Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010720

Physical Location & Seq

Genomic Coordinates Forward (+)

9025158 .. 9026996

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTTATGAAAAAACCGATCCTTGTCGACACGGATTTGAATATAGGCGGTGCTGTCGTATGGGTTGGGAAGTCATCCATGGAGATTCAGCTGGAAGTGACTCAATCTTTGGAGGGATCCTCATACACATCAGAGTCTGTTGCTCTTATAGCAAACTTCACATTTGTAGCCCGTGATTCTAAGTCTGGAAGATCAGCTCCGGTTAACCAGATATCGCCTGAGACTGAGAAAGAAAAATTGCTCTGGGAAGAAGCAGATAAGAGGAATAAAATGAGGAAAAAGAAGAGAGCTGAACATAAAACAGATACTGAAAACCAGGACACAGACAGAGTCAACGCCCTGTTAGCAGAAGGTCGAGTTTTCTGTGACATGCCAGCACTGGCAGACCGAGATAGCATTCTAATAAGGGATACTTGCCTCCAGAACTCCTTTATTTGCCAGCCACAGCAGAGGAACATCCATGGTCGGATCGATTTTGGAGGATTTTTGATGCGAAGAGCATTTGAAATTGCCTTCTCAACAACATATGCATTTGCTGGTGTAGCACCACACTTCCTGGAAGTTGATCATGTTGATTTTGTTAGACCTGTCGATGTAGGAAACTTTCTCCGGTTGAAGTCTTGTGTTCTCTATACAGAACTTGAGAACCCAGCTGAACCTCTAATAAATGTGGAAGTCGTTGCTCATGTTACACAGCCTGAGCTTAGGTCCAGTGAGGTATCAAACAAATTCTACTTCACATTCTCTGTCCCTCCTGAAGCCATGAAGGATGGGATCCGGATTCGGAATGTAGTTCCTGCTACGGAAGAGGAAGCACGGCGGGTGATTGAACGAATGGATGCTGAGAACTCCCAGTTCGCTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

290

Amino Acids

32.6

Weight (kDa)

