Rh7DG347500

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019227
Physical Location & Seq
Forward (+)
45987147 .. 45987797
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG347500.1

Sequence Viewer

Length: 474 bp
ATGTTGATGGGGAAGTGGGATGAGGCAATGTACTATGTTCTAGGAGATCCAACTACAAAACCAAAGGGTTATGATCCAATGACGGAGGCTGTGCTGCTCTGGGAAAGGGAAAACTACGTTACTAAGACAAGATATAATTTCTCTCCTTTTGCAATATCCCTGAATGAATTAACACCTGGACTATTGGAGAAATTGCCTCCAACAGACTCGAGGCTGAGGCCAGATCAAAGACATTTAGAAAATGGTGAATATGAATTGGCAAATGCAGAAAAACTAAGACTTGAACAGCTACAGAGACAGGCGAGGAAGTTGCAAGAGAGGGGCTGGCAGCCAAGATGGTTTCAAAGAGATGAGGACGGTTGTTATAATTACACAGGTGGGTATTGGGAAACTAGGGAGAAAAACAATTGGGATGGAATTCCTGATATTTTTGGCCAGAGTAGTGATACGCCCTCAAGTTCTGTTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

157

Amino Acids

18.52

Weight (kDa)

4.9

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 2 - 133 2.3e-37 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019227)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
pyrus_communis pycom15g31920
rosa_multiflora Rmu_sc0004638.1_g000007
rosa_roxburghii Rroxscaffold_3G00239530
rosa_samantha Rh7DG347500
rosa_wichuraiana Rw7G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AclWI GGATC 2 cut(s) 41, 68
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 417
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 3 cut(s) 284, 344, 467
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 41, 68
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 218, 433
ApeKI GCWGC 2 cut(s) 94, 328
ApoI RAATTY 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 208
BalI TGGCCA 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 81, 340
BccI CCATC 2 cut(s) 330, 407
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 2 cut(s) 41, 393
BfmI CTRYAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 95, 329
BlsI GCNGC 2 cut(s) 96, 330
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 25, 418
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 81, 340
BshFI GGCC 2 cut(s) 220, 435
BsiHKCI CYCGRG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 2 cut(s) 220, 435
BsoBI CYCGRG 1 cut(s) 208
Bsp143I GATC 3 cut(s) 46, 73, 223
BspANI GGCC 2 cut(s) 220, 435
BspCNI CTCAG 1 cut(s) 207
BspPI GGATC 2 cut(s) 41, 68
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 3 cut(s) 46, 73, 223
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 123, 215, 275
BstF5I GGATG 2 cut(s) 25, 418
BstKTI GATC 3 cut(s) 49, 76, 226
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 3 cut(s) 46, 73, 223
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 81, 340
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 2 cut(s) 220, 435
BtsCI GGATG 2 cut(s) 25, 418
Cac8I GCNNGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 7 cut(s) 89, 214, 220, 289, 324, 331, 435
CviKI_1 RGCY 7 cut(s) 89, 214, 220, 289, 324, 331, 435
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 123, 215, 275
DpnI GATC 3 cut(s) 48, 75, 225
DpnII GATC 3 cut(s) 46, 73, 223
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 175
FaiI YATR 5 cut(s) 36, 72, 135, 252, 366
Fnu4HI GCNGC 2 cut(s) 95, 329
FokI GGATG 2 cut(s) 32, 425
Fsp4HI GCNGC 2 cut(s) 95, 329
FspBI CTAG 2 cut(s) 41, 393
GluI GCNGC 2 cut(s) 95, 329
HaeIII GGCC 2 cut(s) 220, 435
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 152, 266, 313
HpyF3I CTNAG 3 cut(s) 123, 215, 275
HpySE526I ACGT 1 cut(s) 117
Kzo9I GATC 3 cut(s) 46, 73, 223
Lsp1109I GCAGC 2 cut(s) 81, 340
MaeI CTAG 2 cut(s) 41, 393
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 48, 75, 225
MboI GATC 3 cut(s) 46, 73, 223
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 7 cut(s) 136, 167, 191, 254, 367, 406, 417
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 74, 224
MnlI CCTC 9 cut(s) 16, 79, 204, 207, 210, 297, 312, 346, 463
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 177
NdeII GATC 3 cut(s) 46, 73, 223
PaeR7I CTCGAG 1 cut(s) 208
PkrI GCNGC 2 cut(s) 96, 330
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 208
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 95, 329
Sau3AI GATC 3 cut(s) 46, 73, 223
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 177
SetI ASST 4 cut(s) 120, 178, 291, 379
SfcI CTRYAG 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 208, 454
SmoI CTYRAG 2 cut(s) 208, 454
Sse9I AATT 7 cut(s) 136, 167, 191, 254, 367, 406, 417
SspMI CTAG 2 cut(s) 41, 393
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 209
TasI AATT 7 cut(s) 136, 167, 191, 254, 367, 406, 417
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseI GCWGC 2 cut(s) 94, 328
TspDTI ATGAA 2 cut(s) 180, 267
TspGWI ACGGA 1 cut(s) 98
XapI RAATTY 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 2 cut(s) 41, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.