Rroxscaffold_3G00239530

Oxysterol-binding protein-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
29904302 .. 29909650
5349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239530.1

Sequence Viewer

Length: 1599 bp
ATGTCAGAGGGCAGTGGAAGTGATTCTGATGCAGAAAATGAAAGTCAAGATGGAGGAGATGTTGAAACAGATGAAGATGAAGGAACATACTTTGATACTTATGATATTTTGTCTTCAGATGCTTTAAGAAGTGCATCCTACCGGAGTAGAGAAGATGCTTTAAGAAGTGCTTCCTATCGGAGTAGGGATGGTTTGGGAAACGGTGGTGGAGATTCTCTCTTTTCTGATCGATTGCATGCAGTTCAGGAGATCATGACAGTTAAATATCCATCCGTGAAAAGGAGGGATAATTTGCCAGAACCAAAGGAGAAAGATAAGCCTATTGGCTTGTGGTCAATTATCAAGGACAATATTGGAAAGGACTTATCTGGAGTTTGTCTTCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAGTGCTTTGAAGATCTGGAGTATTCCTACTTGGTAGATCGAGCATTGGAATGGGGAAAGCAGGGGAATGACTTGATGAGAATTCTCCACGTTGCAGCTTTTGCTGTATCTGGTTATGCATCAACAGAAGGTCGGCAGTGCAAACCCTTCAATCCTCTCCTGGGGGAGACCTATGAGGCTGATTACCCGGATAAAGGACTTCGTTTCTTTTCTGAAAAGCTTCGGCTCATTTCATTTGAAGCATCACAGCCAAATGTCAAAAGTTTAATAAACACCAATTGCTGTCTAACAAGCAGAGCTTGCACTCAGGTGAGTCACCACCCAATGATTGTTGCCTGTCACTGTCAAGGAAGAAATTGGAAATTTTGGGCTGACTCCAACCTTAAAGGCAAGTTTTGGGGGCGTTCTATACCGCTTGATCCTGTGGGTCTGCTTAACTTGCAGTTTGAGGATGGGGAAACATTTCAGTGGAGCAAGGTCACTGCTTCCATATACAATATCATACTAGGGAAAATTTACTGTGACCATTATGGCACCATGCGCATCAAGGGAAGTGGAAATTACTCATGTAAGCTAAAGTTCAAGGAGCAGTCTATCATAGACCGAAACCCACATCAGGTTCATGGATTTGTTCAAGACAATCGAACTGGAGAGAAAGTAGCAATGTTGATGGGGAAGTGGGATGAGGCAATGTACTATGTTCTAGGAGATCCAACTACAAAACCAAAGGGTTATGATCCAATGAAGGAGGCTGTGCTGCTCTGGGAAAGGGAAAACTACGTTACTAAGACAAGATATAATTTCTCTCCTTTGGCAATATCCCTGAATGAATTAACACCAGGACTATTGGAGAAATTGCCTCCAACAGACTCGAGGCTGAGGCCAGATCAAAGACATTTAGAAAATGGTGAATATGAATTGGCAAATGCAGAAAAACTAAGACTTGAACAGCTACAGAGACAGGCGAGGAAGTTGCAAGAGAGGGGCTGGCAGCCAAGATGGTTTCAAAGAGATCAGGACGGTTGTTATAATTACACAGGTGGGTATTGGGAAACTAGGGAGAAAAACAATTGGGATGGAATTCCTGATATTTTTGGCCAGAGGAGTGATACGCCCTCAAGTTCTGTTGATCTGTACCCCCTTGATTTCTTCCCATTTTCTCAACTGCTCCCCTCGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

60.77

Weight (kDa)

