Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0022562

Physical Location & Seq

Genomic Coordinates Forward (+)

544934 .. 599562

Gene Structure 54629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGGAGGCAGCGCCTCAGCTCGTCTCCACTGGAATCGAATCCCTTCGCCGGAGCTCCAAGCATTCATTCCCGACCACAACCTCCAGTAGAGTTCGAGTTCGCGTTCCGAAACGATTTAACCGGGTTCTTGCGGTTGCCACCGACCCCAAACCCACCAAGTCCGGCTCATCACCATCAAAACCCAAATCTCCATCGCCGAACTCTGTCAATGGCTCCTCCTCGAGGTCCCCGCCTATCAATGGAGTTTCCACTAGAATTGGAGATGTTTCAAAGGAAATCAAAAGGGTGCGAGCCCAGATGGAAGAAAACGAAGACTTGGCAATACTCATGAAAGGTCTTCGCGGACAAAATTTGAAGGATTCACAGTTTGCTGAGGATGACGTTCAGCTTCGTCTTGTTGAGGTAGATGAAAGCAGTGAATTTTTGCCTGTGGTATATGATCCTGCTAGCATCTCTTCTTATTGGGGAAAACGGCCTCGTGCTGTTGTGACACGTGTAATTCAATTACTCTCTGTAACTGGGGGTTTCCTTTCACGTCTTGCAGGGGATTTTATAAACAAGAAAATCAAAGAGAATGAAGTTGCTAGGGCCATTGAAATAAGGGAAATTGTGACCTCTTTGGGTCCCGCATATATCAAACTTGGGCAAGCATTGAGCATTCGACCAGATATACTGTCACCTGCTGCAATGACTGAGCTGCAAAAGCTTTGTGATAAGGTTCCTTCATTTCCGGATGATATAGCTATGGCTCTCATTGAGGAGGAGCTTGGTCAGCCATGGCAAAACATGTACTCTGAGCTCTCTTCCTCTCCAATTGCTGCTGCATCTCTTGGGCAAGTATATAAGGGCCGGCTAAAAGAAAATGGAGATCTCGTGGCTGTTAAAGTGCAGAGACCTTTTGTTCTTGAAACAGTAACTGTTGATTTGTTTATCATACGGAACTTGGGTTTGGTTCTCCGGAGGTTTCCTCAGATCTCTGTAGATGTGGTTGGATTAGTTGATGAATGGGCAGCTCGTTTCTTTGAAGAGTTGGATTATATTAATGAGGGTGAGAATGGACTACTCTTTGCTGAAATGATGAGAAAAGATCTTCCACAGGTGGTTGTACCAAAAACCTACCCAAAATATACATCAAGAAAGGTTCTTACTACATCATGGTTAGAAGGAGAGAAGCTATCACAAAGTACTGAAAGTGATGTTGGAGAACTGGTCAATGTTGGAGTCATATGCTACCTGAAGCAGTTGCTTGACACTGGATTATTTCATGCTGATCCTCATCCTGGGAATTTGATTCGCACTCCAGATGGCAAGCTTGCCATACTTGATTTTGGTCTGGTCACCAAGTTAACTGATGATCAAAAGTATGGAATGATCGAGGCAATTGCTCACCTTATTCATCGTGATTATGGAGCCATAGTCAAAGACTTTGTCAAGCTTGGTTTTATTGACGAGGGGGTTAATCTAGAACCTATTTTGCCTGTTCTGGCCAAGGTTTTTGATCAGGCTCTTGAAGGTGGAGGAGCAAAAAATATCAACTTCCAAGACTTGGCAGCAGATTTGGCACAAATCACATTTGACTATCCATTTAAGATACCGCCTTATTTTGCTCTTATAATTAGAGCAATTGGGGTCCTGGAAGGCATAGCTTTAGTGGGAAATCCTGATTTTGCTATTGTGGATGAGGCCTATCCATATATTGCCCAGAGGCTACTGACAGATGAATCCCCACGGTTAAGGAATGCTTTACGTTACACAATTTATGGGAAATCTGGAGTTTTTGATGCGGAAAGATTTATTGATGTCATGCAAGCCTTTGAGAGTTTCATAACTGCTGCTAAAAGTGGAGGTGGAGAGGAAATGAATGGTGGTATGGCTGAACTTGGACTTTTGCAAAGTCGAACAGAGTATACCCCTCCTGGATTTGCATCAAATGTGCAACCAGTTCAAACAAGGGCGGCTTTAGCATTTGTACTGTCTGATAAAGGAAACTTTTTCAGAGAATTTCTTCTGGATGAGATTGTGAAAGGCATTGATGCAGTTACAAGAGAACAATTGGTTCGTGCAATGGCACTTCTTGGATTCGGGAATGCTCTTCCAGTTTTCAGCATGGCTCCTAGTTTTGGGCCTTTCAAGCCTGCAGGACTTCTACCAACAATAACTGAGGAGGATAGAGTTATATTGAACAATGTTCAAAGAGTAGTCGAGTTCCTGGCTGCAGGGAGTTCGATATCAAGAACGTCCAATCAGGAATTAAATGTGTCTCAGGTTATCCAAGAGTTTCTTCCTGTTATGCCGAGTATCTCTTCCAAAGTGCTCCCTGAAGTGCTCAGCCGATTATCTTCACGGGTAATAGCACGTGTGATTAGAGATACAATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

793

