Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0018937

Physical Location & Seq

Genomic Coordinates Forward (+)

22204593 .. 22204946

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTGCAGGGATTCAGGGCTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGCAGGAAAGAGACAGGAATGGCAGTCTCAGAAGCAGTTACCTGTGCAAGTAGAGTTAGACCATGAGTTTCAATTCCATTCTATTTTTGTGTGTCCTGTGTCGAAGGAACAGTCGACTGAAGAAAATCCGCCTATGTTGATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTACGAAGATGTCAAAGAACGGGACAAAAGCTTTCAAGTGTCCATATTGTCCTTCCGACGTTGATTCAGCACAGTGCAGGCCACTCGTTAAGCTTGTAGAAACTAGTCATCCTGTGTCGCATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

8.58

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	49 - 90	7.7e-11	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018937)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g26950
rosa_laevigata	RLG00000019350
rosa_multiflora	Rmu_sc0004453.1_g000005 Rmu_sc0027036.1_g000003
rosa_rugosa	Rorug07G0234500.1
rosa_samantha	Rh4AG099700 Rh4AG100200 Rh7BG369000 Rh7CG483200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	125, 262
AhlI	ACTAGT	1 cut(s)	329
AluBI	AGCT	2 cut(s)	257, 319
AluI	AGCT	2 cut(s)	257, 319
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	58, 84
AoxI	GGCC	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Bbv12I	GWGCWC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BcoDI	GTCTC	2 cut(s)	58, 84
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	95
BsgI	GTGCAG	2 cut(s)	27, 322
BshFI	GGCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	58, 84
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	165, 300
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	23, 218, 305
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	58, 84
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	23, 218, 305
CviAII	CATG	3 cut(s)	116, 198, 206
CviJI	RGCY	4 cut(s)	21, 257, 307, 319
CviKI_1	RGCY	4 cut(s)	21, 257, 307, 319
DdeI	CTNAG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	3 cut(s)	119, 201, 209
FaiI	YATR	7 cut(s)	44, 117, 188, 199, 207, 271, 348
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	115, 197, 205
FblI	GTMKAC	1 cut(s)	167
FokI	GGATG	1 cut(s)	321
FspBI	CTAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	119, 201, 209
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	2 cut(s)	255, 317
HinfI	GANTC	2 cut(s)	13, 290
Hpy166II	GTNNAC	2 cut(s)	168, 203
Hpy188I	TCNGA	2 cut(s)	84, 283
Hpy8I	GTNNAC	2 cut(s)	168, 203
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	151, 288
HpyCH4III	ACNGT	2 cut(s)	165, 300
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	8, 100, 216, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	119, 201, 209
LpnPI	CCDG	6 cut(s)	2, 42, 53, 108, 162, 289
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	3 cut(s)	23, 185, 244
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	119, 201, 209
NspI	RCATGY	1 cut(s)	209
PciI	ACATGT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	13, 290
PscI	ACATGT	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	31, 97, 259, 288, 321, 353
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	165, 300
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	155, 167
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	13, 290
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	305
XceI	RCATGY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.