Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010720

Physical Location & Seq

Genomic Coordinates Forward (+)

9023955 .. 9025108

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATACCACTCAGAAAACCACTTCCCCACCTCCCCTTCACCCCCAGTTCCAAATCTTCATCCTTCCAATCACTCGCCTCCTACTTCACTCTCACTCCAAATCCAAACCCAACAATTTCCTCACCACACCCACCTGAATCACCCACTACCCACATACCAAATCCCATACAACACCCCAAACCCACCTTCAAAATCCCACCTTTCGGTCCTATTCCTCCGCCATTCACTCAAACCAGGCCTTTCTCAGCCGCAAATTCAGACCCTTCTCAGCCAATGCCGGTTGTTTCCACCGACACTTCACCCTACGACAGTTCGCAGCCCATCGATGCCGGCTCTTCCATTCGAAAACCGATCAGTTTGTGGCCTGGAATGTACAGTTCGCCTGTCACAAATGCCCTGTGGGAAGCGAGATCGGAAATGTATGGGGATGCACTGAGTGACGCGCCTCCGCAGAGTGAATTGGTGGCAAGGACTCCGGCGCAGAGCAGGACCGGTATTCTGTACAAGTTTTCGTCTGATTATAAACTGAGAGAGCAGTACAGGAACCCCTGGAATGGGATTAGGATGGGGAAGTTGCTTGATGGATCTCGATGCTCTTGCAGGAACCATTGCATTCAAGCACTGCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

211

Amino Acids

23.17

Weight (kDa)

9.37

Isoelectric Point (pI)

