Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012005

Physical Location & Seq

Genomic Coordinates Reverse (-)

6896551 .. 6900905

Gene Structure 4355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGAGGAAGTGGACGATCCCTTCCGTTCTGCTTCTGCTGTGCCTTCTCTCTCTTCTCCCAGATCAAGGACGGAAATTACAGGCGAATGCAGAGGCAAACTCCGACGAGGTCGTAGATCCACCGAAGGTTGAGGAGAAGATCGGCGCCGTCCCGAATGGGCTATCCACCGATTCTGATGTCGCTAAGAGAGAGGCGGAGTCAATGTCAAAGAGACGCGGCAACGCTCAACAGTTTGAGTTCCAGGCTGAGGTGTCTAGGCTCATGGATATTATTATCCACTCCCTTTATAGTAACAAGGACATTTTCCTCAGGGAGTTGATTTCCAATGCTTCTGATGCGCTGGACAAGATTAGATTCCTTTCCCTCACTGATAAGGAAATTTTGGGTGAAGGTGATAACACTAAGCTTGAAATCCAGATTAAATTAGACAAAGAGAAGAGAATCCTCTCCATACGTGACAGAGGTATAGGTATGACTAAGGAGGACTTGATCAAGAACTTGGGAACTATAGCAAAATCTGGGACTTCAGCGTTCGTTGAGAAGATGCAAACTAGTGGTGATCTTAATCTCATTGGGCAATTTGGAGTTGGGTTTTACTCCGTCTACCTTGTTGCTGATAATGTCGAAGTCATTAGCAAACACAATGATGACAAACAGCATGTTTGGGAGTCGAAGGCTGATGGTTCATTTGTAGTTTCCGAGGATACATATAATGAGCCACTAGGACGTGGTACTGAAATTAGATTGCACCTCAGAGAAGAAGCAGGGGAATATTTGGAAGAAAGCAAGCTAAAAGAGTTGGTGAAGAGATATTCTGAATTTATCAACTTCCCCATCTATATCTGGTCAACCAAAGAGGTTGACGTGGAAGTTCCAGCTGACGAGGAAGAGGAATCATCTGATAGCTCCTCCTCTGAGGAAGAAACTGAAGAGGATGCTGAGAAAACTGAAGATGAAGATGCTGAGAAGAAACCAAAGATAAAGACAGTAAAGGAAACAAATAGTGAATGGGAGCTTCTAAATGACGTTAAAGCAATATGGTTGCGCAATCCAAAGGAGGTAACCGAAGAAGAGTACACCAAATTCTATCAGACCCTTGCCAAGGATTTCAGCGAGGACAAGCCTTTGTCATGGAGCCACTTTACCGCTGAAGGTGATGTAGAATTCAAGGCTGTACTGTTTGTTCCTCCTAAGGCTCCTCATGATCTATATGAGAGCTATTATAATGCCAACAAATCCAATTTGAAGTTGTATGTTCGAAGAGTTTTCATATCAGATGAATTCGATGAGCTTTTGCCAAAGTATCTGAACATTTTGAAGGGTCTTGTTGATTCGGACACCTTGCCACTCAATGTATCACGAGAAATGCTTCAACAACACAGCAGTTTGAAAACAATCAAGAAAAAACTTATCCGGAAGGCCCTTGATATGATCCGTAAACTCGCTGAAGAAGATCCTGATGAGTCCAATGACAAAGAGAAGAAAGATGTTGAGAAGTCCGATGATGATGAGAAGAGAGGCCAATATACAAGGTTCTGGAATGAATTTGGCAAGTCTATTAAACTTGGTATTATTGAAGATGCGGCCAACAGAAACCGTTTGGCAAAACTTTTAAGATTTGAGAGTACCAAGTCAGATGGCAAACTGACTTCACTGGATCAGTACATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAACCAGCAAGGAACAGTTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGAAAGGATACGAGGTTATCTTTTTCACAGATCCAGTTGATGAATATTTGATGCAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGAGGGTTTGAAACTCGGTAAAGACTCAAAAGATAAGGAACTCAAGGAATCATACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGTTGATGATGTGAAGCTGTCCAACCGATTGGCTGACACACCATGCGTGGTTGTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTCTCAGACTTTATCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAGAGGGTACTTGAGATTAATCCAAGGCACCCAATCATCAAGGAGCTCAGGGAGAGAGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTATTTACCAGACTGCACTCATGGAGAGTGGCTTTGCACTTCCTGACCCGAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACGTCAACCCTGATGCCACAGTTGAGGAGGAAGATGATACCGAAGAACCAGCTGAGGCTGAAACTCCTGCAAACGAAGCTACCCCGGAGGCTGAATCTGCTAATGCAGATTCACAGAAGGACGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