Amino Acids

87.26

Weight (kDa)

5.61

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	236 - 474	4.5e-63	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022562)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g12130
rosa_rugosa	Rorug04G0002900
rosa_samantha	Rh4BG116600 Rh5CG489700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	554, 1613
AarI	CACCTGC	1 cut(s)	688
AbsI	CCTCGAGG	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	1546
AccI	GTMKAC	1 cut(s)	1907
AccII	CGCG	2 cut(s)	102, 342
AccIII	TCCGGA	2 cut(s)	730, 957
AciI	CCGC	7 cut(s)	131, 230, 342, 627, 1595, 1784, 1955
AclWI	GGATC	2 cut(s)	434, 1265
AcoI	YGGCCR	1 cut(s)	1485
AcsI	RAATTY	4 cut(s)	349, 419, 1285, 2000
AcuI	CTGAAG	2 cut(s)	1256, 2340
AcvI	CACGTG	2 cut(s)	494, 2357
AfaI	GTAC	4 cut(s)	791, 1107, 1186, 1971
AfiI	CCNNNNNNNGG	6 cut(s)	48, 222, 239, 1280, 1546, 2120
AflIII	ACRYGT	4 cut(s)	491, 493, 786, 2356
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	4 cut(s)	1279, 1632, 1915, 2208
AjuI	GAANNNNNNNTTGG	8 cut(s)	50, 82, 932, 964, 1182, 1214, 2265, 2297
Alw21I	GWGCWC	4 cut(s)	56, 801, 2316, 2328
Alw26I	GTCTC	3 cut(s)	28, 886, 2265
AlwI	GGATC	2 cut(s)	434, 1265
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	2 cut(s)	730, 957
AoxI	GGCC	6 cut(s)	473, 588, 847, 1485, 1683, 2123
ApeKI	GCWGC	9 cut(s)	8, 683, 697, 818, 821, 1010, 1550, 1832, 2213
ApoI	RAATTY	4 cut(s)	349, 419, 1285, 2000
ArsI	GACNNNNNNTTYG	2 cut(s)	1413, 1445
AseI	ATTAAT	1 cut(s)	1041
Asp700I	GAANNNNTTC	2 cut(s)	42, 2004
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	6 cut(s)	225, 588, 623, 847, 1630, 2123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	5 cut(s)	162, 669, 1061, 1330, 1379
AsuNHI	GCTAGC	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	225, 623, 1630
BalI	TGGCCA	1 cut(s)	1487
BanII	GRGCYC	3 cut(s)	56, 295, 801
BauI	CACGAG	2 cut(s)	477, 872
BbrPI	CACGTG	2 cut(s)	494, 2357
BbsI	GAAGAC	2 cut(s)	318, 329
Bbv12I	GWGCWC	4 cut(s)	56, 801, 2316, 2328
BbvCI	CCTCAGC	2 cut(s)	15, 372
BbvI	GCAGC	9 cut(s)	20, 670, 684, 805, 808, 1022, 1562, 1819, 2200
BccI	CCATC	4 cut(s)	181, 199, 292, 1298
BceAI	ACGGC	1 cut(s)	488
BcgI	CGANNNNNNTGC	4 cut(s)	1364, 1398, 2205, 2239
BciT130I	CCWGG	4 cut(s)	1281, 1634, 1917, 2210
BclI	TGATCA	2 cut(s)	1354, 1498
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	28, 886, 2265
BfaI	CTAG	5 cut(s)	252, 447, 585, 1463, 2115
BfmI	CTRYAG	3 cut(s)	978, 2136, 2214
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	688
BglII	AGATCT	3 cut(s)	868, 972, 1087
BlpI	GCTNAGC	1 cut(s)	2327
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	5 cut(s)	122, 1281, 1634, 1917, 2210
Bme18I	GGWCC	3 cut(s)	225, 623, 1630
