Rmu_sc0004638.1_g000007

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004638.1
OG0019227
Physical Location & Seq
Forward (+)
23865 .. 25982
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004638.1_g000007.1.cds

Sequence Viewer

Length: 1107 bp
atgaacccgctgtgctgcattgctccggtttcgatcgttcgggaccaggccgacccggtcacggcgaaacagtccggtcactaccagctcggcctcgacgcggcggttccggttcgaaacgtcagctacggctcgaagccgagctactctgctcaggtctcgtcggcggggaccgaatcggacagagcctcgtccgccgcggcgcaacgcgaggttgaggaagcgttctgcgagccgagagattcgaaggtgttcggcgtcagtggaggcgtcgccggaattctgtacaagtgggtgaactacggcaaggggtggaggtcgaggtggtttctgctggaagacggcgtgctttcgtattacaaggttcatggaccggacaagattctgatgagcccggccagagacaaaggcgtgacggtgatcggagaggactcgttgaggtatatgaagaaggctaattggaatagaaatcggcttggcttgccggcgaggaggccgtgcaagcctttcggcaaagtgcatttgaaggtctcttcaattcgtgccagcaaatcagatgataaaaggctttccatattcacaggaactaaaactcttcacttgtgttgtttatctagagaggacagggtagcaatgttgatggggaagtgggatgaggcaatgtactatgttctaggagatccaactacaaaaccaaagggttatgatcgaatgacggaggctgtgctgctctgggaaagggaaaactacgttactaagacaagatataatttctctccttttgcaatatccctgaatgaattaacacctggactattggagaaattgcctccaacagactcgaggctgaggccagatcaaagacatttagaaaatggtgaatatgaattggcaaatgcagaaaaactaagacttgaacagctacagagacaggcgaggaagttgcaagagaggggctggcagccaagatggtttcaaagagatgaggacggttgttataattacacaggtgggtattgggaaactagggagaaaaacaattgggatggaattcctgatatttttggccagagtagtgatacgccctcaagttctggtgaagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

368

Amino Acids

41.74

Weight (kDa)

