Rw7G029950

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019227
Physical Location & Seq
Forward (+)
42088023 .. 42089512
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029950.1

Sequence Viewer

Length: 600 bp
ATGCGCATCAAGGGAAGTGGAAATTACTCATGTAAGCTAAAGTTCAAGGAGCAGTCTATCATAGACCGAAACCCACATCAGGTTCATGGATTTGTTCAAGACAATCGAACTGGAGAGAAAGTAGCAGTGTTGATGGGGAAGTGGGATGAGGCAATGTACTATGTTCTAGGAGATCCAACTACAAAACCAAAGGGTTATGATCCAATGACGGAGGCTGTGCTGCTCTGGGAAAGGGAAAACTACGTTACTAAGACAAGATATAATTTCTCTCCTTTTGCAATATCCCTGAATGAATTAACACCTGGACTATTGGAGAAATTGCCTCCAACAGACTCGAGGCTGAGGCCAGATCAAAGACATTTAGAAAATGGTGAATATGAATTGGCAAATGCAGAAAAACTAAGACTTGAACAGCTACAGAGACAGGCGAGGAAGTTGCAAGAGAGGGGCTGGCAGCCAAGATGGTTTCAAAGAGATCAGGACGGTTGTTATAATTACACAGGTGGGTATTGGGAAACTAGGGAGAAAAACAATTGGGATGGAATTCCTGATATTTTTGGCCAGAGTAGTGATACGCCCTCAAGTTCTGTTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

199

Amino Acids

23.28

Weight (kDa)

6.01

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 1 - 175 3.7e-47 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019227)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
pyrus_communis pycom15g31920
rosa_multiflora Rmu_sc0004638.1_g000007
rosa_roxburghii Rroxscaffold_3G00239530
rosa_samantha Rh7DG347500
rosa_wichuraiana Rw7G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 5
AclWI GGATC 2 cut(s) 167, 194
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 1 cut(s) 543
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 5 cut(s) 46, 98, 410, 470, 593
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 37, 415
AluI AGCT 2 cut(s) 37, 415
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 2 cut(s) 167, 194
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 344, 559
ApeKI GCWGC 2 cut(s) 220, 454
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 334
BalI TGGCCA 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 207, 466
BccI CCATC 3 cut(s) 127, 456, 533
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 2 cut(s) 167, 519
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 2 cut(s) 221, 455
BlsI GCNGC 2 cut(s) 222, 456
Bme1390I CCNGG 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 151, 544
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 207, 466
BshFI GGCC 2 cut(s) 346, 561
BsiHKCI CYCGRG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 415
BsnI GGCC 2 cut(s) 346, 561
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 4 cut(s) 172, 199, 349, 475
BspANI GGCC 2 cut(s) 346, 561
BspCNI CTCAG 1 cut(s) 333
BspPI GGATC 2 cut(s) 167, 194
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 115
BssMI GATC 4 cut(s) 172, 199, 349, 475
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 3 cut(s) 249, 341, 401
BstF5I GGATG 2 cut(s) 151, 544
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 175, 202, 352, 478
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 4 cut(s) 172, 199, 349, 475
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 207, 466
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 2 cut(s) 346, 561
BtsCI GGATG 2 cut(s) 151, 544
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 452
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 2 cut(s) 30, 86
CviJI RGCY 8 cut(s) 37, 215, 340, 346, 415, 450, 457, 561
CviKI_1 RGCY 8 cut(s) 37, 215, 340, 346, 415, 450, 457, 561
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 249, 341, 401
DpnI GATC 4 cut(s) 174, 201, 351, 477
DpnII GATC 4 cut(s) 172, 199, 349, 475
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 33, 89
FaiI YATR 8 cut(s) 31, 62, 87, 162, 198, 261, 378, 492
FatI CATG 2 cut(s) 29, 85
Fnu4HI GCNGC 2 cut(s) 221, 455
FokI GGATG 2 cut(s) 158, 551
Fsp4HI GCNGC 2 cut(s) 221, 455
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 167, 519
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 221, 455
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 346, 561
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 33, 89
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 332
HphI GGTGA 1 cut(s) 383
Hpy188III TCNNGA 3 cut(s) 98, 479, 548
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 278, 392, 439
HpyF3I CTNAG 3 cut(s) 249, 341, 401
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 2 cut(s) 33, 89
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 172, 199, 349, 475
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 207, 466
LweI GCATC 1 cut(s) 15
MaeI CTAG 2 cut(s) 167, 519
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 174, 201, 351, 477
MboI GATC 4 cut(s) 172, 199, 349, 475
MfeI CAATTG 1 cut(s) 532
MflI RGATCY 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 8 cut(s) 22, 262, 293, 317, 380, 493, 532, 543
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 200, 350
MnlI CCTC 8 cut(s) 142, 205, 330, 333, 336, 423, 438, 589
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
MseI TTAA 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 561
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 532
MvaI CCWGG 1 cut(s) 303
NdeII GATC 4 cut(s) 172, 199, 349, 475
NlaIII CATG 2 cut(s) 33, 89
NsbI TGCGCA 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 334
PkrI GCNGC 2 cut(s) 222, 456
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PsiI TTATAA 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 334
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 221, 455
Sau3AI GATC 4 cut(s) 172, 199, 349, 475
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 303
SetI ASST 6 cut(s) 39, 84, 246, 304, 417, 505
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 334, 580
SmoI CTYRAG 2 cut(s) 334, 580
Sse9I AATT 8 cut(s) 22, 262, 293, 317, 380, 493, 532, 543
SspMI CTAG 2 cut(s) 167, 519
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 106, 335
TaqII GACCGA 1 cut(s) 81
TasI AATT 8 cut(s) 22, 262, 293, 317, 380, 493, 532, 543
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 220, 454
TspDTI ATGAA 3 cut(s) 74, 306, 393
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 132
XapI RAATTY 1 cut(s) 543
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 2 cut(s) 167, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.