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	6 cut(s)	225, 588, 623, 847, 1630, 2123
BmiI	GGNNCC	8 cut(s)	214, 227, 624, 625, 720, 1411, 1631, 2112
BmrFI	CCNGG	5 cut(s)	122, 1281, 1634, 1917, 2210
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	5 cut(s)	459, 833, 1771, 1934, 2023
BmtI	GCTAGC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	318, 329
BplI	GAGNNNNNCTC	2 cut(s)	952, 984
BpmI	CTGGAG	3 cut(s)	67, 1284, 1791
Bpu10I	CCTNAGC	2 cut(s)	15, 372
Bpu1102I	GCTNAGC	1 cut(s)	2327
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	2 cut(s)	494, 2357
BsaBI	GATNNNNATC	2 cut(s)	1275, 1924
BsaI	GGTCTC	1 cut(s)	886
BsaJI	CCNNGG	4 cut(s)	776, 1280, 1488, 1727
BsaWI	WCCGGW	2 cut(s)	730, 957
BsaXI	ACNNNNNCTCC	6 cut(s)	858, 888, 1194, 1224, 1401, 1431
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 222, 239, 1280, 1546, 2120
Bse118I	RCCGGY	1 cut(s)	849
Bse1I	ACTGG	7 cut(s)	34, 84, 523, 1212, 1258, 1940, 2096
Bse3DI	GCAATG	2 cut(s)	693, 2070
Bse8I	GATNNNNATC	2 cut(s)	1275, 1924
BseAI	TCCGGA	2 cut(s)	730, 957
BseBI	CCWGG	4 cut(s)	1281, 1634, 1917, 2210
BseDI	CCNNGG	4 cut(s)	776, 1280, 1488, 1727
BseGI	GGATG	5 cut(s)	382, 739, 1276, 1684, 2017
BseJI	GATNNNNATC	2 cut(s)	1275, 1924
BseLI	CCNNNNNNNGG	6 cut(s)	48, 222, 239, 1280, 1546, 2120
BseMI	GCAATG	2 cut(s)	693, 2070
BseMII	CTCAG	8 cut(s)	29, 363, 684, 786, 983, 2151, 2276, 2341
BseNI	ACTGG	7 cut(s)	34, 84, 523, 1212, 1258, 1940, 2096
BseRI	GAGGAG	6 cut(s)	205, 208, 773, 776, 1533, 2177
BseXI	GCAGC	9 cut(s)	20, 670, 684, 805, 808, 1022, 1562, 1819, 2200
BsgI	GTGCAG	1 cut(s)	908
Bsh1236I	CGCG	2 cut(s)	102, 342
BshFI	GGCC	6 cut(s)	475, 590, 849, 1487, 1685, 2125
BsiHKAI	GWGCWC	4 cut(s)	56, 801, 2316, 2328
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	6 cut(s)	49, 121, 162, 731, 850, 958
BslFI	GGGAC	2 cut(s)	211, 609
BslI	CCNNNNNNNGG	6 cut(s)	48, 222, 239, 1280, 1546, 2120
BsmAI	GTCTC	3 cut(s)	28, 886, 2265
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	211, 609
BsmI	GAATGC	4 cut(s)	61, 657, 1744, 2092
BsnI	GGCC	6 cut(s)	475, 590, 849, 1487, 1685, 2125
Bso31I	GGTCTC	1 cut(s)	886
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	5 cut(s)	56, 295, 801, 2316, 2328
Bsp13I	TCCGGA	2 cut(s)	730, 957
Bsp143I	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
Bsp1720I	GCTNAGC	1 cut(s)	2327
Bsp19I	CCATGG	1 cut(s)	776
BspACI	CCGC	7 cut(s)	131, 230, 342, 627, 1595, 1784, 1955
BspANI	GGCC	6 cut(s)	475, 590, 849, 1487, 1685, 2125
BspCNI	CTCAG	8 cut(s)	28, 364, 685, 787, 982, 2152, 2275, 2340
BspEI	TCCGGA	2 cut(s)	730, 957
BspFNI	CGCG	2 cut(s)	102, 342
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	8 cut(s)	214, 227, 624, 625, 720, 1411, 1631, 2112