8.89

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019227)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
pyrus_communis pycom15g31920
rosa_multiflora Rmu_sc0004638.1_g000007
rosa_roxburghii Rroxscaffold_3G00239530
rosa_samantha Rh7DG347500
rosa_wichuraiana Rw7G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccII CGCG 3 cut(s) 101, 200, 210
AciI CCGC 7 cut(s) 8, 101, 104, 167, 195, 198, 200
AclWI GGATC 1 cut(s) 674
AcoI YGGCCR 2 cut(s) 396, 1066
AcsI RAATTY 2 cut(s) 279, 1050
AcyI GRCGYC 2 cut(s) 258, 270
AfaI GTAC 2 cut(s) 287, 665
AfiI CCNNNNNNNGG 2 cut(s) 61, 100
AgsI TTSAA 4 cut(s) 526, 537, 917, 977
AjnI CCWGG 2 cut(s) 45, 808
AluBI AGCT 4 cut(s) 88, 126, 144, 922
AluI AGCT 4 cut(s) 88, 126, 144, 922
Alw26I GTCTC 4 cut(s) 163, 396, 535, 922
AlwI GGATC 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 6 cut(s) 48, 91, 396, 494, 851, 1066
ApeKI GCWGC 3 cut(s) 15, 727, 961
ApoI RAATTY 2 cut(s) 279, 1050
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 43, 171, 371
AsuC2I CCSGG 2 cut(s) 56, 395
AsuHPI GGTGA 3 cut(s) 307, 430, 890
AsuII TTCGAA 2 cut(s) 115, 245
AvaI CYCGRG 1 cut(s) 841
AvaII GGWCC 3 cut(s) 43, 171, 371
BalI TGGCCA 1 cut(s) 1068
BanII GRGCYC 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 848
BbvI GCAGC 3 cut(s) 2, 714, 973
BccI CCATC 3 cut(s) 634, 963, 1040
BceAI ACGGC 5 cut(s) 78, 145, 319, 358, 481
BcgI CGANNNNNNTGC 4 cut(s) 490, 524, 925, 959
BciT130I CCWGG 2 cut(s) 47, 810
BcnI CCSGG 2 cut(s) 56, 395
BcoDI GTCTC 4 cut(s) 163, 396, 535, 922
BfaI CTAG 3 cut(s) 615, 674, 1026
BfmI CTRYAG 1 cut(s) 923
BisI GCNGC 6 cut(s) 16, 102, 198, 201, 728, 962
BlsI GCNGC 6 cut(s) 17, 103, 199, 202, 729, 963
Bme1390I CCNGG 4 cut(s) 47, 56, 395, 810
Bme18I GGWCC 3 cut(s) 43, 171, 371
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 3 cut(s) 43, 171, 371
BmiI GGNNCC 3 cut(s) 44, 108, 172
BmrFI CCNGG 4 cut(s) 47, 56, 395, 810
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 153, 848
Bpu14I TTCGAA 2 cut(s) 115, 245
BpuEI CTTGAG 1 cut(s) 1072
BpuMI CCSGG 2 cut(s) 56, 395
BsaHI GRCGYC 2 cut(s) 258, 270
BsaI GGTCTC 2 cut(s) 163, 535
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 4 cut(s) 25, 74, 109, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 100
Bse118I RCCGGY 1 cut(s) 484
Bse3DI GCAATG 3 cut(s) 18, 639, 666
BseBI CCWGG 2 cut(s) 47, 810
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 658, 1051
BseLI CCNNNNNNNGG 2 cut(s) 61, 100
BseMI GCAATG 3 cut(s) 18, 639, 666
BseMII CTCAG 2 cut(s) 167, 839
BseRI GAGGAG 1 cut(s) 505
BseXI GCAGC 3 cut(s) 2, 714, 973
Bsh1236I CGCG 3 cut(s) 101, 200, 210
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 6 cut(s) 50, 93, 398, 496, 853, 1068
BsiEI CGRYCG 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 8 cut(s) 26, 56, 75, 110, 276, 374, 395, 485
BslFI GGGAC 2 cut(s) 56, 184
BslI CCNNNNNNNGG 2 cut(s) 61, 100
BsmAI GTCTC 4 cut(s) 163, 396, 535, 922
BsmFI GGGAC 2 cut(s) 56, 184
BsnI GGCC 6 cut(s) 50, 93, 398, 496, 853, 1068
Bso31I GGTCTC 2 cut(s) 163, 535
BsoBI CYCGRG 1 cut(s) 841
Bsp119I TTCGAA 2 cut(s) 115, 245
Bsp1286I GDGCHC 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 5 cut(s) 33, 420, 679, 706, 856
BspACI CCGC 7 cut(s) 8, 101, 104, 167, 195, 198, 200
BspANI GGCC 6 cut(s) 50, 93, 398, 496, 853, 1068
BspCNI CTCAG 2 cut(s) 166, 840
BspFNI CGCG 3 cut(s) 101, 200, 210
