Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018937

Physical Location & Seq

Genomic Coordinates Reverse (-)

50646780 .. 50647330

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATATGTCTTCTATGGAGTGGAAAGCTTGATAAGTCACCATATTGTCACCTATTATCCAAGGCCATCTGGGACAAAGTGACTAGGGAGCTAACCAGGCAATTCTGCAATATTCTTGGCCAGTCTTACGAGAGCCCATTGAGCATGACTATAGCTATTGGGGTTCAGGGGTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGTAGGGAAGAGAAATGAATGGCAGACTATGAAGCAGTTGCTTGTGCCAGTGGAGTTAGACCGTGAGTTTCAGTTCCATTATTTTTGTTTGTCCAGTCTCCAAAGAACAAGTGACCGAAGAAAATCCACCTATGTTGATGTCATCTTGATATGTGCTTTGACTATTGACAGAGGAATTGACACAATATTTGAGTTTCAGTATAACAAGGTATTGCTTCCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

143

Amino Acids

16.54

Weight (kDa)

8.85

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	1 - 59	2.7e-09	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018937)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g26950
rosa_laevigata	RLG00000019350
rosa_multiflora	Rmu_sc0004453.1_g000005 Rmu_sc0027036.1_g000003
rosa_rugosa	Rorug07G0234500.1
rosa_samantha	Rh4AG099700 Rh4AG100200 Rh7BG369000 Rh7CG483200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	28, 91, 155
AluI	AGCT	3 cut(s)	28, 91, 155
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	63, 118
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AsuHPI	GGTGA	2 cut(s)	30, 41
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	2
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	2
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	3 cut(s)	121, 251, 297
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	121, 251, 297
BshFI	GGCC	2 cut(s)	65, 120
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	65, 120
Bsp1286I	GDGCHC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	65, 120
BsrI	ACTGG	3 cut(s)	121, 251, 297
BssECI	CCNNGG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	186, 206
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 141
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	2
BsuRI	GGCC	2 cut(s)	65, 120
BtsIMutI	CAGTG	1 cut(s)	258
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	6 cut(s)	28, 65, 91, 120, 135, 155
CviKI_1	RGCY	6 cut(s)	28, 65, 91, 120, 135, 155
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	186, 206
EarI	CTCTTC	2 cut(s)	186, 206
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	148
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	65, 120
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	26
HphI	GGTGA	2 cut(s)	30, 41
Hpy188III	TCNNGA	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 141
Hsp92II	CATG	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	55, 82, 109, 134, 152, 264, 310
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	4 cut(s)	36, 47, 79, 314
MboII	GAAGA	3 cut(s)	173, 223, 333
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	101, 378
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	2 cut(s)	189, 368
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	97, 141
NlaIII	CATG	1 cut(s)	148
NmuCI	GTSAC	4 cut(s)	36, 47, 79, 314
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	7 cut(s)	30, 54, 93, 157, 181, 335, 414
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	101, 378
SspI	AATATT	2 cut(s)	112, 390
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	266
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	101, 378
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	4 cut(s)	36, 47, 79, 314
Tsp45I	GTSAC	4 cut(s)	36, 47, 79, 314
TspDTI	ATGAA	3 cut(s)	209, 234, 248
TspRI	CASTG	1 cut(s)	258
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.