pycom15g37940

thiamine biosynthetic bifunctional enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
37852848 .. 37859140
6293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1689 bp
ATGGCAAACGAGGCTCACTTTCTCTCCACCTCTCTCTCCTTCCTCTCCTTCAACAAGGCTGTGCTCCCAGAGTTCAGGCAATCAAAAGGTTTGAGCTTTTTGGTGAATTCGAGAATCAGCCGAAGCAAGCAAACGAGAGTTTCAATGGAGATGCTGGGAAGTGGAGGTCCAATGACAAGTGACCACTCTGCAGTTAAGATTCCACATGTACTGACTGTTGCTGGCTCCGATTCCGGTGCCGGTGCTGGAATCCAAGCTGATCTTAAGGCTTGTGCTGCTCGCGGAGTGTACTGCTCTACTGTCATAACCGCTGTTACTGCACAAAACACTGTTGGCGTTCAGGGTGTAAACATTGTGCCCGAGGATTTTGTTGCTGAGCAGATGAAGTCTGTGCTATCTGATATGGATGTTGATGTGGTGAAAACTGGGATGTTACCTTCTATTGGCATCGTTAAGATTTTTCATCAACAACTTCAGGTGTATCCTGTTCGAGCCTTAGTGGTTGATCCTGTTATGGTGTCGACAAGTGGAGATGTATTGGCTGGTCCTTCAATACTTGATGTGTTTAGAGAGGAGCTTCTTCCTATGGCTGACATAGTAACCCCAAATTTGAAAGAGGCATCGGCTTTACTGGATGGAGTGAAAATAAACACAGTTTCTGACATGCGTTCTGCTGCAAAATTGTTACATGATATGGGTCCACGAAATGTTCTTGTCAAAGGCGGAGACCTCCCTGATTCATTGGATGCTGTTGATATCTTCTTTGATGGCGAGAACTTATATGAGCTGCATTCGTCACGCATAAAAACTCGTAATACTCATGGAACTGGTTGCACTTTGGCATCATGTATTGCAGCTGAGCTGGCAAAAGGTTCTTCAATGCTGAAGGCTGTTAAGGCATCTAAGTTCTTTGTTGAGACTGCCTTGGATTATAGCAAAGATATTTCCATTGGAAAAGGTCCCCAAGGCCCTTTCGATCACCTAATGAACCTCAAGCACAACTCTGGTCGACAAGTCAGATTCAATCCAAGCGATCTATTCTTGTATGCTGTTACAGATTCACGTATGAACCAAAAGTGGGGCCATTCTATCTCAGATGCTGTTAAAGATGCCGTACAAGGAGGTGCTACAATTGTCCAATTGAGGGAAAAGGATATTGAAACAGGGGATTTTCTGGAAGCAGCTAAGTCATGTCTCCAAATTTGCCGTGCCCATGGAGTTCCATTACTAATAAATGATCGTCTGGATGTTGCACTTGCTGCTGATGCTGATGGTGTGCACATTGGCCAGTCTGACATGCCTGCCCATGTTGCACGTTCTCTCCTTGGCCCTGAAAAGATAATTGGTGTGTCATGCAAGACACCAGAGCAAGCAGAGCAAGCATGGCTAGATGGTGCTGATTACATTGGTTGTGGTGGTGTATATCCAACTAATACAAAGGAAAACAATCGCACTATAGGCTTGGACGGGCTGAAAACTGTTTGTTTGGCGTCTAAATTACCCGTGGTTGCGATTGGTGGGATCAATATTTCAAATGCGCGTGCGGTGATGGAAATTGGCGTACCAAACCTGAAAGGCATTGCAGTTGTGTCTGCTCTATTTGATAGGGAATGTGTTTTGACAGAGACTAGGAAGTTGCATGCAGTGCTAACGGAGGCAACAGCAGCAGCAGCAGCAGCAGCAAAGTGA

Protein Analysis

563

Amino Acids

59.59

Weight (kDa)