812

Amino Acids

92.71

Weight (kDa)

4.93

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	102 - 254	2e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	104 - 219	3e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	257 - 792	6.7e-216	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24190 AT4G24190
fragaria_vesca	FvH4_2g38300 FvH4_2g38300 FvH4_2g38300
malus_domestica	MD08G1011200.v1.1
prunus_persica	Prupe.1G363900_v2.0.a1 Prupe.1G363900_v2.0.a1
pyrus_communis	pycom08g00990 pycom15g00960 pycom15g00970
rosa_chinensis	RchiOBHm_Chr6g0303071
rosa_laevigata	RLG00000011111
rosa_multiflora	Rmu_ssc0000460.1_g000034
rosa_roxburghii	Rroxscaffold_7G00165040
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG432700 Rh6DG431900
rosa_wichuraiana	Rw6G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1224
Acc16I	TGCGCA	1 cut(s)	1046
AccB1I	GGYRCC	2 cut(s)	143, 2133
AccBSI	CCGCTC	1 cut(s)	1753
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	216, 2103
AccIII	TCCGGA	1 cut(s)	1413
AciI	CCGC	7 cut(s)	194, 216, 1146, 1583, 1753, 2103, 2275
AclWI	GGATC	6 cut(s)	10, 110, 1426, 1448, 1665, 1787
AcoI	YGGCCR	1 cut(s)	1584
AcsI	RAATTY	7 cut(s)	378, 818, 1082, 1163, 1280, 1544, 1844
AcuI	CTGAAG	5 cut(s)	510, 948, 969, 1170, 1467
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	6 cut(s)	733, 1076, 1176, 1627, 1664, 2115
AfiI	CCNNNNNNNGG	3 cut(s)	65, 247, 1102
AflII	CTTAAG	1 cut(s)	1757
AhlI	ACTAGT	1 cut(s)	551
AjiI	CACGTC	2 cut(s)	728, 865
AjnI	CCWGG	1 cut(s)	240
Alw21I	GWGCWC	2 cut(s)	1948, 2154
Alw26I	GTCTC	2 cut(s)	205, 2067
AlwI	GGATC	6 cut(s)	10, 110, 1426, 1448, 1665, 1787
Aor13HI	TCCGGA	1 cut(s)	1413
AoxI	GGCC	3 cut(s)	1419, 1519, 1584
ApoI	RAATTY	7 cut(s)	378, 818, 1082, 1163, 1280, 1544, 1844
AseI	ATTAAT	1 cut(s)	2124
Asp700I	GAANNNNTTC	1 cut(s)	1368
AspLEI	GCGC	5 cut(s)	146, 340, 1047, 2039, 2103
AspS9I	GGNCC	1 cut(s)	1420
AsuC2I	CCSGG	1 cut(s)	2390
AsuHPI	GGTGA	5 cut(s)	398, 404, 569, 814, 1166
AsuII	TTCGAA	1 cut(s)	1258
AxyI	CCTNAGG	3 cut(s)	308, 1191, 2178
BanI	GGYRCC	2 cut(s)	143, 2133
BanII	GRGCYC	1 cut(s)	2154
BarI	GAAGNNNNNNTAC	2 cut(s)	1754, 1786
BauI	CACGAG	1 cut(s)	1359
BbsI	GAAGAC	1 cut(s)	1842
Bbv12I	GWGCWC	2 cut(s)	1948, 2154
BbvCI	CCTCAGC	2 cut(s)	246, 2358
BccI	CCATC	5 cut(s)	674, 842, 1631, 1819, 2025
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	242
BciVI	GTATCC	2 cut(s)	697, 1763
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	2390
BcoDI	GTCTC	2 cut(s)	205, 2067
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	4 cut(s)	255, 552, 722, 2298