BspMAI	CTGCAG	2 cut(s)	2140, 2218
BspMI	ACCTGC	1 cut(s)	688
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	2 cut(s)	434, 1265
BspQI	GCTCTTC	1 cut(s)	2097
BspTNI	GGTCTC	1 cut(s)	886
BsrDI	GCAATG	2 cut(s)	693, 2070
BsrFI	RCCGGY	1 cut(s)	849
BsrI	ACTGG	7 cut(s)	34, 84, 523, 1212, 1258, 1940, 2096
BssAI	RCCGGY	1 cut(s)	849
BssECI	CCNNGG	4 cut(s)	776, 1280, 1488, 1727
BssMI	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
BssNAI	GTATAC	1 cut(s)	1908
BssSI	CACGAG	2 cut(s)	477, 872
BssT1I	CCWWGG	2 cut(s)	776, 1488
Bst1107I	GTATAC	1 cut(s)	1908
Bst2BI	CACGAG	2 cut(s)	477, 872
Bst2UI	CCWGG	4 cut(s)	1281, 1634, 1917, 2210
Bst4CI	ACNGT	6 cut(s)	366, 675, 913, 919, 1731, 1974
Bst6I	CTCTTC	5 cut(s)	460, 808, 1020, 2097, 2308
BstBAI	YACGTR	2 cut(s)	494, 2357
BstC8I	GCNNGC	8 cut(s)	291, 448, 648, 851, 1310, 1314, 1809, 2136
BstDEI	CTNAG	8 cut(s)	15, 372, 693, 795, 969, 2160, 2262, 2327
BstDSI	CCRYGG	2 cut(s)	776, 1727
BstEII	GGTNACC	1 cut(s)	1336
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	5 cut(s)	382, 739, 1276, 1684, 2017
BstFNI	CGCG	2 cut(s)	102, 342
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	8 cut(s)	442, 871, 975, 1090, 1273, 1357, 1374, 1501
BstMAI	GTCTC	3 cut(s)	28, 886, 2265
BstMBI	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
BstMWI	GCNNNNNNNGC	5 cut(s)	703, 772, 1559, 1961, 2131
BstNI	CCWGG	4 cut(s)	1281, 1634, 1917, 2210
BstNSI	RCATGY	1 cut(s)	790
BstPI	GGTNACC	1 cut(s)	1336
BstSCI	CCNGG	5 cut(s)	120, 1279, 1632, 1915, 2208
BstSFI	CTRYAG	3 cut(s)	978, 2136, 2214
BstUI	CGCG	2 cut(s)	102, 342
BstV1I	GCAGC	9 cut(s)	20, 670, 684, 805, 808, 1022, 1562, 1819, 2200
BstV2I	GAAGAC	2 cut(s)	318, 329
BstX2I	RGATCY	3 cut(s)	868, 972, 1087
BstYI	RGATCY	3 cut(s)	868, 972, 1087
BstZ17I	GTATAC	1 cut(s)	1908
BsuRI	GGCC	6 cut(s)	475, 590, 849, 1487, 1685, 2125
BtgI	CCRYGG	2 cut(s)	776, 1727
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	5 cut(s)	382, 739, 1276, 1684, 2017
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	27, 421, 1251
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	8 cut(s)	291, 448, 648, 851, 1310, 1314, 1809, 2136
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	849
Cfr13I	GGNCC	6 cut(s)	225, 588, 623, 847, 1630, 2123
Csp6I	GTAC	4 cut(s)	790, 1106, 1185, 1970
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	7 cut(s)	328, 777, 787, 1155, 1265, 1804, 2107
CviQI	GTAC	4 cut(s)	790, 1106, 1185, 1970
DdeI	CTNAG	8 cut(s)	15, 372, 693, 795, 969, 2160, 2262, 2327
DpnI	GATC	8 cut(s)	441, 870, 974, 1089, 1272, 1356, 1373, 1500
DpnII	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
EaeI	YGGCCR	1 cut(s)	1485
