pycom15g31920

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019227
Physical Location & Seq
Forward (+)
30664531 .. 30665886
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGATGGGGAAGTTCTTCAGTGGAGTAAAGTTACAACGTCCATTTACAACCTTATCTTGGGAAAGCTTTACTGTGATCGATACTAACTATGGGACAATGCGATTACAAGGAAAGCATGAATATTCATGTAAGCTGAAATTTAAGGAGCAGTCTATCATTGACCGAAATCCCCACCAGGTACATGGTATAGTTCAAGATAAGAATGGGAAAACGGCTGCAACAATGTTTGGCAAATGGGATGAGAGCATGCACTACGTTTTAGGAGACTGTTCAGGGAAGGGAAAAGGATCCGACTCTTTATCTGACTCCCGCCTGCTCTGGAGGAGGAACAAGCCGCCCAAGTTTCCAACTAGATACAACTTAACTCGCTTTGCCATCACAATGAATGAACTCACACCTGGACTGAAGGAGAAGTTGCCCCCAACAGATTCAAGGCTCAGACCCGATCAAAGGTATTTGGAAAATGGGGAGTATGAAATGGCAAATGCAGAGAAGTTGAGGCTAGAACAGAGACAACGGCAGGCACGAAAGATGCAAGAGCAGGGTTGGAAACCGCAGTGGTTTGCAAAGGATAAAGGAAGCGACACATACAGCTACACCGGTGGATATTGGGAGGCAAGGGAACAAGGAAACTGGGACTCATGTCCTGACATTTTTGGCCAAGTCCCTTGTGAACCGCAACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

230

Amino Acids

26.67

Weight (kDa)