5.43

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30720
fragaria_vesca	FvH4_1g00450
malus_domestica	MD02G1003700.v1.1 MD15G1147000.v1.1
prunus_persica	Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1
pyrus_communis	pycom02g00210 pycom15g13180 pycom15g13190
rosa_chinensis	RchiOBHm_Chr2g0084961
rosa_laevigata	RLG00000015651
rosa_multiflora	Rmu_sc0008647.1_g000025
rosa_roxburghii	Rroxscaffold_2G00155690
rosa_rugosa	Rorug01G0457300
rosa_samantha	Rh2AG004900 Rh2BG006100 Rh2CG006700 Rh2DG006500
rosa_wichuraiana	Rw2G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	777
AciI	CCGC	2 cut(s)	48, 820
AclWI	GGATC	6 cut(s)	13, 111, 124, 476, 769, 782
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	40, 506, 616, 830
AjnI	CCWGG	2 cut(s)	315, 555
AluBI	AGCT	5 cut(s)	91, 197, 290, 653, 703
AluI	AGCT	5 cut(s)	91, 197, 290, 653, 703
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	6 cut(s)	13, 111, 124, 476, 769, 782
AlwNI	CAGNNNCTG	2 cut(s)	137, 308
Aor13HI	TCCGGA	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	860
ApoI	RAATTY	1 cut(s)	728
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspS9I	GGNCC	1 cut(s)	708
AsuHPI	GGTGA	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	708
BamHI	GGATCC	2 cut(s)	116, 774
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	1 cut(s)	764
BceAI	ACGGC	1 cut(s)	833
BciT130I	CCWGG	2 cut(s)	317, 557
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	861
BlsI	GCNGC	1 cut(s)	862
Bme1390I	CCNGG	2 cut(s)	317, 557
Bme18I	GGWCC	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	2 cut(s)	118, 776
BmrFI	CCNGG	2 cut(s)	317, 557
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	2 cut(s)	480, 829
BmuI	ACTGGG	1 cut(s)	847
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	2 cut(s)	699, 704
BpuEI	CTTGAG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	78, 460
BsaWI	WCCGGW	3 cut(s)	199, 609, 777
Bse1I	ACTGG	3 cut(s)	384, 711, 853
BseAI	TCCGGA	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	317, 557
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	78, 460
BseGI	GGATG	4 cut(s)	74, 456, 775, 844
BseMII	CTCAG	4 cut(s)	210, 216, 690, 834
BseNI	ACTGG	3 cut(s)	384, 711, 853
BseXI	GCAGC	1 cut(s)	847
BseYI	CCCAGC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	200, 610, 778
BslFI	GGGAC	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	777
Bsp143I	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
Bsp19I	CCATGG	2 cut(s)	78, 460
BspACI	CCGC	2 cut(s)	48, 820
BspCNI	CTCAG	4 cut(s)	211, 217, 691, 835
BspDI	ATCGAT	1 cut(s)	471
BspEI	TCCGGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	118, 776
BspPI	GGATC	6 cut(s)	13, 111, 124, 476, 769, 782
BspQI	GCTCTTC	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	384, 711, 853
BssECI	CCNNGG	2 cut(s)	78, 460
BssMI	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
BssT1I	CCWWGG	2 cut(s)	78, 460
Bst2UI	CCWGG	2 cut(s)	317, 557
Bst6I	CTCTTC	3 cut(s)	278, 490, 801
BstC8I	GCNNGC	2 cut(s)	375, 440
BstDEI	CTNAG	6 cut(s)	180, 219, 225, 699, 704, 843
BstDSI	CCRYGG	2 cut(s)	78, 460
BstF5I	GGATG	4 cut(s)	74, 456, 775, 844
BstKTI	GATC	6 cut(s)	21, 119, 194, 471, 568, 777
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 344, 542
BstNI	CCWGG	2 cut(s)	317, 557
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	315, 555
BstV1I	GCAGC	1 cut(s)	847
BstX2I	RGATCY	2 cut(s)	116, 774
BstYI	RGATCY	2 cut(s)	116, 774
Bsu15I	ATCGAT	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	403
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	78, 460
BtsCI	GGATG	4 cut(s)	74, 456, 775, 844
BtsIMutI	CAGTG	2 cut(s)	377, 718
Cac8I	GCNNGC	2 cut(s)	375, 440
CaiI	CAGNNNCTG	2 cut(s)	137, 308
Cfr13I	GGNCC	1 cut(s)	708
ClaI	ATCGAT	1 cut(s)	471
CviAII	CATG	6 cut(s)	79, 370, 461, 569, 686, 763
CviJI	RGCY	9 cut(s)	91, 170, 197, 290, 442, 653, 697, 703, 761
CviKI_1	RGCY	9 cut(s)	91, 170, 197, 290, 442, 653, 697, 703, 761
