pycom15g21430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014437
Physical Location & Seq
Reverse (-)
15390086 .. 15391484
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGTTCAGAACCGTGTTCCTTCCTGCTTTCCTTCTCTTTTCAAAACGCAGACGCAGAGCTTCCGCCATGAAAGAAGGTTACGAGATTGACGAGAAAAAGCAAGCTGCTGCTGATGTATTGTTTAACTATTCAAAATTTGTGATGGCGTGCATTGGAAATCGAGTTCGACCTTGTGACTTGCGGTTGCATCTGATGAAGGAAGTTTCAGGTATACCAACTTCTCTGAAGAAAGATGCATCCCAGAGAGCAGCATCTCCTGATGCAATGGCCGAATCATCAAGCTCGGGTACAGCTAGACTTGATAAGACAGACAGTTTTCGGGACCGGTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

9.94

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35980
fragaria_vesca FvH4_1g11510 FvH4_1g11510
malus_domestica MD02G1128000.v1.1 MD15G1243200.v1.1
prunus_persica Prupe.7G170900_v2.0.a1
pyrus_communis pycom15g21430
rosa_chinensis RchiOBHm_Chr2g0099131
rosa_multiflora Rmu_sc0012711.1_g000002
rosa_roxburghii Rroxscaffold_2G00143410
rosa_rugosa Rorug02G0077000 Rorug02G0077100
rosa_samantha Rh2AG126100 Rh2BG129400 Rh2CG130400 Rh2DG130800
rosa_wichuraiana Rw2G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 211
AciI CCGC 2 cut(s) 63, 181
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 42, 132
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 59, 104, 282, 293
AluI AGCT 4 cut(s) 59, 104, 282, 293
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 104, 107, 248
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 202, 234
BbvI GCAGC 3 cut(s) 91, 94, 260
BccI CCATC 1 cut(s) 136
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 332
BisI GCNGC 3 cut(s) 105, 108, 249
BlsI GCNGC 3 cut(s) 106, 109, 250
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 5 cut(s) 196, 223, 245, 250, 260
BsaWI WCCGGW 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 270
BseGI GGATG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 91, 94, 260
BshFI GGCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 325
BsnI GGCC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 283
BspACI CCGC 2 cut(s) 63, 181
BspANI GGCC 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssNAI GTATAC 1 cut(s) 212
Bst1107I GTATAC 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 13, 314
BstC8I GCNNGC 2 cut(s) 102, 148
BstF5I GGATG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 91, 94, 260
BstZ17I GTATAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 102, 148
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 322
CseI GACGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 324
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 59, 104, 269, 282, 293
CviKI_1 RGCY 5 cut(s) 59, 104, 269, 282, 293
CviQI GTAC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 267
EciI GGCGGA 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 212, 334
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 105, 108, 249
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 105, 108, 249
FspBI CTAG 1 cut(s) 294
GluI GCNGC 3 cut(s) 105, 108, 249
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 8, 192, 225
Hpy188III TCNNGA 2 cut(s) 257, 320
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 4 cut(s) 29, 41, 68, 190
HpyCH4III ACNGT 2 cut(s) 13, 314
HpyCH4V TGCA 4 cut(s) 150, 187, 236, 263
Hsp92II CATG 1 cut(s) 70
LpnPI CCDG 4 cut(s) 36, 192, 254, 270
Lsp1109I GCAGC 3 cut(s) 91, 94, 260
LweI GCATC 5 cut(s) 196, 223, 245, 250, 260
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 77, 173
MboII GAAGA 1 cut(s) 238
MluCI AATT 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 325
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 272
PinAI ACCGGT 1 cut(s) 324
PkrI GCNGC 3 cut(s) 106, 109, 250
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 322
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 105, 108, 249
Sau96I GGNCC 1 cut(s) 322
SetI ASST 7 cut(s) 61, 79, 106, 172, 211, 284, 295
SfaNI GCATC 5 cut(s) 196, 223, 245, 250, 260
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 322
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 63, 181
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 13, 314
TaqI TCGA 2 cut(s) 160, 166
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 3 cut(s) 104, 107, 248
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 83, 209
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.