pycom15g06160

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013372
Physical Location & Seq
Reverse (-)
3769257 .. 3770596
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
ATGGACTCCGATCAAGCTAAGCTTTTCGTCGGGGGAATCTCTTGGGAAACGAACGAAGAGACGCTGAGAGCTCACTTCAGGAGCTACGGCACCGTTTTGGGCTCCGTCATTGCCAGGGACCGCAGCAACCACAACCCTAGAGGGTTTGGCTTCGTCTGGTTCTCGGACATTTCTTCAGCGGACAAAGCCCTTGAAGACCCGCACGTCATTCTGGGCAGAACGGTAGAGGTTAAAAAAGCAATTCCCAGACCCCGAAACCAACATCAAAGTAGAATGTTGAGTAGGAGTGTGGAGAATGAAACTCAGTTTAGAACAAAGAAAATCTTCGTTGGCGGTTTATCAGCAGGTTTGACAGAGGACGGATTTAAAAATTATTTTGAGAAGTTTGGGAGTGTATCAGATGTGGTTGTGATGCATGACTACAAAACCCGCAGGCCCCGGGGCTTTGGTTTTATCACCTTTGATTCGGAGGATTCTGTTGAGAATGTGATGCAGGAAAGCTTTCATGAGTTGAATGGTAGGTCTGTGGAGGTCAAGAGAGCTGTGCCAAAGGAGGAGAATGGCAATAACGAAAGCGGTTATACTGATTATGCGCCCAGATTCCCCAGAATCTACCCTCCTTATACTTGTACCCCTGCTCCTACATATGGGGTACTTCCTTTTCCAACACCTTATAATGGTCTTGGGCCATTTGCGTATGGAACCACTGTTTATGGTGGTGGTTGGTACCCTTCAGTCGCAGCTCGTGGGACACCTTATGGCATTGCTCCAATTGCACCTCAGCCATGGGTGTTTCCTTATGGAAACGCCTTATATCCTGGCTACATGAGTGGTGGAGGCTTGGCGGCAGGCAGCTACAATGGGATCCTTGGGCCTGCTGTTTTCACCGGTGGCAAACCAAATCAGGTTGTGTTCGGCAGTGGACTTGCACCAGTTAATGTGAAGCCATCTCAGGTTGAAGTGAAGAAGCTGGACGTCGATTCTCGATCCAACAGTACTGCTGTCAATAAAAAAAACTCAAAAAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

344

Amino Acids

37.63

Weight (kDa)

