Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022562

Physical Location & Seq

Genomic Coordinates Forward (+)

8263130 .. 8271495

Gene Structure 8366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTTTTTATATTTTTTAGAAAAAATTACTTAGACGTTTATCGATTTGAATCATGGGGAGGTTCGTTGCTACCAACATATGAATTTGGACAACAGTTTGTCCCAACAACATTAACTCTTGATTCAGGAGTCACTAGGCCTCCACCACTTTTAAGTGAAGCTGATTTGCTGAGCTGTATGGACAAGGAGGGCATTGGCACAGATGCAACGATGCATGATCACATAAAAAAGCTGCTGGATCGATTTTATGCAACCAAGGACTCAAGCATGCGTTTCTCACCGACCAATCTTGGCGAAGCGTTGGTGATGGGATATGATGACATGGGGTATAAACTGTGGAAACCATACCTTAGAGCTGTTATGGAGCGTGACATGAAAGCTGTTAGTGAAGGTGCTAAGAGCAAAGCTGAAGTTTTGGAAACTTGCTTGCAGCAAATGAAAGCTTGCTTCCTAGATGCAAGGTTGAACAAAGTAAAACTCTTTGAAGCCATGTCAGTATTCTTTGAGAGATCTAGCAGGCCTAGTGGGGATGATCAGCACACATCTGGAGAGTTCGTTCGGCAATGTGGGCTGTGCCACGAAGCAGATATGGTACTTAGACAAAACCGGGATGGAAATTTCATGGTTGGATGCTTGGGTTATCCTCAGGTTGGTCCTTGTCTAAGATATACTTATTCTAGTCTAAATTGCTTGTTTGTAAGAAGTTTTATCTGCATTACTTTTAACAATTTGTTAACAAGGAAGAAAATCTATTGGTTGTATCTAATATTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

259

Amino Acids

29.73

Weight (kDa)