BfmI	CTRYAG	2 cut(s)	507, 2281
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	1757
BfuI	GTATCC	2 cut(s)	697, 1763
BisI	GCNGC	4 cut(s)	217, 1584, 1754, 2104
BlsI	GCNGC	4 cut(s)	218, 1585, 1755, 2105
Bme1390I	CCNGG	2 cut(s)	242, 2390
BmgBI	CACGTC	2 cut(s)	728, 865
BmgT120I	GGNCC	1 cut(s)	1420
BmiI	GGNNCC	5 cut(s)	145, 1136, 1197, 1714, 2135
BmrFI	CCNGG	2 cut(s)	242, 2390
BmsI	GCATC	8 cut(s)	325, 534, 925, 949, 1570, 1803, 2286, 2308
BpiI	GAAGAC	1 cut(s)	1842
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	3 cut(s)	246, 2153, 2358
Bpu14I	TTCGAA	1 cut(s)	1258
BpuEI	CTTGAG	3 cut(s)	1769, 1889, 2138
BpuMI	CCSGG	1 cut(s)	2390
BsaAI	YACGTR	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	699, 1101, 2129, 2388
BsaWI	WCCGGW	1 cut(s)	1413
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 247, 1102
Bse1I	ACTGG	4 cut(s)	1659, 1714, 1796, 1953
Bse21I	CCTNAGG	3 cut(s)	308, 1191, 2178
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	1413
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	699, 1101, 2129, 2388
BseGI	GGATG	4 cut(s)	940, 1680, 2036, 2188
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	65, 247, 1102
BseNI	ACTGG	4 cut(s)	1659, 1714, 1796, 1953
BseRI	GAGGAG	5 cut(s)	146, 898, 901, 1188, 2345
BsgI	GTGCAG	1 cut(s)	2208
Bsh1236I	CGCG	2 cut(s)	216, 2103
BshFI	GGCC	3 cut(s)	1421, 1521, 1586
BshNI	GGYRCC	2 cut(s)	143, 2133
BsiHKAI	GWGCWC	2 cut(s)	1948, 2154
BsiSI	CCGG	2 cut(s)	1414, 2390
BslFI	GGGAC	2 cut(s)	134, 535
BslI	CCNNNNNNNGG	3 cut(s)	65, 247, 1102
BsmAI	GTCTC	2 cut(s)	205, 2067
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	134, 535
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	1421, 1521, 1586
Bsp119I	TTCGAA	1 cut(s)	1258
Bsp1286I	GDGCHC	2 cut(s)	1948, 2154
Bsp13I	TCCGGA	1 cut(s)	1413
BspACI	CCGC	7 cut(s)	194, 216, 1146, 1583, 1753, 2103, 2275
BspANI	GGCC	3 cut(s)	1421, 1521, 1586
BspEI	TCCGGA	1 cut(s)	1413
BspFNI	CGCG	2 cut(s)	216, 2103
BspHI	TCATGA	1 cut(s)	1201
BspLI	GGNNCC	5 cut(s)	145, 1136, 1197, 1714, 2135
BspPI	GGATC	6 cut(s)	10, 110, 1426, 1448, 1665, 1787
BspT104I	TTCGAA	1 cut(s)	1258
BspT107I	GGYRCC	2 cut(s)	143, 2133
BspTI	CTTAAG	1 cut(s)	1757
BsrBI	CCGCTC	1 cut(s)	1753
BsrI	ACTGG	4 cut(s)	1659, 1714, 1796, 1953
BssECI	CCNNGG	4 cut(s)	699, 1101, 2129, 2388
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	1359
BssT1I	CCWWGG	2 cut(s)	1101, 2129
Bst2BI	CACGAG	1 cut(s)	1359
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	7 cut(s)	231, 988, 1179, 1598, 1728, 2285, 2326
Bst6I	CTCTTC	8 cut(s)	57, 431, 800, 882, 924, 1065, 1255, 1508
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	1757
