Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004453.1

Orthogroup ID

OG0018937

Physical Location & Seq

Genomic Coordinates Reverse (-)

22607 .. 22918

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004453.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgactatagctgttagggttcaagggctgccacctgttctcaagtttatgaatgtaatggtagggaagagaaatgaatggcagactatgaagcagttgcttgtgccagtgaagttagaccgtgagtttcagttccattctatttttgtttgtctagtctccaaggaacaagcaactgaagaaaatccacctatgttgatgtcatctggacatgtgctttgcaagcagtctatttcaaaggtgtcaaagaacggcactaaaaccttcaaatgtccttactgtcctttcgatatcgattccaggacagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

103

Amino Acids

11.75

Weight (kDa)

9.39

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018937)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g26950
rosa_laevigata	RLG00000019350
rosa_multiflora	Rmu_sc0004453.1_g000005 Rmu_sc0027036.1_g000003
rosa_rugosa	Rorug07G0234500.1
rosa_samantha	Rh4AG099700 Rh4AG100200 Rh7BG369000 Rh7CG483200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	23, 237, 268
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
BbvI	GCAGC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	122, 281, 307
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	114, 312
Cac8I	GCNNGC	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	2 cut(s)	11, 28
CviKI_1	RGCY	2 cut(s)	11, 28
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	8, 50, 89, 194, 213
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	122, 281, 307
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	215
LpnPI	CCDG	4 cut(s)	48, 120, 192, 286
Lsp1109I	GCAGC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	155
MboII	GAAGA	2 cut(s)	79, 191
MspR9I	CCNGG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	215
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
SatI	GCNGC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	301
SetI	ASST	5 cut(s)	13, 37, 193, 243, 266
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	122, 281, 307
TaqI	TCGA	2 cut(s)	288, 294
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	2 cut(s)	114, 312
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	65, 90, 104
TspRI	CASTG	2 cut(s)	114, 312
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.