Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012005

Physical Location & Seq

Genomic Coordinates Forward (+)

519639 .. 520668

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAATCTGGGCAGAAGGACATATTCTACATTACTGGAGCCAGCAAGGAACAATTGGAAAAATCACCATTCCTTGAGAGGCTTAAGAAGAAAAACTTTGAGGTTATTTTCTTCACAGATCCAGTTGATGAATATCTGATGCAGTACTTGATGGACTATGAAGACAAGAAATTCCAGAACGTGTCAAAGGAGGGTTTGAAACTCGGCAAAGACTCAAAGGACAAGGAACTCAAGGAATCGTACAAGGAGCTCACTAAATGGTGGAAGAGCGCTCTTGCCAGCGATAATGTGGATGATGTTAAGCTGTCCAACCGTTTGGCTGACACCCCTTGTGTGGTTGTGACATCAAAGTATGGTTGGAGTGCAAACATGGAGAGGATCATGCAGTCTCAGACGTTATCAGATGCTAACAAGCAAGGATACATGCGTGGCAAGAGGATACTTGAGATTAACCCAAGGCATCCAATCATCAAGGAGCTCCGCGAGAGAGTAGTAAAGAACGCTGAGGATGAGAGCGTGAAAAAGACAGCACAGCTTATTTACCAGACTGCACTCATGGAGAGTGGCTTCAATCTTCCAGACCCCAAGGACTTTGCTTCCCGCATCTATAGCTCGGTGAAGTCTAGCCTAAACATCAACCCTGATGTTGCAGTTGAGGAGGAAGATGATGCTGAAGAAGTTGAGACAGAAACTGCTGCAACCGAAGCTGCAGCTACCCCTGAGGCTGAGGCTGAGGCTGAGGCTGATGCTGATTCACTTAAGGACGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

258

Amino Acids

29.25

Weight (kDa)