Eam1104I	CTCTTC	5 cut(s)	460, 808, 1020, 2097, 2308
EarI	CTCTTC	5 cut(s)	460, 808, 1020, 2097, 2308
Ecl136II	GAGCTC	2 cut(s)	54, 799
Eco130I	CCWWGG	2 cut(s)	776, 1488
Eco147I	AGGCCT	1 cut(s)	1685
Eco24I	GRGCYC	3 cut(s)	56, 295, 801
Eco31I	GGTCTC	1 cut(s)	886
Eco32I	GATATC	1 cut(s)	2229
Eco47I	GGWCC	3 cut(s)	225, 623, 1630
Eco53kI	GAGCTC	2 cut(s)	54, 799
Eco57I	CTGAAG	2 cut(s)	1256, 2340
Eco72I	CACGTG	2 cut(s)	494, 2357
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	1336
EcoICRI	GAGCTC	2 cut(s)	54, 799
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoO109I	RGGNCCY	3 cut(s)	225, 623, 1630
EcoO65I	GGTNACC	1 cut(s)	1336
EcoRII	CCWGG	4 cut(s)	1279, 1632, 1915, 2208
EcoRV	GATATC	1 cut(s)	2229
EcoT14I	CCWWGG	2 cut(s)	776, 1488
EcoT38I	GRGCYC	3 cut(s)	56, 295, 801
ErhI	CCWWGG	2 cut(s)	776, 1488
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	7 cut(s)	331, 780, 790, 1158, 1268, 1807, 2110
FalI	AAGNNNNNCTT	6 cut(s)	1726, 1758, 1942, 1974, 2265, 2297
FaqI	GGGAC	2 cut(s)	211, 609
FatI	CATG	7 cut(s)	327, 776, 786, 1154, 1264, 1803, 2106
FauI	CCCGC	2 cut(s)	237, 634
FauNDI	CATATG	1 cut(s)	1226
FbaI	TGATCA	2 cut(s)	1354, 1498
FblI	GTMKAC	1 cut(s)	1907
FokI	GGATG	5 cut(s)	389, 746, 1263, 1691, 2024
FriOI	GRGCYC	3 cut(s)	56, 295, 801
FspBI	CTAG	5 cut(s)	252, 447, 585, 1463, 2115
GlaI	GCGC	1 cut(s)	12
GsuI	CTGGAG	3 cut(s)	67, 1284, 1791
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	6 cut(s)	475, 590, 849, 1487, 1685, 2125
HapII	CCGG	6 cut(s)	49, 121, 162, 731, 850, 958
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	7 cut(s)	331, 780, 790, 1158, 1268, 1807, 2110
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	1347
HindII	GTYRAC	1 cut(s)	1347
HindIII	AAGCTT	3 cut(s)	704, 1310, 1433
HinfI	GANTC	7 cut(s)	33, 38, 359, 1221, 1291, 1721, 2079
HpaI	GTTAAC	1 cut(s)	1347
HpaII	CCGG	6 cut(s)	49, 121, 162, 731, 850, 958
HphI	GGTGA	5 cut(s)	162, 669, 1061, 1330, 1379
Hpy166II	GTNNAC	2 cut(s)	1347, 1908
Hpy188I	TCNGA	5 cut(s)	108, 796, 972, 1978, 1997
Hpy8I	GTNNAC	2 cut(s)	1347, 1908
HpyAV	CCTTC	6 cut(s)	53, 349, 732, 1157, 1505, 1631
HpyCH4III	ACNGT	6 cut(s)	366, 675, 913, 919, 1731, 1974
HpyCH4IV	ACGT	6 cut(s)	381, 493, 535, 1747, 2237, 2356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	703, 772, 1559, 1961, 2131
HpyF3I	CTNAG	8 cut(s)	15, 372, 693, 795, 969, 2160, 2262, 2327
HpySE526I	ACGT	6 cut(s)	381, 493, 535, 1747, 2237, 2356
Hsp92II	CATG	7 cut(s)	331, 780, 790, 1158, 1268, 1807, 2110
HspAI	GCGC	1 cut(s)	11
KflI	GGGWCCC	1 cut(s)	623
Kpn2I	TCCGGA	2 cut(s)	730, 957
KroI	GCCGGC	1 cut(s)	849
KroNI	GCCGGC	1 cut(s)	851
Ksp22I	TGATCA	2 cut(s)	1354, 1498
KspAI	GTTAAC	1 cut(s)	1347