BstBAI	YACGTR	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	1258
BstC8I	GCNNGC	2 cut(s)	788, 2091
BstEII	GGTNACC	1 cut(s)	1060
BstENI	CCTNNNNNAGG	1 cut(s)	1100
BstF5I	GGATG	4 cut(s)	940, 1680, 2036, 2188
BstFNI	CGCG	2 cut(s)	216, 2103
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	5 cut(s)	146, 340, 1047, 2039, 2103
BstMAI	GTCTC	2 cut(s)	205, 2067
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 2090, 2381, 2402
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	662
BstPI	GGTNACC	1 cut(s)	1060
BstSCI	CCNGG	2 cut(s)	240, 2388
BstSFI	CTRYAG	2 cut(s)	507, 2281
BstUI	CGCG	2 cut(s)	216, 2103
BstV2I	GAAGAC	1 cut(s)	1842
BstX2I	RGATCY	3 cut(s)	115, 1453, 1792
BstXI	CCANNNNNNTGG	1 cut(s)	1990
BstYI	RGATCY	3 cut(s)	115, 1453, 1792
Bsu36I	CCTNAGG	3 cut(s)	308, 1191, 2178
BsuI	GTATCC	2 cut(s)	697, 1763
BsuRI	GGCC	3 cut(s)	1421, 1521, 1586
BtrI	CACGTC	2 cut(s)	728, 865
BtsCI	GGATG	4 cut(s)	940, 1680, 2036, 2188
BtsIMutI	CAGTG	4 cut(s)	366, 1652, 1960, 2295
Cac8I	GCNNGC	2 cut(s)	788, 2091
CciI	TCATGA	1 cut(s)	1201
CfoI	GCGC	5 cut(s)	146, 340, 1047, 2039, 2103
Cfr13I	GGNCC	1 cut(s)	1420
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	6 cut(s)	732, 1075, 1175, 1626, 1663, 2114
CviAII	CATG	8 cut(s)	262, 659, 1131, 1202, 2004, 2044, 2056, 2230
CviQI	GTAC	6 cut(s)	732, 1075, 1175, 1626, 1663, 2114
DinI	GGCGCC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	1584
Eam1104I	CTCTTC	8 cut(s)	57, 431, 800, 882, 924, 1065, 1255, 1508
EarI	CTCTTC	8 cut(s)	57, 431, 800, 882, 924, 1065, 1255, 1508
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	2152
Eco130I	CCWWGG	2 cut(s)	1101, 2129
Eco24I	GRGCYC	1 cut(s)	2154
Eco53kI	GAGCTC	1 cut(s)	2152
Eco57I	CTGAAG	5 cut(s)	510, 948, 969, 1170, 1467
Eco81I	CCTNAGG	3 cut(s)	308, 1191, 2178
Eco91I	GGTNACC	1 cut(s)	1060
EcoICRI	GAGCTC	1 cut(s)	2152
EcoNI	CCTNNNNNAGG	1 cut(s)	1100
EcoO109I	RGGNCCY	1 cut(s)	1420
EcoO65I	GGTNACC	1 cut(s)	1060
EcoRI	GAATTC	2 cut(s)	1163, 1280
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	1101, 2129
EcoT38I	GRGCYC	1 cut(s)	2154
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	1101, 2129
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	8 cut(s)	265, 662, 1134, 1205, 2007, 2047, 2059, 2233
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	134, 535
FatI	CATG	8 cut(s)	261, 658, 1130, 1201, 2003, 2043, 2055, 2229
FauI	CCCGC	1 cut(s)	2282
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	217, 1584, 1754, 2104
FokI	GGATG	4 cut(s)	947, 1687, 2043, 2195
FriOI	GRGCYC	1 cut(s)	2154
Fsp4HI	GCNGC	4 cut(s)	217, 1584, 1754, 2104
FspBI	CTAG	4 cut(s)	255, 552, 722, 2298
FspI	TGCGCA	1 cut(s)	1046
GlaI	GCGC	5 cut(s)	145, 339, 1046, 2038, 2102