BspLI GGNNCC 3 cut(s) 44, 108, 172
BspPI GGATC 1 cut(s) 674
BspT104I TTCGAA 2 cut(s) 115, 245
BspTNI GGTCTC 2 cut(s) 163, 535
BsrDI GCAATG 3 cut(s) 18, 639, 666
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 33, 420, 679, 706, 856
BssNI GRCGYC 2 cut(s) 258, 270
Bst2UI CCWGG 2 cut(s) 47, 810
Bst4CI ACNGT 3 cut(s) 72, 418, 992
Bst6I CTCTTC 3 cut(s) 538, 600, 1095
BstACI GRCGYC 2 cut(s) 258, 270
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 2 cut(s) 115, 245
BstC8I GCNNGC 7 cut(s) 233, 347, 482, 486, 503, 547, 959
BstDEI CTNAG 4 cut(s) 153, 756, 848, 908
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 658, 1051
BstFNI CGCG 3 cut(s) 101, 200, 210
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 5 cut(s) 36, 423, 682, 709, 859
BstMAI GTCTC 4 cut(s) 163, 396, 535, 922
BstMBI GATC 5 cut(s) 33, 420, 679, 706, 856
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 194, 481, 502
BstNI CCWGG 2 cut(s) 47, 810
BstSCI CCNGG 4 cut(s) 45, 54, 393, 808
BstSFI CTRYAG 1 cut(s) 923
BstUI CGCG 3 cut(s) 101, 200, 210
BstV1I GCAGC 3 cut(s) 2, 714, 973
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 6 cut(s) 50, 93, 398, 496, 853, 1068
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 658, 1051
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 7 cut(s) 233, 347, 482, 486, 503, 547, 959
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 3 cut(s) 43, 171, 371
Cfr42I CCGCGG 1 cut(s) 201
CseI GACGC 3 cut(s) 107, 247, 259
Csp6I GTAC 2 cut(s) 286, 664
CviAII CATG 1 cut(s) 368
CviQI GTAC 2 cut(s) 286, 664
DdeI CTNAG 4 cut(s) 153, 756, 848, 908
DpnI GATC 5 cut(s) 35, 422, 681, 708, 858
DpnII GATC 5 cut(s) 33, 420, 679, 706, 856
EaeI YGGCCR 2 cut(s) 396, 1066
Eam1104I CTCTTC 3 cut(s) 538, 600, 1095
EarI CTCTTC 3 cut(s) 538, 600, 1095
EciI GGCGGA 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 2 cut(s) 163, 535
Eco47I GGWCC 3 cut(s) 43, 171, 371
Eco88I CYCGRG 1 cut(s) 841
EcoRI GAATTC 2 cut(s) 279, 1050
EcoRII CCWGG 2 cut(s) 45, 808
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 1 cut(s) 371
FaiI YATR 9 cut(s) 369, 444, 446, 575, 669, 705, 768, 885, 999
FaqI GGGAC 2 cut(s) 56, 184
FatI CATG 1 cut(s) 367
FauI CCCGC 2 cut(s) 15, 160
Fnu4HI GCNGC 6 cut(s) 16, 102, 198, 201, 728, 962
FokI GGATG 2 cut(s) 665, 1058
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 6 cut(s) 16, 102, 198, 201, 728, 962
FspBI CTAG 3 cut(s) 615, 674, 1026
GlaI GCGC 1 cut(s) 204
GluI GCNGC 6 cut(s) 16, 102, 198, 201, 728, 962
HaeIII GGCC 6 cut(s) 50, 93, 398, 496, 853, 1068
HapII CCGG 8 cut(s) 26, 56, 75, 110, 276, 374, 395, 485
HgaI GACGC 3 cut(s) 107, 247, 259
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 2 cut(s) 258, 270
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 5 cut(s) 176, 242, 382, 431, 839
HpaII CCGG 8 cut(s) 26, 56, 75, 110, 276, 374, 395, 485
HphI GGTGA 3 cut(s) 307, 430, 890
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 4 cut(s) 181, 387, 425, 556
Hpy188III TCNNGA 3 cut(s) 41, 615, 1055
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 3 cut(s) 101, 166, 275
HpyAV CCTTC 3 cut(s) 241, 445, 520
HpyCH4III ACNGT 3 cut(s) 72, 418, 992
HpyCH4IV ACGT 2 cut(s) 120, 750
HpyCH4V TGCA 6 cut(s) 18, 501, 520, 785, 899, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 481, 502
HpyF3I CTNAG 4 cut(s) 153, 756, 848, 908
HpySE526I ACGT 2 cut(s) 120, 750