8.02

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_bac	PF01131	8 - 139	2.9e-29	DNA topoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022562)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g12130
rosa_rugosa	Rorug04G0002900
rosa_samantha	Rh4BG116600 Rh5CG489700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	83, 616
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	50, 466, 485
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	7 cut(s)	161, 174, 232, 356, 380, 407, 443
AluI	AGCT	7 cut(s)	161, 174, 232, 356, 380, 407, 443
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	137, 518
ApeKI	GCWGC	2 cut(s)	232, 430
ApoI	RAATTY	2 cut(s)	83, 616
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	270, 316
AvaII	GGWCC	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	219, 442
BccI	CCATC	2 cut(s)	301, 605
BclI	TGATCA	2 cut(s)	217, 532
BcnI	CCSGG	1 cut(s)	608
BfaI	CTAG	5 cut(s)	135, 452, 513, 522, 678
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	2 cut(s)	233, 431
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	2 cut(s)	234, 432
Bme1390I	CCNGG	1 cut(s)	608
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	4 cut(s)	193, 201, 445, 620
BpmI	CTGGAG	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	2 cut(s)	43, 241
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	49
BseCI	ATCGAT	2 cut(s)	43, 241
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	535, 616, 635
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	2 cut(s)	161, 659
BseXI	GCAGC	2 cut(s)	219, 442
BshFI	GGCC	2 cut(s)	139, 520
BshVI	ATCGAT	2 cut(s)	43, 241
BsiSI	CCGG	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	139, 520
Bsp143I	GATC	4 cut(s)	217, 238, 509, 532
Bsp1720I	GCTNAGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	139, 520
BspCNI	CTCAG	2 cut(s)	162, 658
BspDI	ATCGAT	2 cut(s)	43, 241
BspPI	GGATC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	217, 238, 509, 532
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	96, 336
BstC8I	GCNNGC	4 cut(s)	269, 428, 445, 518
BstDEI	CTNAG	7 cut(s)	31, 170, 350, 396, 596, 645, 662
BstF5I	GGATG	3 cut(s)	535, 616, 635
BstKTI	GATC	4 cut(s)	220, 241, 512, 535
BstMBI	GATC	4 cut(s)	217, 238, 509, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	219, 442
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu15I	ATCGAT	2 cut(s)	43, 241
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	139, 520
BsuTUI	ATCGAT	2 cut(s)	43, 241
BtsCI	GGATG	3 cut(s)	535, 616, 635
Cac8I	GCNNGC	4 cut(s)	269, 428, 445, 518
Cfr13I	GGNCC	1 cut(s)	653
ClaI	ATCGAT	2 cut(s)	43, 241
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	7 cut(s)	54, 215, 268, 322, 373, 490, 622
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	7 cut(s)	31, 170, 350, 396, 596, 645, 662
DpnI	GATC	4 cut(s)	219, 240, 511, 534
DpnII	GATC	4 cut(s)	217, 238, 509, 532
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	2 cut(s)	139, 520
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	7 cut(s)	57, 218, 271, 325, 376, 493, 625
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	7 cut(s)	53, 214, 267, 321, 372, 489, 621
FauNDI	CATATG	1 cut(s)	79
FbaI	TGATCA	2 cut(s)	217, 532
Fnu4HI	GCNGC	2 cut(s)	233, 431
FokI	GGATG	3 cut(s)	542, 623, 642
Fsp4HI	GCNGC	2 cut(s)	233, 431
FspBI	CTAG	5 cut(s)	135, 452, 513, 522, 678
GluI	GCNGC	2 cut(s)	233, 431
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	139, 520
HapII	CCGG	1 cut(s)	607
Hin1II	CATG	7 cut(s)	57, 218, 271, 325, 376, 493, 625
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	50, 122, 129, 260
HpaI	GTTAAC	1 cut(s)	735
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	2 cut(s)	270, 316
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	1 cut(s)	776
Hpy188III	TCNNGA	3 cut(s)	119, 126, 546
Hpy8I	GTNNAC	1 cut(s)	735
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	96, 336
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	6 cut(s)	206, 214, 251, 430, 458, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	7 cut(s)	31, 170, 350, 396, 596, 645, 662
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	7 cut(s)	57, 218, 271, 325, 376, 493, 625
Ksp22I	TGATCA	2 cut(s)	217, 532
KspAI	GTTAAC	1 cut(s)	735
Kzo9I	GATC	4 cut(s)	217, 238, 509, 532
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	111, 221, 502, 531, 620, 632
Lsp1109I	GCAGC	2 cut(s)	219, 442
LweI	GCATC	4 cut(s)	193, 201, 445, 620
MaeI	CTAG	5 cut(s)	135, 452, 513, 522, 678
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	130, 368
MalI	GATC	4 cut(s)	219, 240, 511, 534
MboI	GATC	4 cut(s)	217, 238, 509, 532
MboII	GAAGA	1 cut(s)	754
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	5 cut(s)	25, 83, 616, 685, 727
MlyI	GAGTC	2 cut(s)	138, 254
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	4 cut(s)	53, 150, 181, 654
Mph1103I	ATGCAT	1 cut(s)	216
MseI	TTAA	4 cut(s)	113, 152, 723, 734
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	568
NciI	CCSGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	4 cut(s)	217, 238, 509, 532
NlaIII	CATG	7 cut(s)	57, 218, 271, 325, 376, 493, 625
NmuCI	GTSAC	2 cut(s)	130, 368
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PceI	AGGCCT	2 cut(s)	139, 520
PfeI	GAWTC	2 cut(s)	50, 122
PkrI	GCNGC	2 cut(s)	234, 432
PleI	GAGTC	2 cut(s)	137, 254
PpsI	GAGTC	2 cut(s)	137, 254
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SaqAI	TTAA	4 cut(s)	113, 152, 723, 734
SatI	GCNGC	2 cut(s)	233, 431
Sau3AI	GATC	4 cut(s)	217, 238, 509, 532
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	2 cut(s)	138, 254
ScrFI	CCNGG	1 cut(s)	608
SfaNI	GCATC	4 cut(s)	193, 201, 445, 620
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	5 cut(s)	25, 83, 616, 685, 727
SseBI	AGGCCT	2 cut(s)	139, 520
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	5 cut(s)	135, 452, 513, 522, 678
StuI	AGGCCT	2 cut(s)	139, 520
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	96, 336
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	43, 241
TasI	AATT	5 cut(s)	25, 83, 616, 685, 727
TfiI	GAWTC	2 cut(s)	50, 122
Tru1I	TTAA	4 cut(s)	113, 152, 723, 734
Tru9I	TTAA	4 cut(s)	113, 152, 723, 734
TseFI	GTSAC	2 cut(s)	130, 368
TseI	GCWGC	2 cut(s)	232, 430
Tsp45I	GTSAC	2 cut(s)	130, 368
TspDTI	ATGAA	4 cut(s)	96, 389, 452, 610
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	83, 616
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	5 cut(s)	135, 452, 513, 522, 678
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.