9.25

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 66 2.6e-14 RNA recognition motif
RRM_7 PF16367 106 - 173 7e-07 RNA recognition motif
RRM_1 PF00076 108 - 175 2e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58470 AT1G58470
fragaria_vesca FvH4_2g32660
malus_domestica MD15G1064900.v1.1
prunus_persica Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1
pyrus_communis pycom15g06160
rosa_chinensis RchiOBHm_Chr6g0310071
rosa_laevigata RLG00000010514
rosa_multiflora Rmu_sc0000294.1_g000020
rosa_roxburghii Rroxscaffold_7G00158910
rosa_rugosa Rorug06G0377200
rosa_samantha Rh6AG490900 Rh6BG500400 Rh6CG505300 Rh6DG491300
rosa_wichuraiana Rw6G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AasI GACNNNNNNGTC 1 cut(s) 203
AatII GACGTC 1 cut(s) 978
Acc36I ACCTGC 1 cut(s) 335
Acc65I GGTACC 1 cut(s) 726
AccB1I GGYRCC 2 cut(s) 89, 726
AciI CCGC 7 cut(s) 121, 179, 200, 333, 430, 576, 845
AclWI GGATC 3 cut(s) 859, 872, 981
AcuI CTGAAG 3 cut(s) 61, 159, 717
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 4 cut(s) 631, 654, 728, 997
AfiI CCNNNNNNNGG 2 cut(s) 647, 677
AgeI ACCGGT 1 cut(s) 887
AgsI TTSAA 3 cut(s) 194, 514, 959
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 113, 817
AluBI AGCT 9 cut(s) 17, 22, 71, 84, 501, 542, 743, 855, 970
AluI AGCT 9 cut(s) 17, 22, 71, 84, 501, 542, 743, 855, 970
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 859, 872, 981
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 3 cut(s) 434, 686, 872
ApeKI GCWGC 3 cut(s) 123, 740, 852
AsiGI ACCGGT 1 cut(s) 887
Asp700I GAANNNNTTC 2 cut(s) 323, 501
Asp718I GGTACC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 4 cut(s) 118, 435, 686, 872
AsuC2I CCSGG 2 cut(s) 439, 440
AsuHPI GGTGA 2 cut(s) 448, 877
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 864
BanI GGYRCC 2 cut(s) 89, 726
BanII GRGCYC 2 cut(s) 73, 104
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 135, 752, 864
BccI CCATC 1 cut(s) 955
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 115, 819
BcnI CCSGG 2 cut(s) 439, 440
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 4 cut(s) 124, 741, 846, 853
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 4 cut(s) 125, 742, 847, 854
BmcAI AGTACT 1 cut(s) 997
Bme1390I CCNGG 4 cut(s) 115, 439, 440, 819
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 118, 435, 686, 872
BmiI GGNNCC 7 cut(s) 91, 103, 119, 437, 703, 728, 866
BmrFI CCNGG 4 cut(s) 115, 439, 440, 819
BmsI GCATC 2 cut(s) 402, 480
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 780
Bpu1102I GCTNAGC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 439, 440
BsaHI GRCGYC 1 cut(s) 975
BsaJI CCNNGG 6 cut(s) 114, 437, 438, 439, 785, 868
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 677
Bse118I RCCGGY 1 cut(s) 887
Bse1I ACTGG 1 cut(s) 932
Bse3DI GCAATG 2 cut(s) 108, 762
BseBI CCWGG 2 cut(s) 115, 819
BseDI CCNNGG 6 cut(s) 114, 437, 438, 439, 785, 868
BseLI CCNNNNNNNGG 2 cut(s) 647, 677
BseMI GCAATG 2 cut(s) 108, 762
BseMII CTCAG 4 cut(s) 56, 317, 794, 965
BseNI ACTGG 1 cut(s) 932
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 135, 752, 864
BshFI GGCC 3 cut(s) 436, 688, 874
BshNI GGYRCC 2 cut(s) 89, 726
BshTI ACCGGT 1 cut(s) 887
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 2 cut(s) 439, 888
BslFI GGGAC 2 cut(s) 131, 763
BslI CCNNNNNNNGG 2 cut(s) 647, 677
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 131, 763