GluI	GCNGC	4 cut(s)	217, 1584, 1754, 2104
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	1421, 1521, 1586
HapII	CCGG	2 cut(s)	1414, 2390
HgaI	GACGC	1 cut(s)	222
HhaI	GCGC	5 cut(s)	146, 340, 1047, 2039, 2103
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	8 cut(s)	265, 662, 1134, 1205, 2007, 2047, 2059, 2233
Hin6I	GCGC	5 cut(s)	144, 338, 1045, 2037, 2101
HinP1I	GCGC	5 cut(s)	144, 338, 1045, 2037, 2101
HincII	GTYRAC	3 cut(s)	849, 862, 2311
HindII	GTYRAC	3 cut(s)	849, 862, 2311
HindIII	AAGCTT	1 cut(s)	404
HpaII	CCGG	2 cut(s)	1414, 2390
HphI	GGTGA	5 cut(s)	398, 404, 569, 814, 1166
Hpy166II	GTNNAC	7 cut(s)	12, 604, 849, 862, 1077, 1439, 2311
Hpy8I	GTNNAC	7 cut(s)	12, 604, 849, 862, 1077, 1439, 2311
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4III	ACNGT	7 cut(s)	231, 988, 1179, 1598, 1728, 2285, 2326
HpyCH4IV	ACGT	5 cut(s)	454, 727, 864, 1026, 2307
HpyCH4V	TGCA	9 cut(s)	89, 547, 748, 1816, 2059, 2225, 2246, 2375, 2411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 2090, 2381, 2402
HpySE526I	ACGT	5 cut(s)	454, 727, 864, 1026, 2307
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	8 cut(s)	265, 662, 1134, 1205, 2007, 2047, 2059, 2233
HspAI	GCGC	5 cut(s)	144, 338, 1045, 2037, 2101
KasI	GGCGCC	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	1413
Ksp22I	TGATCA	1 cut(s)	489
LmnI	GCTCC	6 cut(s)	911, 1012, 1134, 1201, 2034, 2149
LweI	GCATC	8 cut(s)	325, 534, 925, 949, 1570, 1803, 2286, 2308
MaeI	CTAG	4 cut(s)	255, 552, 722, 2298
MaeII	ACGT	5 cut(s)	454, 727, 864, 1026, 2307
MaeIII	GTNAC	5 cut(s)	290, 455, 1060, 1955, 2014
MbiI	CCGCTC	1 cut(s)	1753
MflI	RGATCY	3 cut(s)	115, 1453, 1792
MhlI	GDGCHC	2 cut(s)	1948, 2154
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	4 cut(s)	206, 677, 1472, 1880
MmeI	TCCRAC	3 cut(s)	126, 1710, 2007
MroI	TCCGGA	1 cut(s)	1413
MroXI	GAANNNNTTC	1 cut(s)	1368
MseI	TTAA	7 cut(s)	420, 564, 1029, 1560, 1613, 1758, 2124
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	3 cut(s)	878, 1148, 2357
MspCI	CTTAAG	1 cut(s)	1757
MspI	CCGG	2 cut(s)	1414, 2390
MspR9I	CCNGG	2 cut(s)	242, 2390
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	216, 2103
MwoI	GCNNNNNNNGC	4 cut(s)	335, 2090, 2381, 2402
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	2390
NlaIII	CATG	8 cut(s)	265, 662, 1134, 1205, 2007, 2047, 2059, 2233
NlaIV	GGNNCC	5 cut(s)	145, 1136, 1197, 1714, 2135
NmuCI	GTSAC	2 cut(s)	455, 1955
NsbI	TGCGCA	1 cut(s)	1046
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	1258
PagI	TCATGA	1 cut(s)	1201
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	1368
PfeI	GAWTC	9 cut(s)	170, 354, 441, 893, 1331, 1910, 2078, 2399, 2414