Kzo9I	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
LguI	GCTCTTC	1 cut(s)	2097
LmnI	GCTCC	8 cut(s)	51, 59, 218, 763, 1409, 1520, 2116, 2319
Lsp1109I	GCAGC	9 cut(s)	20, 670, 684, 805, 808, 1022, 1562, 1819, 2200
LweI	GCATC	5 cut(s)	459, 833, 1771, 1934, 2023
MaeI	CTAG	5 cut(s)	252, 447, 585, 1463, 2115
MaeII	ACGT	6 cut(s)	381, 493, 535, 1747, 2237, 2356
MaeIII	GTNAC	8 cut(s)	487, 514, 610, 675, 913, 1336, 1748, 2038
MalI	GATC	8 cut(s)	441, 870, 974, 1089, 1272, 1356, 1373, 1500
MboI	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
MfeI	CAATTG	4 cut(s)	813, 1380, 1623, 2051
MflI	RGATCY	3 cut(s)	868, 972, 1087
MhlI	GDGCHC	5 cut(s)	56, 295, 801, 2316, 2328
MlsI	TGGCCA	1 cut(s)	1487
MluNI	TGGCCA	1 cut(s)	1487
MlyI	GAGTC	1 cut(s)	1230
MmeI	TCCRAC	4 cut(s)	970, 1011, 1180, 1198
Mox20I	TGGCCA	1 cut(s)	1487
MroI	TCCGGA	2 cut(s)	730, 957
MroNI	GCCGGC	1 cut(s)	849
MroXI	GAANNNNTTC	2 cut(s)	42, 2004
MscI	TGGCCA	1 cut(s)	1487
MseI	TTAA	8 cut(s)	117, 882, 1041, 1346, 1458, 1587, 1733, 2252
Msp20I	TGGCCA	1 cut(s)	1487
MspI	CCGG	6 cut(s)	49, 121, 162, 731, 850, 958
MspR9I	CCNGG	5 cut(s)	122, 1281, 1634, 1917, 2210
MunI	CAATTG	4 cut(s)	813, 1380, 1623, 2051
Mva1269I	GAATGC	4 cut(s)	61, 657, 1744, 2092
MvaI	CCWGG	4 cut(s)	1281, 1634, 1917, 2210
MvnI	CGCG	2 cut(s)	102, 342
MwoI	GCNNNNNNNGC	5 cut(s)	703, 772, 1559, 1961, 2131
NaeI	GCCGGC	1 cut(s)	851
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	776
NdeI	CATATG	1 cut(s)	1226
NdeII	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
NgoMIV	GCCGGC	1 cut(s)	849
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	7 cut(s)	331, 780, 790, 1158, 1268, 1807, 2110
NlaIV	GGNNCC	8 cut(s)	214, 227, 624, 625, 720, 1411, 1631, 2112
NmeAIII	GCCGAG	1 cut(s)	2319
NmuCI	GTSAC	4 cut(s)	487, 610, 675, 1336
NspI	RCATGY	1 cut(s)	790
PaeR7I	CTCGAG	1 cut(s)	220
PagI	TCATGA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	1685
PciI	ACATGT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	2097
PctI	GAATGC	4 cut(s)	61, 657, 1744, 2092
PdiI	GCCGGC	1 cut(s)	851
PdmI	GAANNNNTTC	2 cut(s)	42, 2004
PfeI	GAWTC	6 cut(s)	33, 38, 359, 1291, 1721, 2079
PflFI	GACNNNGTC	1 cut(s)	1427
PflMI	CCANNNNNTGG	1 cut(s)	1546
PfoI	TCCNGGA	2 cut(s)	1632, 1915
PleI	GAGTC	1 cut(s)	1229
PmaCI	CACGTG	2 cut(s)	494, 2357
PmlI	CACGTG	2 cut(s)	494, 2357
PpsI	GAGTC	1 cut(s)	1229
Ppu21I	YACGTR	2 cut(s)	494, 2357
PpuMI	RGGWCCY	3 cut(s)	225, 623, 1630
PscI	ACATGT	1 cut(s)	786
PshBI	ATTAAT	1 cut(s)	1041
PsiI	TTATAA	2 cut(s)	554, 1613
Psp124BI	GAGCTC	2 cut(s)	56, 801
Psp5II	RGGWCCY	3 cut(s)	225, 623, 1630
Psp6I	CCWGG	4 cut(s)	1279, 1632, 1915, 2208
PspCI	CACGTG	2 cut(s)	494, 2357
PspEI	GGTNACC	1 cut(s)	1336