BsnI GGCC 3 cut(s) 436, 688, 874
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 73, 104
Bsp143I GATC 3 cut(s) 10, 864, 986
Bsp1720I GCTNAGC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 785
BspACI CCGC 7 cut(s) 121, 179, 200, 333, 430, 576, 845
BspANI GGCC 3 cut(s) 436, 688, 874
BspCNI CTCAG 4 cut(s) 57, 316, 793, 964
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 7 cut(s) 91, 103, 119, 437, 703, 728, 866
BspMI ACCTGC 1 cut(s) 335
BspPI GGATC 3 cut(s) 859, 872, 981
BspT107I GGYRCC 2 cut(s) 89, 726
BsrDI GCAATG 2 cut(s) 108, 762
BsrFI RCCGGY 1 cut(s) 887
BsrI ACTGG 1 cut(s) 932
BssAI RCCGGY 1 cut(s) 887
BssECI CCNNGG 6 cut(s) 114, 437, 438, 439, 785, 868
BssMI GATC 3 cut(s) 10, 864, 986
BssNI GRCGYC 1 cut(s) 975
BssSI CACGAG 1 cut(s) 744
BssT1I CCWWGG 2 cut(s) 785, 868
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 2 cut(s) 115, 819
Bst4CI ACNGT 4 cut(s) 94, 223, 709, 995
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 975
BstC8I GCNNGC 3 cut(s) 434, 850, 876
BstDEI CTNAG 5 cut(s) 18, 65, 303, 780, 951
BstDSI CCRYGG 1 cut(s) 785
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 3 cut(s) 13, 867, 989
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 10, 864, 986
BstMWI GCNNNNNNNGC 2 cut(s) 185, 773
BstNI CCWGG 2 cut(s) 115, 819
BstSCI CCNGG 4 cut(s) 113, 437, 438, 817
BstV1I GCAGC 3 cut(s) 135, 752, 864
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
BsuRI GGCC 3 cut(s) 436, 688, 874
BtgI CCRYGG 1 cut(s) 785
BtrI CACGTC 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 2 cut(s) 705, 925
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 3 cut(s) 434, 850, 876
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 887
Cfr13I GGNCC 4 cut(s) 118, 435, 686, 872
Cfr9I CCCGGG 1 cut(s) 438
CseI GACGC 1 cut(s) 70
Csp6I GTAC 4 cut(s) 630, 653, 727, 996
CspAI ACCGGT 1 cut(s) 887
CviAII CATG 4 cut(s) 416, 506, 786, 826
CviQI GTAC 4 cut(s) 630, 653, 727, 996
DdeI CTNAG 5 cut(s) 18, 65, 303, 780, 951
DpnI GATC 3 cut(s) 12, 866, 988
DpnII GATC 3 cut(s) 10, 864, 986
DraI TTTAAA 1 cut(s) 367
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 785, 868
Eco24I GRGCYC 2 cut(s) 73, 104
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 3 cut(s) 61, 159, 717
Eco88I CYCGRG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 113, 817
EcoT14I CCWWGG 2 cut(s) 785, 868
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 2 cut(s) 73, 104
ErhI CCWWGG 2 cut(s) 785, 868
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 4 cut(s) 419, 509, 789, 829
FalI AAGNNNNNCTT 3 cut(s) 38, 308, 340
FaqI GGGAC 2 cut(s) 131, 763
FatI CATG 4 cut(s) 415, 505, 785, 825
FauI CCCGC 2 cut(s) 207, 437
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 4 cut(s) 124, 741, 846, 853
FriOI GRGCYC 2 cut(s) 73, 104
Fsp4HI GCNGC 4 cut(s) 124, 741, 846, 853
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 594
GluI GCNGC 4 cut(s) 124, 741, 846, 853
HaeIII GGCC 3 cut(s) 436, 688, 874
HapII CCGG 2 cut(s) 439, 888
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 595
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 4 cut(s) 419, 509, 789, 829
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HindIII AAGCTT 2 cut(s) 20, 499
HinfI GANTC 7 cut(s) 5, 36, 464, 473, 600, 609, 980
HpaII CCGG 2 cut(s) 439, 888
HphI GGTGA 2 cut(s) 448, 877
Hpy166II GTNNAC 1 cut(s) 923
Hpy188I TCNGA 4 cut(s) 10, 166, 400, 469
