Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018937

Physical Location & Seq

Genomic Coordinates Forward (+)

21334414 .. 21334953

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTGAAATTCAGAAGCTCATGATATGTCTTCTATGGACTGGAAAGCTTGATAAGTCACCACACTGTCACCTATTATCCAAGGTCAATTGGGACAAAGTGACTGGGGAGCTAACCAGGCAATTCTGCAATATTCTTGGCCAGTCTTATGAGAGCCCATTGAGCATGACTATAGCTGTTGGGGTTCAGGGGTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGTAGGGAAGAGAAATGAATGGCAGACTATGAAGCAGTTGCCTGTGCCAGTGGAGTTAGACTGTGAGTTTCAGTTCTATTCTATTTTTGTTTGTCCAGTCTCCAAGGAACAAGCAACCGAAGAAAATCCACCTATGTTGATGTCATGTGGAGATGTGCTTTGCAAGCAGTCTATTAAAGGATATCAAAGAATGGCACAAAAACCTTCAAATGTCCTTACTGTCCTTCCAATATTGATTCAGCACAGTGTAGGCATCTCTTTTTCTGATGTATTTCCAAAATCTAGCTGCAACACTCTTACCCGAACTTGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

179

Amino Acids

20.16

Weight (kDa)

8.36

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	1 - 66	6.8e-11	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018937)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g26950
rosa_laevigata	RLG00000019350
rosa_multiflora	Rmu_sc0004453.1_g000005 Rmu_sc0027036.1_g000003
rosa_rugosa	Rorug07G0234500.1
rosa_samantha	Rh4AG099700 Rh4AG100200 Rh7BG369000 Rh7CG483200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	5 cut(s)	19, 49, 112, 176, 510
AluI	AGCT	5 cut(s)	19, 49, 112, 176, 510
Alw26I	GTCTC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	51, 62
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	81, 327
Bse1I	ACTGG	5 cut(s)	46, 109, 142, 272, 320
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	81, 327
BseNI	ACTGG	5 cut(s)	46, 109, 142, 272, 320
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	21
BsrI	ACTGG	5 cut(s)	46, 109, 142, 272, 320
BssECI	CCNNGG	2 cut(s)	81, 327
BssT1I	CCWWGG	2 cut(s)	81, 327
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	4 cut(s)	68, 287, 445, 470
Bst6I	CTCTTC	2 cut(s)	207, 227
BstC8I	GCNNGC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 162, 388
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	64, 279, 475
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	3 cut(s)	22, 166, 369
CviJI	RGCY	8 cut(s)	5, 19, 49, 112, 141, 156, 176, 510
CviKI_1	RGCY	8 cut(s)	5, 19, 49, 112, 141, 156, 176, 510
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	207, 227
EarI	CTCTTC	2 cut(s)	207, 227
Eco130I	CCWWGG	2 cut(s)	81, 327
Eco24I	GRGCYC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	81, 327
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	2 cut(s)	81, 327
FaeI	CATG	3 cut(s)	25, 169, 372
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	21, 165, 368
Fnu4HI	GCNGC	1 cut(s)	511
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	25, 169, 372
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	460
HphI	GGTGA	2 cut(s)	51, 62
Hpy188I	TCNGA	2 cut(s)	15, 490
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	438, 458
HpyCH4III	ACNGT	4 cut(s)	68, 287, 445, 470
HpyCH4V	TGCA	3 cut(s)	129, 387, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 162, 388
Hsp92II	CATG	3 cut(s)	25, 169, 372
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	27, 90, 103, 130, 155, 173, 279, 285, 333
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	57, 68, 100
MboII	GAAGA	4 cut(s)	23, 194, 244, 356
MfeI	CAATTG	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	3 cut(s)	9, 88, 122
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	1 cut(s)	210
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	118, 162, 388
NlaIII	CATG	3 cut(s)	25, 169, 372
NmuCI	GTSAC	3 cut(s)	57, 68, 100
PagI	TCATGA	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	9, 88, 122
SspI	AATATT	2 cut(s)	133, 456
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	81, 327
TaaI	ACNGT	4 cut(s)	68, 287, 445, 470
TasI	AATT	3 cut(s)	9, 88, 122
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	71, 279, 475
TseFI	GTSAC	3 cut(s)	57, 68, 100
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	3 cut(s)	57, 68, 100
TspDTI	ATGAA	3 cut(s)	230, 255, 269
TspRI	CASTG	3 cut(s)	71, 279, 475
XapI	RAATTY	1 cut(s)	9
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.