pycom15g01550

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017517
Physical Location & Seq
Forward (+)
887026 .. 887763
738 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGCATATGGCTGCAGTAGTGATGAGAAAGTTATGGGTCGTCTTGTTTATTGTGACGGCGACTGTTGGTTCGGAAGCTGCCGGTAGTAAGTTAGAAAATGGCATGGCTAATAGTACTCATCACGAGCAAGGCAATAGTTCTTTTCTAGCTGTTGCTGAAATTCCTTCCGCAGGAATTAATGGAGAAGTAAGGAACGTGACTACTTCCTACACCACTGAAGTTGATATCACCAACAAAAAGAAGCAACCTAATTGGATGTCCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGCGGTGGAGGTGGTAATGGGGGTCGAGGTGGAGGTGGAGGTGGAGGTGGAGGCGGAGGCGGAGGAGGCTATGCATGGGGTTGGGGTGGTGGTGGCGGCGGAGGAGGTGGCGGAGGAGGAGGTAGAGGTGGAAAAGGAGGAGGTGGTGGGTGGGGATGGGGCGGAGGAGGAGGAGGGGCAGGGTGGTGGAAATGGGGTTGTGGTGGTGGAAAAGGAAAAGGCCGAGGAGGAAGAGGCGGCAGAAACAGTAACCATGTCTACAGCGGCCGGAAGAGGAGGTTCGACGAGGAAGAGTACGTGATGGGTGAGTATGCACAATGCATGCGGAAGGGGCAATGCAAAGGCATGAGATTGGATTGCCCTCTTCACTGCGGAGGGCCTTGCTTCTACGACTGCCAACGCATGTGCAAGGCTCACTGCCGACGACGTCGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

24.41

Weight (kDa)