Hpy188III TCNNGA 5 cut(s) 79, 506, 535, 984, 1029
Hpy8I GTNNAC 1 cut(s) 923
Hpy99I CGWCG 2 cut(s) 32, 980
HpyAV CCTTC 1 cut(s) 741
HpyCH4III ACNGT 4 cut(s) 94, 223, 709, 995
HpyCH4IV ACGT 2 cut(s) 204, 975
HpyCH4V TGCA 4 cut(s) 415, 493, 776, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 773
HpyF3I CTNAG 5 cut(s) 18, 65, 303, 780, 951
HpySE526I ACGT 2 cut(s) 204, 975
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 4 cut(s) 419, 509, 789, 829
HspAI GCGC 1 cut(s) 593
KpnI GGTACC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 10, 864, 986
LmnI GCTCC 4 cut(s) 81, 107, 643, 772
Lsp1109I GCAGC 3 cut(s) 135, 752, 864
LweI GCATC 2 cut(s) 402, 480
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 204, 975
MalI GATC 3 cut(s) 12, 866, 988
MboI GATC 3 cut(s) 10, 864, 986
MboII GAAGA 5 cut(s) 68, 165, 206, 316, 976
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 864
MhlI GDGCHC 2 cut(s) 73, 104
MluCI AATT 3 cut(s) 240, 370, 771
MmeI TCCRAC 2 cut(s) 689, 1014
MnlI CCTC 9 cut(s) 134, 220, 349, 463, 523, 547, 627, 789, 830
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 2 cut(s) 323, 501
MseI TTAA 3 cut(s) 231, 366, 936
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 439, 888
MspR9I CCNGG 4 cut(s) 115, 439, 440, 819
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 2 cut(s) 115, 819
MwoI GCNNNNNNNGC 2 cut(s) 185, 773
NciI CCSGG 2 cut(s) 439, 440
NcoI CCATGG 1 cut(s) 785
NdeI CATATG 1 cut(s) 646
NdeII GATC 3 cut(s) 10, 864, 986
NlaIII CATG 4 cut(s) 419, 509, 789, 829
NlaIV GGNNCC 7 cut(s) 91, 103, 119, 437, 703, 728, 866
NsiI ATGCAT 1 cut(s) 417
PagI TCATGA 1 cut(s) 505
PdmI GAANNNNTTC 2 cut(s) 323, 501
PfeI GAWTC 6 cut(s) 36, 464, 473, 600, 609, 980
PinAI ACCGGT 1 cut(s) 887
PkrI GCNGC 4 cut(s) 125, 742, 847, 854
PsiI TTATAA 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 113, 817
PspGI CCWGG 2 cut(s) 113, 817
PspN4I GGNNCC 7 cut(s) 91, 103, 119, 437, 703, 728, 866
PspPI GGNCC 4 cut(s) 118, 435, 686, 872
PsuI RGATCY 1 cut(s) 864
RsaI GTAC 4 cut(s) 631, 654, 728, 997
RsaNI GTAC 4 cut(s) 630, 653, 727, 996
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 231, 366, 936
SatI GCNGC 4 cut(s) 124, 741, 846, 853
Sau3AI GATC 3 cut(s) 10, 864, 986
Sau96I GGNCC 4 cut(s) 118, 435, 686, 872
ScaI AGTACT 1 cut(s) 997
ScrFI CCNGG 4 cut(s) 115, 439, 440, 819
SduI GDGCHC 2 cut(s) 73, 104
SfaNI GCATC 2 cut(s) 402, 480
SgrAI CRCCGGYG 1 cut(s) 887
SinI GGWCC 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 440
Sse9I AATT 3 cut(s) 240, 370, 771
SsiI CCGC 7 cut(s) 121, 179, 200, 333, 430, 576, 845
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 4 cut(s) 113, 437, 438, 817
StyI CCWWGG 2 cut(s) 785, 868
TaaI ACNGT 4 cut(s) 94, 223, 709, 995
TaiI ACGT 2 cut(s) 207, 978
TaqI TCGA 2 cut(s) 978, 985
TasI AATT 3 cut(s) 240, 370, 771
TatI WGTACW 1 cut(s) 995
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 6 cut(s) 36, 464, 473, 600, 609, 980
Tru1I TTAA 3 cut(s) 231, 366, 936
Tru9I TTAA 3 cut(s) 231, 366, 936
TscAI CASTG 2 cut(s) 712, 925
TseI GCWGC 3 cut(s) 123, 740, 852
TspDTI ATGAA 2 cut(s) 312, 494
TspGWI ACGGA 2 cut(s) 94, 375
TspMI CCCGGG 1 cut(s) 438
TspRI CASTG 2 cut(s) 712, 925
VpaK11BI GGWCC 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 438
XmnI GAANNNNTTC 2 cut(s) 323, 501
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 976
ZrmI AGTACT 1 cut(s) 997
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.