60, 231, 290
BssMI GATC 4 cut(s) 76, 102, 165, 225
BssNI GRCGYC 2 cut(s) 68, 129
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 13
BstACI GRCGYC 2 cut(s) 68, 129
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 29, 127
BstDSI CCRYGG 2 cut(s) 60, 231
BstEII GGTNACC 1 cut(s) 262
BstFNI CGCG 2 cut(s) 25, 62
BstH2I RGCGCY 2 cut(s) 49, 71
BstHHI GCGC 4 cut(s) 27, 48, 70, 179
BstKTI GATC 4 cut(s) 79, 105, 168, 228
BstMBI GATC 4 cut(s) 76, 102, 165, 225
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 52, 126
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 2 cut(s) 25, 62
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 2 cut(s) 76, 225
BstYI RGATCY 2 cut(s) 76, 225
BsuRI GGCC 2 cut(s) 120, 236
BtgI CCRYGG 2 cut(s) 60, 231
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 29, 127
CfoI GCGC 4 cut(s) 27, 48, 70, 179
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 278
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 1 cut(s) 118
CviAII CATG 4 cut(s) 133, 196, 232, 238
CviJI RGCY 3 cut(s) 31, 120, 236
CviKI_1 RGCY 3 cut(s) 31, 120, 236
DinI GGCGCC 1 cut(s) 69
DpnI GATC 4 cut(s) 78, 104, 167, 227
DpnII GATC 4 cut(s) 76, 102, 165, 225
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 47
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 4 cut(s) 136, 199, 235, 241
FaiI YATR 6 cut(s) 134, 170, 197, 233, 239, 254
FatI CATG 4 cut(s) 132, 195, 231, 237
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 39, 71
Fsp4HI GCNGC 2 cut(s) 39, 71
GlaI GCGC 4 cut(s) 26, 47, 69, 178
GluI GCNGC 2 cut(s) 39, 71
HaeII RGCGCY 2 cut(s) 49, 71
HaeIII GGCC 2 cut(s) 120, 236
HapII CCGG 3 cut(s) 96, 126, 290
HgaI GACGC 1 cut(s) 118
HhaI GCGC 4 cut(s) 27, 48, 70, 179
Hin1I GRCGYC 2 cut(s) 68, 129
Hin1II CATG 4 cut(s) 136, 199, 235, 241
Hin6I GCGC 4 cut(s) 25, 46, 68, 177
HinP1I GCGC 4 cut(s) 25, 46, 68, 177
HpaII CCGG 3 cut(s) 96, 126, 290
HphI GGTGA 2 cut(s) 25, 202
Hpy166II GTNNAC 2 cut(s) 16, 193
Hpy188I TCNGA 2 cut(s) 102, 278
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 16, 193
Hpy99I CGWCG 2 cut(s) 13, 113
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 126
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 2 cut(s) 68, 129
Hsp92II CATG 4 cut(s) 136, 199, 235, 241
HspAI GCGC 4 cut(s) 25, 46, 68, 177
KasI GGCGCC 1 cut(s) 67
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 4 cut(s) 76, 102, 165, 225
LpnPI CCDG 7 cut(s) 41, 96, 109, 139, 173, 294, 303
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 78, 104, 167, 227
MboI GATC 4 cut(s) 76, 102, 165, 225
MboII GAAGA 3 cut(s) 71, 106, 211
MflI RGATCY 2 cut(s) 76, 225
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 68
MnlI CCTC 3 cut(s) 43, 131, 227
Mox20I TGGCCA 1 cut(s) 236
MreI CGCCGGCG 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 96, 126, 290
MspR9I CCNGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 25, 62
MwoI GCNNNNNNNGC 2 cut(s) 52, 126
NaeI GCCGGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 231
NdeII GATC 4 cut(s) 76, 102, 165, 225
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 136, 199, 235, 241
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 40, 72
PluTI GGCGCC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 2 cut(s) 76, 225
RseI CAYNNNNRTG 1 cut(s) 236
SacII CCGCGG 1 cut(s) 63
SatI GCNGC 2 cut(s) 39, 71
Sau3AI GATC 4 cut(s) 76, 102, 165, 225
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 155
SetI ASST 3 cut(s) 54, 219, 283
SfoI GGCGCC 1 cut(s) 69
Sfr303I CCGCGG 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 125
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 236
SsiI CCGC 6 cut(s) 23, 38, 60, 62, 71, 139
SspDI GGCGCC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 8, 207, 286
TauI GCSGC 2 cut(s) 41, 73
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.