5.44

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 110 - 213 9.3e-39 Oxysterol-binding protein
Oxysterol_BP PF01237 240 - 493 5.4e-79 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019227)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
pyrus_communis pycom15g31920
rosa_multiflora Rmu_sc0004638.1_g000007
rosa_roxburghii Rroxscaffold_3G00239530
rosa_samantha Rh7DG347500
rosa_wichuraiana Rw7G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1446
Acc16I TGCGCA 1 cut(s) 959
AccB1I GGYRCC 1 cut(s) 950
AciI CCGC 1 cut(s) 830
AclWI GGATC 3 cut(s) 830, 1121, 1148
AcoI YGGCCR 1 cut(s) 1513
AcsI RAATTY 4 cut(s) 498, 779, 930, 1497
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 1112, 1553
AfiI CCNNNNNNNGG 4 cut(s) 279, 578, 611, 1033
AgsI TTSAA 8 cut(s) 65, 428, 568, 656, 1000, 1052, 1364, 1424
AjnI CCWGG 2 cut(s) 576, 1255
AleI CACNNNNGTG 1 cut(s) 725
AluBI AGCT 5 cut(s) 515, 637, 716, 991, 1369
AluI AGCT 5 cut(s) 515, 637, 716, 991, 1369
Alw26I GTCTC 2 cut(s) 578, 1369
AlwI GGATC 3 cut(s) 830, 1121, 1148
Ama87I CYCGRG 1 cut(s) 1288
AoxI GGCC 2 cut(s) 1298, 1513
ApeKI GCWGC 3 cut(s) 512, 1174, 1408
ApoI RAATTY 4 cut(s) 498, 779, 930, 1497
Asp700I GAANNNNTTC 4 cut(s) 22, 169, 636, 879
AspLEI GCGC 1 cut(s) 960
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 3 cut(s) 725, 739, 1337
AvaI CYCGRG 1 cut(s) 1288
BalI TGGCCA 1 cut(s) 1515
BanI GGYRCC 1 cut(s) 950
BbsI GAAGAC 2 cut(s) 105, 371
BbvCI CCTCAGC 1 cut(s) 1295
BbvI GCAGC 3 cut(s) 524, 1161, 1420
BccI CCATC 7 cut(s) 44, 182, 277, 863, 1081, 1410, 1487
BcgI CGANNNNNNTGC 2 cut(s) 1372, 1406
BciT130I CCWGG 2 cut(s) 578, 1257
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 2 cut(s) 578, 1369
BfaI CTAG 3 cut(s) 923, 1121, 1473
BfmI CTRYAG 1 cut(s) 1370
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 513, 1175, 1409
BlsI GCNGC 3 cut(s) 514, 1176, 1410
Bme1390I CCNGG 3 cut(s) 578, 605, 1257
BmeT110I CYCGRG 1 cut(s) 1288
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 3 cut(s) 578, 605, 1257
BmsI GCATC 7 cut(s) 19, 109, 143, 145, 545, 668, 969
BpiI GAAGAC 2 cut(s) 105, 371
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 3 cut(s) 390, 455, 1086
Bpu10I CCTNAGC 1 cut(s) 1295
BpuEI CTTGAG 1 cut(s) 1519
BpuMI CCSGG 1 cut(s) 605
Bsa29I ATCGAT 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 577
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 1059, 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 578, 611, 1033
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 3 cut(s) 410, 1086, 1113
BseBI CCWGG 2 cut(s) 578, 1257
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 6 cut(s) 134, 193, 269, 874, 1105, 1498
BseLI CCNNNNNNNGG 4 cut(s) 279, 578, 611, 1033
BseMI GCAATG 3 cut(s) 410, 1086, 1113
BseMII CTCAG 2 cut(s) 737, 1286
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 2 cut(s) 69, 1534
BseXI GCAGC 3 cut(s) 524, 1161, 1420
BshFI GGCC 2 cut(s) 1300, 1515
BshNI GGYRCC 1 cut(s) 950
BshVI ATCGAT 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 1288
BsiSI CCGG 2 cut(s) 142, 605
BslI CCNNNNNNNGG 4 cut(s) 279, 578, 611, 1033