69.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30720
fragaria_vesca	FvH4_1g00450
malus_domestica	MD02G1003700.v1.1 MD15G1147000.v1.1
prunus_persica	Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1
pyrus_communis	pycom02g00210 pycom15g13180 pycom15g13190
rosa_chinensis	RchiOBHm_Chr2g0084961
rosa_laevigata	RLG00000015651
rosa_multiflora	Rmu_sc0008647.1_g000025
rosa_roxburghii	Rroxscaffold_2G00155690
rosa_rugosa	Rorug01G0457300
rosa_samantha	Rh2AG004900 Rh2BG006100 Rh2CG006700 Rh2DG006500
rosa_wichuraiana	Rw2G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccII	CGCG	1 cut(s)	443
AciI	CCGC	3 cut(s)	218, 249, 449
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	253
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	3 cut(s)	374, 503, 539
AfiI	CCNNNNNNNGG	3 cut(s)	203, 554, 555
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	190, 617
AjnI	CCWGG	3 cut(s)	233, 364, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AlwI	GGATC	1 cut(s)	592
AoxI	GGCC	2 cut(s)	236, 362
ApeKI	GCWGC	2 cut(s)	316, 625
ApoI	RAATTY	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	445, 481
AspS9I	GGNCC	2 cut(s)	206, 489
AsuHPI	GGTGA	4 cut(s)	31, 114, 132, 291
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	206, 489
BbvI	GCAGC	2 cut(s)	328, 612
BccI	CCATC	3 cut(s)	329, 559, 575
BcgI	CGANNNNNNTGC	2 cut(s)	579, 613
BciT130I	CCWGG	3 cut(s)	235, 366, 550
BisI	GCNGC	3 cut(s)	249, 317, 626
BlsI	GCNGC	3 cut(s)	250, 318, 627
Bme1390I	CCNGG	3 cut(s)	235, 366, 550
Bme18I	GGWCC	2 cut(s)	206, 489
BmgT120I	GGNCC	2 cut(s)	206, 489
BmiI	GGNNCC	2 cut(s)	545, 605
BmrFI	CCNGG	3 cut(s)	235, 366, 550
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	3 cut(s)	316, 418, 581
BmuI	ACTGGG	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 554, 555
Bse118I	RCCGGY	3 cut(s)	277, 329, 491
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	3 cut(s)	235, 366, 550
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	3 cut(s)	59, 433, 570
BseLI	CCNNNNNNNGG	3 cut(s)	203, 554, 555
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	5 cut(s)	25, 258, 281, 425, 518
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	328, 612
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	238, 364
BshTI	ACCGGT	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	4 cut(s)	278, 330, 476, 492
BslI	CCNNNNNNNGG	3 cut(s)	203, 554, 555
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	2 cut(s)	238, 364
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1407I	TGTACA	2 cut(s)	372, 501
Bsp143I	GATC	3 cut(s)	351, 410, 584
BspACI	CCGC	3 cut(s)	218, 249, 449
BspANI	GGCC	2 cut(s)	238, 364
BspCNI	CTCAG	5 cut(s)	24, 257, 280, 426, 519
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	545, 605
BspPI	GGATC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	3 cut(s)	277, 329, 491
BsrGI	TGTACA	2 cut(s)	372, 501
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	3 cut(s)	277, 329, 491
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	3 cut(s)	351, 410, 584
Bst2UI	CCWGG	3 cut(s)	235, 366, 550
Bst4CI	ACNGT	2 cut(s)	311, 377
Bst6I	CTCTTC	1 cut(s)	340
BstAUI	TGTACA	2 cut(s)	372, 501
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	5 cut(s)	11, 244, 267, 434, 527
BstF5I	GGATG	3 cut(s)	59, 433, 570
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	445, 481
BstKTI	GATC	3 cut(s)	354, 413, 587
BstMBI	GATC	3 cut(s)	351, 410, 584
BstNI	CCWGG	3 cut(s)	235, 366, 550
BstSCI	CCNGG	3 cut(s)	233, 364, 548
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	328, 612
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	238, 364
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	59, 433, 570
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	2 cut(s)	431, 620
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	2 cut(s)	445, 481
Cfr10I	RCCGGY	3 cut(s)	277, 329, 491
Cfr13I	GGNCC	2 cut(s)	206, 489
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	373, 502, 538
CspAI	ACCGGT	1 cut(s)	491
CviJI	RGCY	6 cut(s)	238, 248, 271, 319, 333, 364
CviKI_1	RGCY	6 cut(s)	238, 248, 271, 319, 333, 364
CviQI	GTAC	3 cut(s)	373, 502, 538
DdeI	CTNAG	5 cut(s)	11, 244, 267, 434, 527
DpnI	GATC	3 cut(s)	353, 412, 586
DpnII	GATC	3 cut(s)	351, 410, 584
DraIII	CACNNNGTG	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	206, 489
EcoRII	CCWGG	3 cut(s)	233, 364, 548
FaiI	YATR	4 cut(s)	155, 167, 423, 522
Fnu4HI	GCNGC	3 cut(s)	249, 317, 626
FokI	GGATG	3 cut(s)	46, 440, 577
Fsp4HI	GCNGC	3 cut(s)	249, 317, 626
GlaI	GCGC	2 cut(s)	444, 480
GluI	GCNGC	3 cut(s)	249, 317, 626
HaeIII	GGCC	2 cut(s)	238, 364
HapII	CCGG	4 cut(s)	278, 330, 476, 492
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	445, 481
Hin6I	GCGC	2 cut(s)	443, 479
HinP1I	GCGC	2 cut(s)	443, 479
HinfI	GANTC	2 cut(s)	137, 472
HpaII	CCGG	4 cut(s)	278, 330, 476, 492
HphI	GGTGA	4 cut(s)	31, 114, 132, 291
Hpy188I	TCNGA	4 cut(s)	14, 259, 415, 517
Hpy188III	TCNNGA	1 cut(s)	588
HpyAV	CCTTC	4 cut(s)	46, 73, 196, 273
HpyCH4III	ACNGT	2 cut(s)	311, 377
HpyCH4V	TGCA	4 cut(s)	431, 600, 612, 628
HpyF3I	CTNAG	5 cut(s)	11, 244, 267, 434, 527
HspAI	GCGC	2 cut(s)	443, 479
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	351, 410, 584
LguI	GCTCTTC	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	328, 612
LweI	GCATC	3 cut(s)	316, 418, 581
MaeIII	GTNAC	2 cut(s)	385, 437
MalI	GATC	3 cut(s)	353, 412, 586
MboI	GATC	3 cut(s)	351, 410, 584
MboII	GAAGA	2 cut(s)	48, 327
MflI	RGATCY	1 cut(s)	584
MluCI	AATT	3 cut(s)	114, 253, 458
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	5 cut(s)	41, 88, 130, 225, 456
MroNI	GCCGGC	1 cut(s)	329
MspI	CCGG	4 cut(s)	278, 330, 476, 492
MspR9I	CCNGG	3 cut(s)	235, 366, 550
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	3 cut(s)	235, 366, 550
MvnI	CGCG	1 cut(s)	443
NaeI	GCCGGC	1 cut(s)	331
NdeII	GATC	3 cut(s)	351, 410, 584
NgoMIV	GCCGGC	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	545, 605
NmuCI	GTSAC	2 cut(s)	385, 437
NspV	TTCGAA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	340
PctI	GAATGC	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	3 cut(s)	250, 318, 627
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	522
Psp6I	CCWGG	3 cut(s)	233, 364, 548
PspGI	CCWGG	3 cut(s)	233, 364, 548
PspN4I	GGNNCC	2 cut(s)	545, 605
PspPI	GGNCC	2 cut(s)	206, 489
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	3 cut(s)	374, 503, 539
RsaNI	GTAC	3 cut(s)	373, 502, 538
SapI	GCTCTTC	1 cut(s)	340
SatI	GCNGC	3 cut(s)	249, 317, 626
Sau3AI	GATC	3 cut(s)	351, 410, 584
Sau96I	GGNCC	2 cut(s)	206, 489
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	235, 366, 550
SetI	ASST	4 cut(s)	33, 136, 188, 202
SfaNI	GCATC	3 cut(s)	316, 418, 581
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	2 cut(s)	206, 489
Sse9I	AATT	3 cut(s)	114, 253, 458
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	218, 249, 449
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	233, 364, 548
TaaI	ACNGT	2 cut(s)	311, 377
TaqI	TCGA	3 cut(s)	324, 343, 589
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	114, 253, 458
TatI	WGTACW	3 cut(s)	372, 501, 537
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	2 cut(s)	438, 627
TseFI	GTSAC	2 cut(s)	385, 437
TseI	GCWGC	2 cut(s)	316, 625
Tsp45I	GTSAC	2 cut(s)	385, 437
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	438, 627
VpaK11BI	GGWCC	2 cut(s)	206, 489
XapI	RAATTY	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.