9.86

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75550 AT1G75550
fragaria_vesca FvH4_2g39010
malus_domestica MD15G1017600.v1.1
prunus_persica Prupe.1G370900_v2.0.a1
pyrus_communis pycom15g01550
rosa_chinensis RchiOBHm_Chr6g0302111
rosa_laevigata RLG00000011194
rosa_multiflora Rmu_ssc0000160.1_g000010
rosa_roxburghii Rroxscaffold_7G00166070
rosa_rugosa Rorug06G0312400
rosa_wichuraiana Rw6G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 3 cut(s) 115, 596, 733
AfiI CCNNNNNNNGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 77, 149
AluI AGCT 2 cut(s) 77, 149
AoxI GGCC 3 cut(s) 520, 565, 677
ApeKI GCWGC 2 cut(s) 11, 77
ApoI RAATTY 1 cut(s) 159
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AseI ATTAAT 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 220, 617
BauI CACGAG 1 cut(s) 122
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 450, 595
BceAI ACGGC 1 cut(s) 72
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 12, 559
BisI GCNGC 6 cut(s) 12, 78, 301, 397, 538, 565
BlsI GCNGC 6 cut(s) 13, 79, 302, 398, 539, 566
BmcAI AGTACT 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 677
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 2 cut(s) 261, 461
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 641
BseX3I CGGCCG 1 cut(s) 565
BseXI GCAGC 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 3 cut(s) 522, 567, 679
BsiEI CGRYCG 1 cut(s) 568
BsiSI CCGG 2 cut(s) 81, 568
BslI CCNNNNNNNGG 1 cut(s) 170
BsnI GGCC 3 cut(s) 522, 567, 679
BspANI GGCC 3 cut(s) 522, 567, 679
BspMAI CTGCAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 641
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 727
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 64, 548
Bst6I CTCTTC 4 cut(s) 526, 566, 585, 669
BstACI GRCGYC 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 623
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 261, 461
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 2 cut(s) 366, 631
BstNSI RCATGY 2 cut(s) 625, 706
BstSFI CTRYAG 2 cut(s) 12, 559
BstV1I GCAGC 1 cut(s) 64
BstZI CGGCCG 1 cut(s) 565
BsuRI GGCC 3 cut(s) 522, 567, 679
BtsCI GGATG 2 cut(s) 261, 461
BtsI GCAGTG 2 cut(s) 667, 715
BtsIMutI CAGTG 3 cut(s) 213, 667, 715
Cac8I GCNNGC 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 114, 595, 732
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 6 cut(s) 103, 375, 554, 622, 646, 703
CviJI RGCY 9 cut(s) 11, 77, 107, 149, 369, 522, 567, 679, 713
CviKI_1 RGCY 9 cut(s) 11, 77, 107, 149, 369, 522, 567, 679, 713
CviQI GTAC 3 cut(s) 114, 595, 732
EaeI YGGCCR 1 cut(s) 565
EagI CGGCCG 1 cut(s) 565
Eam1104I CTCTTC 4 cut(s) 526, 566, 585, 669
EarI CTCTTC 4 cut(s) 526, 566, 585, 669
EciI GGCGGA 5 cut(s) 369, 375, 414, 426, 477
EclXI CGGCCG 1 cut(s) 565
Eco32I GATATC 1 cut(s) 226
Eco52I CGGCCG 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 677
EcoRV GATATC 1 cut(s) 226
EcoT22I ATGCAT 3 cut(s) 6, 376, 623
FaeI CATG 6 cut(s) 106, 378, 557, 625, 649, 706
FatI CATG 6 cut(s) 102, 374, 553, 621, 645, 702
FauNDI CATATG 1 cut(s) 6
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 6 cut(s) 12, 78, 301, 397, 538, 565
FokI GGATG 2 cut(s) 268, 468
Fsp4HI GCNGC 6 cut(s) 12, 78, 301, 397, 538, 565
FspBI CTAG 1 cut(s) 146
GluI GCNGC 6 cut(s) 12, 78, 301, 397, 538, 565
HaeIII GGCC 3 cut(s) 522, 567, 679
HapII CCGG 2 cut(s) 81, 568
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 6 cut(s) 106, 378, 557, 625, 649, 706
HpaII CCGG 2 cut(s) 81, 568
HphI GGTGA 2 cut(s) 220, 617
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 122, 261
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 4 cut(s) 587, 726, 729, 732
HpyAV CCTTC 2 cut(s) 174, 622
HpyCH4III ACNGT 2 cut(s) 64, 548
HpyCH4IV ACGT 3 cut(s) 195, 597, 727
HpyCH4V TGCA 7 cut(s) 4, 14, 374, 614, 621, 639, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 631
HpySE526I ACGT 3 cut(s) 195, 597, 727
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 6 cut(s) 106, 378, 557, 625, 649, 706
LpnPI CCDG 5 cut(s) 94, 156, 274, 465, 581
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 146
MaeII ACGT 3 cut(s) 195, 597, 727
MaeIII GTNAC 3 cut(s) 52, 196, 548
MboII GAAGA 4 cut(s) 543, 583, 602, 656
MluCI AATT 3 cut(s) 159, 174, 250
Mph1103I ATGCAT 3 cut(s) 6, 376, 623
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 2 cut(s) 81, 568
MwoI GCNNNNNNNGC 2 cut(s) 366, 631
NdeI CATATG 1 cut(s) 6
NlaIII CATG 6 cut(s) 106, 378, 557, 625, 649, 706
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 2 cut(s) 52, 196
NsiI ATGCAT 3 cut(s) 6, 376, 623
NspI RCATGY 2 cut(s) 625, 706
PaeI GCATGC 1 cut(s) 625
PflFI GACNNNGTC 1 cut(s) 726
PkrI GCNGC 6 cut(s) 13, 79, 302, 398, 539, 566
Ppu21I YACGTR 1 cut(s) 598
PshBI ATTAAT 1 cut(s) 177
PspPI GGNCC 1 cut(s) 677
PstI CTGCAG 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 726
RsaI GTAC 3 cut(s) 115, 596, 733
RsaNI GTAC 3 cut(s) 114, 595, 732
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 6 cut(s) 12, 78, 301, 397, 538, 565
Sau96I GGNCC 1 cut(s) 677
ScaI AGTACT 1 cut(s) 115
SfcI CTRYAG 2 cut(s) 12, 559
SphI GCATGC 1 cut(s) 625
Sse9I AATT 3 cut(s) 159, 174, 250
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 64, 548
TaiI ACGT 3 cut(s) 198, 600, 730
TaqI TCGA 2 cut(s) 325, 582
TasI AATT 3 cut(s) 159, 174, 250
TatI WGTACW 1 cut(s) 113
TauI GCSGC 4 cut(s) 303, 399, 540, 567
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 3 cut(s) 220, 674, 722
TseFI GTSAC 2 cut(s) 52, 196
TseI GCWGC 2 cut(s) 11, 77
Tsp45I GTSAC 2 cut(s) 52, 196
TspRI CASTG 3 cut(s) 220, 674, 722
Tth111I GACNNNGTC 1 cut(s) 726
VspI ATTAAT 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 1 cut(s) 159
XceI RCATGY 2 cut(s) 625, 706
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 1 cut(s) 146
ZraI GACGTC 1 cut(s) 728
ZrmI AGTACT 1 cut(s) 115
Zsp2I ATGCAT 3 cut(s) 6, 376, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.