PspGI	CCWGG	4 cut(s)	1279, 1632, 1915, 2208
PspN4I	GGNNCC	8 cut(s)	214, 227, 624, 625, 720, 1411, 1631, 2112
PspPI	GGNCC	6 cut(s)	225, 588, 623, 847, 1630, 2123
PspPPI	RGGWCCY	3 cut(s)	225, 623, 1630
PspXI	VCTCGAGB	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	1891, 1923
PstI	CTGCAG	2 cut(s)	2140, 2218
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	3 cut(s)	868, 972, 1087
PsyI	GACNNNGTC	1 cut(s)	1427
RsaI	GTAC	4 cut(s)	791, 1107, 1186, 1971
RsaNI	GTAC	4 cut(s)	790, 1106, 1185, 1970
SacI	GAGCTC	2 cut(s)	56, 801
SapI	GCTCTTC	1 cut(s)	2097
SaqAI	TTAA	8 cut(s)	117, 882, 1041, 1346, 1458, 1587, 1733, 2252
Sau3AI	GATC	8 cut(s)	439, 868, 972, 1087, 1270, 1354, 1371, 1498
Sau96I	GGNCC	6 cut(s)	225, 588, 623, 847, 1630, 2123
SbfI	CCTGCAGG	1 cut(s)	2140
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	1 cut(s)	1230
ScrFI	CCNGG	5 cut(s)	122, 1281, 1634, 1917, 2210
SdaI	CCTGCAGG	1 cut(s)	2140
SduI	GDGCHC	5 cut(s)	56, 295, 801, 2316, 2328
SfaNI	GCATC	5 cut(s)	459, 833, 1771, 1934, 2023
SfcI	CTRYAG	3 cut(s)	978, 2136, 2214
Sfr274I	CTCGAG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	225, 623, 1630
SlaI	CTCGAG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse8387I	CCTGCAGG	1 cut(s)	2140
SseBI	AGGCCT	1 cut(s)	1685
SsiI	CCGC	7 cut(s)	131, 230, 342, 627, 1595, 1784, 1955
SspMI	CTAG	5 cut(s)	252, 447, 585, 1463, 2115
SstI	GAGCTC	2 cut(s)	56, 801
StuI	AGGCCT	1 cut(s)	1685
StyD4I	CCNGG	5 cut(s)	120, 1279, 1632, 1915, 2208
StyI	CCWWGG	2 cut(s)	776, 1488
TaaI	ACNGT	6 cut(s)	366, 675, 913, 919, 1731, 1974
TaiI	ACGT	6 cut(s)	384, 496, 538, 1750, 2240, 2359
TaqI	TCGA	8 cut(s)	36, 94, 221, 661, 1374, 1897, 2202, 2225
TatI	WGTACW	3 cut(s)	789, 1184, 1969
TauI	GCSGC	1 cut(s)	1958
TfiI	GAWTC	6 cut(s)	33, 38, 359, 1291, 1721, 2079
Tru1I	TTAA	8 cut(s)	117, 882, 1041, 1346, 1458, 1587, 1733, 2252
Tru9I	TTAA	8 cut(s)	117, 882, 1041, 1346, 1458, 1587, 1733, 2252
TscAI	CASTG	3 cut(s)	34, 421, 1258
TseFI	GTSAC	4 cut(s)	487, 610, 675, 1336
TseI	GCWGC	9 cut(s)	8, 683, 697, 818, 821, 1010, 1550, 1832, 2213
Tsp45I	GTSAC	4 cut(s)	487, 610, 675, 1336
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	3 cut(s)	34, 421, 1258
Tth111I	GACNNNGTC	1 cut(s)	1427
Van91I	CCANNNNNTGG	1 cut(s)	1546
VpaK11BI	GGWCC	3 cut(s)	225, 623, 1630
VspI	ATTAAT	1 cut(s)	1041
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	4 cut(s)	349, 419, 1285, 2000
XbaI	TCTAGA	1 cut(s)	1462
XceI	RCATGY	1 cut(s)	790
XhoI	CTCGAG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	1907
XmnI	GAANNNNTTC	2 cut(s)	42, 2004
XspI	CTAG	5 cut(s)	252, 447, 585, 1463, 2115
ZrmI	AGTACT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.