9.16

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 29 - 208 1.3e-52 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019227)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
pyrus_communis pycom15g31920
rosa_multiflora Rmu_sc0004638.1_g000007
rosa_roxburghii Rroxscaffold_3G00239530
rosa_samantha Rh7DG347500
rosa_wichuraiana Rw7G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 310, 335, 554, 677
AclWI GGATC 2 cut(s) 282, 295
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 57, 450
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 2 cut(s) 194, 432
AjnI CCWGG 2 cut(s) 174, 397
AluBI AGCT 3 cut(s) 66, 133, 594
AluI AGCT 3 cut(s) 66, 133, 594
Alw26I GTCTC 2 cut(s) 258, 505
AlwI GGATC 2 cut(s) 282, 295
AoxI GGCC 1 cut(s) 658
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 137
AsiGI ACCGGT 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 660
BamHI GGATCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 228, 533
BciT130I CCWGG 2 cut(s) 176, 399
BcoDI GTCTC 2 cut(s) 258, 505
BfaI CTAG 2 cut(s) 351, 503
BisI GCNGC 2 cut(s) 216, 335
BlsI GCNGC 2 cut(s) 217, 336
Bme1390I CCNGG 2 cut(s) 176, 399
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 176, 399
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 643
BoxI GACNNNNGTC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 450
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 1 cut(s) 638
BseBI CCWGG 2 cut(s) 176, 399
BseCI ATCGAT 1 cut(s) 78
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 57, 450
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 660
BshTI ACCGGT 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 1 cut(s) 600
BslFI GGGAC 3 cut(s) 106, 650, 650
BslI CCNNNNNNNGG 2 cut(s) 57, 450
BsmAI GTCTC 2 cut(s) 258, 505
BsmFI GGGAC 3 cut(s) 106, 650, 650
BsnI GGCC 1 cut(s) 660
Bsp143I GATC 3 cut(s) 75, 287, 445
BspACI CCGC 4 cut(s) 310, 335, 554, 677
BspANI GGCC 1 cut(s) 660
BspCNI CTCAG 1 cut(s) 450
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 282, 295
BsrFI RCCGGY 1 cut(s) 599
BsrI ACTGG 1 cut(s) 638
BssAI RCCGGY 1 cut(s) 599
BssMI GATC 3 cut(s) 75, 287, 445
Bst2UI CCWGG 2 cut(s) 176, 399
Bst4CI ACNGT 2 cut(s) 73, 269
BstC8I GCNNGC 3 cut(s) 248, 314, 522
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 78, 290, 448
BstMAI GTCTC 2 cut(s) 258, 505
BstMBI GATC 3 cut(s) 75, 287, 445
BstNI CCWGG 2 cut(s) 176, 399
BstNSI RCATGY 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 642
BstSCI CCNGG 2 cut(s) 174, 397
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 287
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 287
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 660
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 25, 563
Cac8I GCNNGC 3 cut(s) 248, 314, 522
Cfr10I RCCGGY 1 cut(s) 599
ClaI ATCGAT 1 cut(s) 78
CsiI ACCWGGT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 599
CviAII CATG 5 cut(s) 116, 126, 182, 247, 642
CviJI RGCY 8 cut(s) 66, 133, 215, 334, 436, 502, 594, 660
CviKI_1 RGCY 8 cut(s) 66, 133, 215, 334, 436, 502, 594, 660
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 77, 289, 447
DpnII GATC 3 cut(s) 75, 287, 445
EaeI YGGCCR 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 174, 397
FaeI CATG 5 cut(s) 119, 129, 185, 250, 645
FaiI YATR 9 cut(s) 90, 117, 127, 183, 188, 248, 474, 589, 643
FaqI GGGAC 3 cut(s) 106, 650, 650
FatI CATG 5 cut(s) 115, 125, 181, 246, 641
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 216, 335
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 216, 335
FspBI CTAG 2 cut(s) 351, 503
GluI GCNGC 2 cut(s) 216, 335
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 660
HapII CCGG 1 cut(s) 600
Hin1II CATG 5 cut(s) 119, 129, 185, 250, 645
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 4 cut(s) 293, 305, 428, 638
HpaII CCGG 1 cut(s) 600
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 3 cut(s) 292, 304, 440
Hpy188III TCNNGA 3 cut(s) 194, 319, 647
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 271, 400
HpyCH4III ACNGT 2 cut(s) 73, 269
HpyCH4IV ACGT 2 cut(s) 37, 255
HpyCH4V TGCA 5 cut(s) 218, 250, 488, 535, 566
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 2 cut(s) 37, 255
Hsp92II CATG 5 cut(s) 119, 129, 185, 250, 645
Kzo9I GATC 3 cut(s) 75, 287, 445
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 522
MabI ACCWGGT 1 cut(s) 174
MaeI CTAG 2 cut(s) 351, 503
MaeII ACGT 2 cut(s) 37, 255
MaeIII GTNAC 1 cut(s) 30
MalI GATC 3 cut(s) 77, 289, 447
MboI GATC 3 cut(s) 75, 287, 445
MboII GAAGA 1 cut(s) 7
MflI RGATCY 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 3 cut(s) 287, 299, 632
MmeI TCCRAC 3 cut(s) 315, 371, 527
MnlI CCTC 4 cut(s) 315, 318, 492, 607
Mox20I TGGCCA 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 660
MseI TTAA 2 cut(s) 141, 362
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 660
MspI CCGG 1 cut(s) 600
MspR9I CCNGG 2 cut(s) 176, 399
MvaI CCWGG 2 cut(s) 176, 399
NdeII GATC 3 cut(s) 75, 287, 445
NlaIII CATG 5 cut(s) 119, 129, 185, 250, 645
NlaIV GGNNCC 1 cut(s) 289
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 428
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 2 cut(s) 217, 336
PleI GAGTC 3 cut(s) 287, 299, 632
PpsI GAGTC 3 cut(s) 287, 299, 632
PshAI GACNNNNGTC 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 174, 397
PspGI CCWGG 2 cut(s) 174, 397
PspN4I GGNNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 141, 362
SatI GCNGC 2 cut(s) 216, 335
Sau3AI GATC 3 cut(s) 75, 287, 445
SchI GAGTC 3 cut(s) 287, 299, 632
ScrFI CCNGG 2 cut(s) 176, 399
SetI ASST 9 cut(s) 40, 53, 68, 135, 180, 258, 400, 455, 596
SexAI ACCWGGT 1 cut(s) 174
SfaNI GCATC 1 cut(s) 522
SgrAI CRCCGGYG 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 380
SphI GCATGC 1 cut(s) 250
Sse9I AATT 1 cut(s) 137
SsiI CCGC 4 cut(s) 310, 335, 554, 677
SspI AATATT 1 cut(s) 122
SspMI CTAG 2 cut(s) 351, 503
StyD4I CCNGG 2 cut(s) 174, 397
TaaI ACNGT 2 cut(s) 73, 269
TaiI ACGT 2 cut(s) 40, 258
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 177
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 141, 362
Tru9I TTAA 2 cut(s) 141, 362
TscAI CASTG 2 cut(s) 25, 563
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 5 cut(s) 114, 132, 398, 402, 489
TspRI CASTG 2 cut(s) 25, 563
XapI RAATTY 1 cut(s) 137
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 351, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.