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	218, 1585, 1755, 2105
PleI	GAGTC	4 cut(s)	205, 676, 1471, 1880
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	4 cut(s)	205, 676, 1471, 1880
Ppu21I	YACGTR	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	2124
PsiI	TTATAA	1 cut(s)	1224
Psp124BI	GAGCTC	1 cut(s)	2154
Psp6I	CCWGG	1 cut(s)	240
PspEI	GGTNACC	1 cut(s)	1060
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	5 cut(s)	145, 1136, 1197, 1714, 2135
PspPI	GGNCC	1 cut(s)	1420
PsrI	GAACNNNNNNTAC	2 cut(s)	1167, 1199
PsuI	RGATCY	3 cut(s)	115, 1453, 1792
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	2 cut(s)	878, 2357
RsaI	GTAC	6 cut(s)	733, 1076, 1176, 1627, 1664, 2115
RsaNI	GTAC	6 cut(s)	732, 1075, 1175, 1626, 1663, 2114
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	2154
SaqAI	TTAA	7 cut(s)	420, 564, 1029, 1560, 1613, 1758, 2124
SatI	GCNGC	4 cut(s)	217, 1584, 1754, 2104
Sau96I	GGNCC	1 cut(s)	1420
SchI	GAGTC	4 cut(s)	206, 677, 1472, 1880
ScrFI	CCNGG	2 cut(s)	242, 2390
SduI	GDGCHC	2 cut(s)	1948, 2154
SfaNI	GCATC	8 cut(s)	325, 534, 925, 949, 1570, 1803, 2286, 2308
SfcI	CTRYAG	2 cut(s)	507, 2281
SfoI	GGCGCC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	1258
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	4 cut(s)	1748, 1757, 1904, 2117
SmoI	CTYRAG	4 cut(s)	1748, 1757, 1904, 2117
SpeI	ACTAGT	1 cut(s)	551
SsiI	CCGC	7 cut(s)	194, 216, 1146, 1583, 1753, 2103, 2275
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	773, 1808
SspMI	CTAG	4 cut(s)	255, 552, 722, 2298
SstI	GAGCTC	1 cut(s)	2154
StyD4I	CCNGG	2 cut(s)	240, 2388
StyI	CCWWGG	2 cut(s)	1101, 2129
TaaI	ACNGT	7 cut(s)	231, 988, 1179, 1598, 1728, 2285, 2326
TaiI	ACGT	5 cut(s)	457, 730, 867, 1029, 2310
TaqI	TCGA	4 cut(s)	624, 671, 1258, 1284
TatI	WGTACW	3 cut(s)	1074, 1174, 1662
TauI	GCSGC	4 cut(s)	219, 1586, 1756, 2106
TfiI	GAWTC	9 cut(s)	170, 354, 441, 893, 1331, 1910, 2078, 2399, 2414
Tru1I	TTAA	7 cut(s)	420, 564, 1029, 1560, 1613, 1758, 2124
Tru9I	TTAA	7 cut(s)	420, 564, 1029, 1560, 1613, 1758, 2124
TscAI	CASTG	4 cut(s)	373, 1659, 1960, 2295
TseFI	GTSAC	2 cut(s)	455, 1955
Tsp45I	GTSAC	2 cut(s)	455, 1955
TspDTI	ATGAA	8 cut(s)	675, 969, 1258, 1293, 1557, 1691, 1818, 1848
TspGWI	ACGGA	4 cut(s)	13, 85, 589, 1424
TspRI	CASTG	4 cut(s)	373, 1659, 1960, 2295
Tth111I	GACNNNGTC	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	1757
VspI	ATTAAT	1 cut(s)	2124
XagI	CCTNNNNNAGG	1 cut(s)	1100
XapI	RAATTY	7 cut(s)	378, 818, 1082, 1163, 1280, 1544, 1844
XceI	RCATGY	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	1368
XspI	CTAG	4 cut(s)	255, 552, 722, 2298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.