BsmAI GTCTC 2 cut(s) 578, 1369
BsnI GGCC 2 cut(s) 1300, 1515
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 1288
BspACI CCGC 1 cut(s) 830
BspANI GGCC 2 cut(s) 1300, 1515
BspCNI CTCAG 2 cut(s) 736, 1287
BspDI ATCGAT 1 cut(s) 229
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 952
BspPI GGATC 3 cut(s) 830, 1121, 1148
BspT107I GGYRCC 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 3 cut(s) 410, 1086, 1113
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 1 cut(s) 577
Bst2UI CCWGG 2 cut(s) 578, 1257
Bst4CI ACNGT 5 cut(s) 203, 259, 761, 938, 1439
Bst6I CTCTTC 1 cut(s) 412
BstAPI GCANNNNNTGC 2 cut(s) 518, 717
BstC8I GCNNGC 3 cut(s) 237, 718, 1406
BstDEI CTNAG 4 cut(s) 723, 1203, 1295, 1355
BstF5I GGATG 6 cut(s) 134, 193, 269, 874, 1105, 1498
BstHHI GCGC 1 cut(s) 960
BstMAI GTCTC 2 cut(s) 578, 1369
BstMWI GCNNNNNNNGC 5 cut(s) 518, 717, 856, 957, 1591
BstNI CCWGG 2 cut(s) 578, 1257
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 576, 603, 1255
BstSFI CTRYAG 1 cut(s) 1370
BstV1I GCAGC 3 cut(s) 524, 1161, 1420
BstV2I GAAGAC 2 cut(s) 105, 371
BstX2I RGATCY 2 cut(s) 430, 1126
BstYI RGATCY 2 cut(s) 430, 1126
Bsu15I ATCGAT 1 cut(s) 229
BsuRI GGCC 2 cut(s) 1300, 1515
BsuTUI ATCGAT 1 cut(s) 229
BtsCI GGATG 6 cut(s) 134, 193, 269, 874, 1105, 1498
BtsI GCAGTG 3 cut(s) 19, 560, 897
BtsIMutI CAGTG 5 cut(s) 19, 560, 757, 890, 897
Cac8I GCNNGC 3 cut(s) 237, 718, 1406
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 960
ClaI ATCGAT 1 cut(s) 229
Csp6I GTAC 2 cut(s) 1111, 1552
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviAII CATG 5 cut(s) 236, 253, 955, 984, 1040
CviQI GTAC 2 cut(s) 1111, 1552
DdeI CTNAG 4 cut(s) 723, 1203, 1295, 1355
EaeI YGGCCR 1 cut(s) 1513
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 1288
EcoRI GAATTC 2 cut(s) 498, 1497
EcoRII CCWGG 2 cut(s) 576, 1255
EcoT22I ATGCAT 1 cut(s) 538
FaeI CATG 5 cut(s) 239, 256, 958, 987, 1043
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 700, 732
FatI CATG 5 cut(s) 235, 252, 954, 983, 1039
Fnu4HI GCNGC 3 cut(s) 513, 1175, 1409
FokI GGATG 6 cut(s) 121, 200, 256, 881, 1112, 1505
Fsp4HI GCNGC 3 cut(s) 513, 1175, 1409
FspAI RTGCGCAY 1 cut(s) 959
FspBI CTAG 3 cut(s) 923, 1121, 1473
FspI TGCGCA 1 cut(s) 959
GlaI GCGC 1 cut(s) 959
GluI GCNGC 3 cut(s) 513, 1175, 1409
GsuI CTGGAG 3 cut(s) 390, 455, 1086
HaeIII GGCC 2 cut(s) 1300, 1515
HapII CCGG 2 cut(s) 142, 605
HhaI GCGC 1 cut(s) 960
Hin1II CATG 5 cut(s) 239, 256, 958, 987, 1043
Hin6I GCGC 1 cut(s) 958
HinP1I GCGC 1 cut(s) 958
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 23, 212, 730, 791, 1286
HpaII CCGG 2 cut(s) 142, 605
HphI GGTGA 3 cut(s) 725, 739, 1337
Hpy188I TCNGA 6 cut(s) 7, 28, 118, 180, 226, 631
Hpy188III TCNNGA 8 cut(s) 47, 245, 253, 369, 434, 1052, 1433, 1502
HpyAV CCTTC 4 cut(s) 74, 539, 574, 1156
HpyCH4III ACNGT 5 cut(s) 203, 259, 761, 938, 1439
HpyCH4IV ACGT 2 cut(s) 507, 1197
HpyF10VI GCNNNNNNNGC 5 cut(s) 518, 717, 856, 957, 1591
HpyF3I CTNAG 4 cut(s) 723, 1203, 1295, 1355
HpySE526I ACGT 2 cut(s) 507, 1197
Hsp92II CATG 5 cut(s) 239, 256, 958, 987, 1043