DdeI	CTNAG	6 cut(s)	180, 219, 225, 699, 704, 843
DpnI	GATC	6 cut(s)	20, 118, 193, 470, 567, 776
DpnII	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
Eam1104I	CTCTTC	3 cut(s)	278, 490, 801
EarI	CTCTTC	3 cut(s)	278, 490, 801
Eco130I	CCWWGG	2 cut(s)	78, 460
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	315, 555
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	78, 460
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	78, 460
FaeI	CATG	6 cut(s)	82, 373, 464, 572, 689, 766
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	6 cut(s)	78, 369, 460, 568, 685, 762
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	861
FokI	GGATG	4 cut(s)	61, 443, 782, 851
Fsp4HI	GCNGC	1 cut(s)	861
GluI	GCNGC	1 cut(s)	861
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	404
HapII	CCGG	3 cut(s)	200, 610, 778
Hin1II	CATG	6 cut(s)	82, 373, 464, 572, 689, 766
HincII	GTYRAC	3 cut(s)	28, 205, 334
HindII	GTYRAC	3 cut(s)	28, 205, 334
HinfI	GANTC	6 cut(s)	85, 100, 134, 176, 330, 781
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	3 cut(s)	200, 610, 778
HphI	GGTGA	1 cut(s)	835
Hpy166II	GTNNAC	3 cut(s)	28, 205, 334
Hpy188I	TCNGA	3 cut(s)	133, 468, 786
Hpy188III	TCNNGA	4 cut(s)	186, 421, 755, 778
Hpy8I	GTNNAC	3 cut(s)	28, 205, 334
HpyAV	CCTTC	3 cut(s)	344, 523, 760
HpyCH4V	TGCA	2 cut(s)	530, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 344, 542
HpyF3I	CTNAG	6 cut(s)	180, 219, 225, 699, 704, 843
Hsp92II	CATG	6 cut(s)	82, 373, 464, 572, 689, 766
Kpn2I	TCCGGA	1 cut(s)	777
Ksp22I	TGATCA	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	2 cut(s)	480, 829
MaeIII	GTNAC	3 cut(s)	97, 365, 688
MalI	GATC	6 cut(s)	20, 118, 193, 470, 567, 776
MboI	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
MboII	GAAGA	5 cut(s)	201, 260, 295, 507, 818
MflI	RGATCY	2 cut(s)	116, 774
MluCI	AATT	3 cut(s)	236, 507, 728
MlyI	GAGTC	3 cut(s)	94, 143, 339
MmeI	TCCRAC	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	532
MroI	TCCGGA	1 cut(s)	777
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	91, 653
MspI	CCGG	3 cut(s)	200, 610, 778
MspR9I	CCNGG	2 cut(s)	317, 557
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	317, 557
MwoI	GCNNNNNNNGC	3 cut(s)	149, 344, 542
NcoI	CCATGG	2 cut(s)	78, 460
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
NlaIII	CATG	6 cut(s)	82, 373, 464, 572, 689, 766
NlaIV	GGNNCC	2 cut(s)	118, 776
NmuCI	GTSAC	2 cut(s)	97, 365
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	490
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	85, 176, 781
PflFI	GACNNNGTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	862
PleI	GAGTC	3 cut(s)	94, 142, 338
PpsI	GAGTC	3 cut(s)	94, 142, 338
Psp6I	CCWGG	2 cut(s)	315, 555
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	315, 555
PspN4I	GGNNCC	2 cut(s)	118, 776
PspPI	GGNCC	1 cut(s)	708
PstNI	CAGNNNCTG	2 cut(s)	137, 308
PsuI	RGATCY	2 cut(s)	116, 774
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	2 cut(s)	91, 653
SalI	GTCGAC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	490
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	861
Sau3AI	GATC	6 cut(s)	18, 116, 191, 468, 565, 774
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	3 cut(s)	94, 143, 339
ScrFI	CCNGG	2 cut(s)	317, 557
SfaNI	GCATC	2 cut(s)	480, 829
SinI	GGWCC	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	3 cut(s)	236, 507, 728
SsiI	CCGC	2 cut(s)	48, 820
StyD4I	CCNGG	2 cut(s)	315, 555
StyI	CCWWGG	2 cut(s)	78, 460
TaqI	TCGA	4 cut(s)	27, 355, 471, 591
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	236, 507, 728
TfiI	GAWTC	3 cut(s)	85, 176, 781
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	384, 718
TseFI	GTSAC	2 cut(s)	97, 365
TseI	GCWGC	1 cut(s)	860
Tsp45I	GTSAC	2 cut(s)	97, 365
TspDTI	ATGAA	2 cut(s)	23, 779
TspGWI	ACGGA	2 cut(s)	47, 818
TspRI	CASTG	2 cut(s)	384, 718
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	708
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.