4.82

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	1 - 235	6.1e-90	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24190 AT4G24190
fragaria_vesca	FvH4_2g38300 FvH4_2g38300 FvH4_2g38300
malus_domestica	MD08G1011200.v1.1
prunus_persica	Prupe.1G363900_v2.0.a1 Prupe.1G363900_v2.0.a1
pyrus_communis	pycom08g00990 pycom15g00960 pycom15g00970
rosa_chinensis	RchiOBHm_Chr6g0303071
rosa_laevigata	RLG00000011111
rosa_multiflora	Rmu_ssc0000460.1_g000034
rosa_roxburghii	Rroxscaffold_7G00165040
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG432700 Rh6DG431900
rosa_wichuraiana	Rw6G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	483
AciI	CCGC	2 cut(s)	481, 601
AclWI	GGATC	2 cut(s)	113, 386
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	146, 242
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflII	CTTAAG	2 cut(s)	83, 758
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	199, 571
AluBI	AGCT	7 cut(s)	250, 304, 478, 535, 612, 707, 713
AluI	AGCT	7 cut(s)	250, 304, 478, 535, 612, 707, 713
Alw21I	GWGCWC	2 cut(s)	252, 480
Alw26I	GTCTC	2 cut(s)	393, 677
AlwI	GGATC	2 cut(s)	113, 386
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor51HI	AGCGCT	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	695, 707, 710
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	57, 628
AxyI	CCTNAGG	1 cut(s)	720
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanII	GRGCYC	2 cut(s)	252, 480
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	252, 480
BbvCI	CCTCAGC	4 cut(s)	504, 726, 732, 738
BbvI	GCAGC	3 cut(s)	682, 694, 722
BccI	CCATC	1 cut(s)	145
BciVI	GTATCC	2 cut(s)	413, 432
BcoDI	GTCTC	2 cut(s)	393, 677
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	607, 708
BfoI	RGCGCY	1 cut(s)	273
BfrI	CTTAAG	2 cut(s)	83, 758
BfuI	GTATCC	2 cut(s)	413, 432
BisI	GCNGC	3 cut(s)	696, 708, 711
BlsI	GCNGC	3 cut(s)	697, 709, 712
BmcAI	AGTACT	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	6 cut(s)	129, 394, 469, 612, 658, 736
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	4 cut(s)	504, 726, 732, 738
BpuEI	CTTGAG	3 cut(s)	95, 215, 464
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	455, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	40, 122
Bse21I	CCTNAGG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	455, 585
BseGI	GGATG	3 cut(s)	298, 460, 514
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	6 cut(s)	404, 495, 711, 717, 723, 729
BseNI	ACTGG	2 cut(s)	40, 122
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	3 cut(s)	682, 694, 722
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	252, 480
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	393, 677
Bsp1286I	GDGCHC	2 cut(s)	252, 480
Bsp143I	GATC	2 cut(s)	118, 378
BspACI	CCGC	2 cut(s)	481, 601
BspCNI	CTCAG	6 cut(s)	403, 496, 712, 718, 724, 730
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	2 cut(s)	113, 386
BspQI	GCTCTTC	1 cut(s)	260
BspTI	CTTAAG	2 cut(s)	83, 758
BsrI	ACTGG	2 cut(s)	40, 122
BssECI	CCNNGG	2 cut(s)	455, 585
BssMI	GATC	2 cut(s)	118, 378
BssT1I	CCWWGG	2 cut(s)	455, 585
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	260
BstAFI	CTTAAG	2 cut(s)	83, 758
BstC8I	GCNNGC	2 cut(s)	43, 280
BstDEI	CTNAG	6 cut(s)	390, 504, 720, 726, 732, 738
BstF5I	GGATG	3 cut(s)	298, 460, 514
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	121, 381
BstMAI	GTCTC	2 cut(s)	393, 677
BstMBI	GATC	2 cut(s)	118, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 704
BstNSI	RCATGY	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	607, 708
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	682, 694, 722
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	720
BsuI	GTATCC	2 cut(s)	413, 432
BtsCI	GGATG	3 cut(s)	298, 460, 514
Cac8I	GCNNGC	2 cut(s)	43, 280
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	145, 241
CviAII	CATG	4 cut(s)	370, 382, 424, 556
CviQI	GTAC	2 cut(s)	145, 241
DdeI	CTNAG	6 cut(s)	390, 504, 720, 726, 732, 738
DpnI	GATC	2 cut(s)	120, 380
DpnII	GATC	2 cut(s)	118, 378
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	2 cut(s)	250, 478
Eco130I	CCWWGG	2 cut(s)	455, 585
Eco24I	GRGCYC	2 cut(s)	252, 480
Eco47III	AGCGCT	1 cut(s)	271
Eco53kI	GAGCTC	2 cut(s)	250, 478
Eco57I	CTGAAG	1 cut(s)	693
Eco81I	CCTNAGG	1 cut(s)	720
EcoICRI	GAGCTC	2 cut(s)	250, 478
EcoT14I	CCWWGG	2 cut(s)	455, 585
EcoT38I	GRGCYC	2 cut(s)	252, 480
ErhI	CCWWGG	2 cut(s)	455, 585
FaeI	CATG	4 cut(s)	373, 385, 427, 559
FaiI	YATR	8 cut(s)	23, 159, 354, 371, 383, 425, 557, 609
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	4 cut(s)	369, 381, 423, 555
FauI	CCCGC	1 cut(s)	608
Fnu4HI	GCNGC	3 cut(s)	696, 708, 711
FokI	GGATG	3 cut(s)	305, 447, 521
FriOI	GRGCYC	2 cut(s)	252, 480
Fsp4HI	GCNGC	3 cut(s)	696, 708, 711
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	696, 708, 711
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	273
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	373, 385, 427, 559
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	212, 236, 752
HphI	GGTGA	2 cut(s)	57, 628
Hpy188I	TCNGA	3 cut(s)	138, 393, 403
Hpy188III	TCNNGA	2 cut(s)	175, 578
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	180, 395
HpyCH4V	TGCA	7 cut(s)	142, 365, 385, 551, 650, 698, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 704
HpyF3I	CTNAG	6 cut(s)	390, 504, 720, 726, 732, 738
HpySE526I	ACGT	2 cut(s)	180, 395
Hsp92II	CATG	4 cut(s)	373, 385, 427, 559
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	118, 378
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	4 cut(s)	38, 247, 475, 483
LpnPI	CCDG	9 cut(s)	21, 55, 135, 188, 292, 557, 591, 654, 732
Lsp1109I	GCAGC	3 cut(s)	682, 694, 722
LweI	GCATC	6 cut(s)	129, 394, 469, 612, 658, 736
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	180, 395
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	120, 380
MboI	GATC	2 cut(s)	118, 378
MboII	GAAGA	7 cut(s)	100, 103, 173, 277, 566, 674, 686
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	252, 480
MluCI	AATT	2 cut(s)	53, 170
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	333, 338
MseI	TTAA	4 cut(s)	84, 300, 450, 759
MspCI	CTTAAG	2 cut(s)	83, 758
MunI	CAATTG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	609, 704
NdeII	GATC	2 cut(s)	118, 378
NlaIII	CATG	4 cut(s)	373, 385, 427, 559
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	236, 752
PkrI	GCNGC	3 cut(s)	697, 709, 712
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	2 cut(s)	252, 480
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	146, 242
RsaNI	GTAC	2 cut(s)	145, 241
SacI	GAGCTC	2 cut(s)	252, 480
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	84, 300, 450, 759
SatI	GCNGC	3 cut(s)	696, 708, 711
Sau3AI	GATC	2 cut(s)	118, 378
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	252, 480
SfaNI	GCATC	6 cut(s)	129, 394, 469, 612, 658, 736
SfcI	CTRYAG	2 cut(s)	607, 708
SmlI	CTYRAG	5 cut(s)	74, 83, 230, 443, 758
SmoI	CTYRAG	5 cut(s)	74, 83, 230, 443, 758
Sse9I	AATT	2 cut(s)	53, 170
SsiI	CCGC	2 cut(s)	481, 601
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	2 cut(s)	252, 480
StyI	CCWWGG	2 cut(s)	455, 585
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	2 cut(s)	183, 398
TasI	AATT	2 cut(s)	53, 170
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	236, 752
Tru1I	TTAA	4 cut(s)	84, 300, 450, 759
Tru9I	TTAA	4 cut(s)	84, 300, 450, 759
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	3 cut(s)	695, 707, 710
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	17, 144, 174
Vha464I	CTTAAG	2 cut(s)	83, 758
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.