HspAI GCGC 1 cut(s) 958
LmnI GCTCC 3 cut(s) 888, 1003, 1590
Lsp1109I GCAGC 3 cut(s) 524, 1161, 1420
LweI GCATC 7 cut(s) 19, 109, 143, 145, 545, 668, 969
MaeI CTAG 3 cut(s) 923, 1121, 1473
MaeII ACGT 2 cut(s) 507, 1197
MaeIII GTNAC 5 cut(s) 731, 755, 895, 938, 1198
MboII GAAGA 8 cut(s) 86, 105, 164, 371, 399, 440, 780, 1558
MfeI CAATTG 2 cut(s) 694, 1486
MflI RGATCY 2 cut(s) 430, 1126
MlsI TGGCCA 1 cut(s) 1515
MluNI TGGCCA 1 cut(s) 1515
MlyI GAGTC 3 cut(s) 739, 785, 1280
MmeI TCCRAC 3 cut(s) 819, 1154, 1304
Mox20I TGGCCA 1 cut(s) 1515
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 4 cut(s) 22, 169, 636, 879
MscI TGGCCA 1 cut(s) 1515
MseI TTAA 8 cut(s) 125, 161, 261, 393, 683, 801, 852, 1250
MslI CAYNNNNRTG 3 cut(s) 466, 725, 883
Msp20I TGGCCA 1 cut(s) 1515
MspI CCGG 2 cut(s) 142, 605
MspR9I CCNGG 3 cut(s) 578, 605, 1257
MunI CAATTG 2 cut(s) 694, 1486
MvaI CCWGG 2 cut(s) 578, 1257
MwoI GCNNNNNNNGC 5 cut(s) 518, 717, 856, 957, 1591
NciI CCSGG 1 cut(s) 605
NlaIII CATG 5 cut(s) 239, 256, 958, 987, 1043
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 4 cut(s) 731, 755, 895, 938
NsbI TGCGCA 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 725
PaeI GCATGC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 1288
PagI TCATGA 1 cut(s) 252
PdmI GAANNNNTTC 4 cut(s) 22, 169, 636, 879
PfeI GAWTC 2 cut(s) 23, 212
PkrI GCNGC 3 cut(s) 514, 1176, 1410
PleI GAGTC 3 cut(s) 738, 785, 1280
PpsI GAGTC 3 cut(s) 738, 785, 1280
PsiI TTATAA 1 cut(s) 1446
Psp6I CCWGG 2 cut(s) 576, 1255
PspGI CCWGG 2 cut(s) 576, 1255
PspN4I GGNNCC 1 cut(s) 952
PspXI VCTCGAGB 1 cut(s) 1288
PsuI RGATCY 2 cut(s) 430, 1126
RsaI GTAC 2 cut(s) 1112, 1553
RsaNI GTAC 2 cut(s) 1111, 1552
RseI CAYNNNNRTG 3 cut(s) 466, 725, 883
SaqAI TTAA 8 cut(s) 125, 161, 261, 393, 683, 801, 852, 1250
SatI GCNGC 3 cut(s) 513, 1175, 1409
SchI GAGTC 3 cut(s) 739, 785, 1280
ScrFI CCNGG 3 cut(s) 578, 605, 1257
SfaNI GCATC 7 cut(s) 19, 109, 143, 145, 545, 668, 969
SfcI CTRYAG 1 cut(s) 1370
Sfr274I CTCGAG 1 cut(s) 1288
SlaI CTCGAG 1 cut(s) 1288
SmiMI CAYNNNNRTG 3 cut(s) 466, 725, 883
SmlI CTYRAG 2 cut(s) 1288, 1534
SmoI CTYRAG 2 cut(s) 1288, 1534
SphI GCATGC 1 cut(s) 239
SsiI CCGC 1 cut(s) 830
SspI AATATT 1 cut(s) 352
SspMI CTAG 3 cut(s) 923, 1121, 1473
StyD4I CCNGG 3 cut(s) 576, 603, 1255
TaaI ACNGT 5 cut(s) 203, 259, 761, 938, 1439
TaiI ACGT 2 cut(s) 510, 1200
TaqI TCGA 4 cut(s) 229, 457, 1060, 1289
TaqII GACCGA 1 cut(s) 1035
TatI WGTACW 1 cut(s) 1110
TfiI GAWTC 2 cut(s) 23, 212
Tru1I TTAA 8 cut(s) 125, 161, 261, 393, 683, 801, 852, 1250
Tru9I TTAA 8 cut(s) 125, 161, 261, 393, 683, 801, 852, 1250
TscAI CASTG 5 cut(s) 19, 560, 764, 890, 904
TseFI GTSAC 4 cut(s) 731, 755, 895, 938
TseI GCWGC 3 cut(s) 512, 1174, 1408
Tsp45I GTSAC 4 cut(s) 731, 755, 895, 938
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 5 cut(s) 19, 560, 764, 890, 904
XapI RAATTY 4 cut(s) 498, 779, 930, 1497
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 1288
XmnI GAANNNNTTC 4 cut(s) 22, 169, 636, 879
XspI CTAG 3 cut(s) 923, 1121, 1473
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.