Hsp92I GRCGYC 2 cut(s) 258, 270
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 5 cut(s) 33, 420, 679, 706, 856
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 2, 714, 973
MaeI CTAG 3 cut(s) 615, 674, 1026
MaeII ACGT 2 cut(s) 120, 750
MaeIII GTNAC 4 cut(s) 58, 77, 412, 751
MalI GATC 5 cut(s) 35, 422, 681, 708, 858
MboI GATC 5 cut(s) 33, 420, 679, 706, 856
MboII GAAGA 4 cut(s) 350, 460, 525, 587
MfeI CAATTG 1 cut(s) 1039
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 1068
MluNI TGGCCA 1 cut(s) 1068
MlyI GAGTC 2 cut(s) 425, 833
MmeI TCCRAC 2 cut(s) 707, 857
Mox20I TGGCCA 1 cut(s) 1068
MroNI GCCGGC 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 251
MscI TGGCCA 1 cut(s) 1068
MseI TTAA 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 1068
MspA1I CMGCKG 2 cut(s) 10, 200
MspI CCGG 8 cut(s) 26, 56, 75, 110, 276, 374, 395, 485
MspR9I CCNGG 4 cut(s) 47, 56, 395, 810
MunI CAATTG 1 cut(s) 1039
MvaI CCWGG 2 cut(s) 47, 810
MvnI CGCG 3 cut(s) 101, 200, 210
MwoI GCNNNNNNNGC 3 cut(s) 194, 481, 502
NaeI GCCGGC 1 cut(s) 486
NciI CCSGG 2 cut(s) 56, 395
NdeII GATC 5 cut(s) 33, 420, 679, 706, 856
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 3 cut(s) 44, 108, 172
NmeAIII GCCGAG 3 cut(s) 69, 165, 261
NmuCI GTSAC 3 cut(s) 58, 77, 412
NspV TTCGAA 2 cut(s) 115, 245
PaeR7I CTCGAG 1 cut(s) 841
PdiI GCCGGC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 176, 242, 382
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 6 cut(s) 17, 103, 199, 202, 729, 963
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 2 cut(s) 425, 833
PpsI GAGTC 2 cut(s) 425, 833
PsiI TTATAA 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 45, 808
PspGI CCWGG 2 cut(s) 45, 808
PspN4I GGNNCC 3 cut(s) 44, 108, 172
PspPI GGNCC 3 cut(s) 43, 171, 371
PspXI VCTCGAGB 1 cut(s) 841
PsuI RGATCY 1 cut(s) 679
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 2 cut(s) 287, 665
RsaNI GTAC 2 cut(s) 286, 664
SacII CCGCGG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 803
SatI GCNGC 6 cut(s) 16, 102, 198, 201, 728, 962
Sau3AI GATC 5 cut(s) 33, 420, 679, 706, 856
Sau96I GGNCC 3 cut(s) 43, 171, 371
SchI GAGTC 2 cut(s) 425, 833
ScrFI CCNGG 4 cut(s) 47, 56, 395, 810
SduI GDGCHC 1 cut(s) 395
SfcI CTRYAG 1 cut(s) 923
Sfr274I CTCGAG 1 cut(s) 841
Sfr303I CCGCGG 1 cut(s) 201
SfuI TTCGAA 2 cut(s) 115, 245
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 3 cut(s) 43, 171, 371
SlaI CTCGAG 1 cut(s) 841
SmlI CTYRAG 2 cut(s) 841, 1087
SmoI CTYRAG 2 cut(s) 841, 1087
SsiI CCGC 7 cut(s) 8, 101, 104, 167, 195, 198, 200
SspMI CTAG 3 cut(s) 615, 674, 1026
StyD4I CCNGG 4 cut(s) 45, 54, 393, 808
TaaI ACNGT 3 cut(s) 72, 418, 992
TaiI ACGT 2 cut(s) 123, 753
TaqI TCGA 8 cut(s) 32, 96, 115, 134, 245, 320, 709, 842
TaqII GACCGA 1 cut(s) 188
TatI WGTACW 2 cut(s) 285, 663
TauI GCSGC 3 cut(s) 104, 200, 203
TfiI GAWTC 3 cut(s) 176, 242, 382
Tru1I TTAA 1 cut(s) 803
Tru9I TTAA 1 cut(s) 803
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 3 cut(s) 58, 77, 412
TseI GCWGC 3 cut(s) 15, 727, 961
Tsp45I GTSAC 3 cut(s) 58, 77, 412
TspDTI ATGAA 5 cut(s) 17, 356, 461, 813, 900
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 43, 171, 371
XapI RAATTY 2 cut(s) 279, 1050
XbaI TCTAGA 1 cut(s) 614
XhoI CTCGAG 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 3 cut(s) 615, 674, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.