6.18

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phos_pyr_kin PF08543 77 - 321 3.4e-87 Phosphomethylpyrimidine kinase
PfkB PF00294 191 - 300 7.6e-07 pfkB family carbohydrate kinase
TMP-TENI PF02581 348 - 533 1.7e-64 Thiamine monophosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22940
fragaria_vesca FvH4_5g28860 FvH4_5g28860
malus_domestica MD15G1428400.v1.1
prunus_persica Prupe.1G573200_v2.0.a1 Prupe.1G573200_v2.0.a1 Prupe.1G573200_v2.0.a1
pyrus_communis pycom15g37940
rosa_chinensis RchiOBHm_Chr7g0221201
rosa_laevigata RLG00000002172
rosa_multiflora Rmu_sc0000324.1_g000006
rosa_roxburghii Rroxscaffold_3G00238610
rosa_rugosa Rorug07G0201100
rosa_samantha Rh7AG340000 Rh7DG338700
rosa_wichuraiana Rw7G028940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 2 cut(s) 521, 1009
AccII CGCG 2 cut(s) 282, 1540
AciI CCGC 4 cut(s) 282, 309, 723, 1544
AclWI GGATC 2 cut(s) 500, 1529
AcoI YGGCCR 1 cut(s) 1285
AcsI RAATTY 3 cut(s) 106, 607, 1200
AcuI CTGAAG 2 cut(s) 458, 905
AcyI GRCGYC 1 cut(s) 1490
AfaI GTAC 4 cut(s) 210, 290, 1116, 1563
AfiI CCNNNNNNNGG 3 cut(s) 443, 1078, 1144
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 8 cut(s) 52, 144, 552, 613, 879, 1024, 1160, 1533
AjuI GAANNNNNNNTTGG 2 cut(s) 1326, 1358
AluBI AGCT 7 cut(s) 96, 257, 577, 787, 857, 862, 1184
AluI AGCT 7 cut(s) 96, 257, 577, 787, 857, 862, 1184
Alw21I GWGCWC 2 cut(s) 66, 1281
Alw26I GTCTC 4 cut(s) 720, 911, 1199, 1619
Alw44I GTGCAC 1 cut(s) 1277
AlwI GGATC 2 cut(s) 500, 1529
AlwNI CAGNNNCTG 2 cut(s) 659, 1100
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 4 cut(s) 967, 1081, 1285, 1327
ApaLI GTGCAC 1 cut(s) 1277
ApoI RAATTY 3 cut(s) 106, 607, 1200
AspLEI GCGC 1 cut(s) 1540
AspS9I GGNCC 7 cut(s) 167, 545, 698, 959, 968, 1081, 1328
AsuHPI GGTGA 4 cut(s) 115, 430, 971, 1558
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 4 cut(s) 167, 545, 698, 959
BaeGI GKGCMC 3 cut(s) 360, 1213, 1281
BalI TGGCCA 1 cut(s) 1287
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 66, 1281
BccI CCATC 5 cut(s) 629, 761, 1265, 1385, 1543
BceAI ACGGC 2 cut(s) 1097, 1191
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 4 cut(s) 720, 911, 1199, 1619
BfaI CTAG 2 cut(s) 1388, 1629
BfmI CTRYAG 2 cut(s) 189, 1455
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 1 cut(s) 492
BlpI GCTNAGC 2 cut(s) 375, 858
Bme18I GGWCC 4 cut(s) 167, 545, 698, 959
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 7 cut(s) 167, 545, 698, 959, 968, 1081, 1328
BmiI GGNNCC 5 cut(s) 226, 238, 699, 961, 1082
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 9 cut(s) 141, 456, 629, 736, 851, 908, 1087, 1099, 1255
BmuI ACTGGG 1 cut(s) 435
Bpu1102I GCTNAGC 2 cut(s) 375, 858
BpuEI CTTGAG 1 cut(s) 977
BsaAI YACGTR 1 cut(s) 1064
BsaHI GRCGYC 1 cut(s) 1490
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 6 cut(s) 360, 924, 964, 1213, 1324, 1503
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 1305, 1335
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 1078, 1144
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 4 cut(s) 430, 636, 832, 1288
Bse3DI GCAATG 1 cut(s) 1578
BseDI CCNNGG 6 cut(s) 360, 924, 964, 1213, 1324, 1503
BseGI GGATG 5 cut(s) 412, 435, 640, 751, 1252
BseLI CCNNNNNNNGG 3 cut(s) 443, 1078, 1144
BseMI GCAATG 1 cut(s) 1578
BseMII CTCAG 3 cut(s) 366, 849, 1107
BseNI ACTGG 4 cut(s) 430, 636, 832, 1288
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 3 cut(s) 360, 1213, 1281
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 2 cut(s) 282, 1540
BshFI GGCC 4 cut(s) 969, 1083, 1287, 1329
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 66, 1281
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 234, 240
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 3 cut(s) 443, 1078, 1144
BsmAI GTCTC 4 cut(s) 720, 911, 1199, 1619
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 4 cut(s) 969, 1083, 1287, 1329
Bso31I GGTCTC 1 cut(s) 720
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 4 cut(s) 66, 360, 1213, 1281
Bsp143I GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
Bsp1720I GCTNAGC 2 cut(s) 375, 858
Bsp19I CCATGG 1 cut(s) 1213
BspACI CCGC 4 cut(s) 282, 309, 723, 1544
BspANI GGCC 4 cut(s) 969, 1083, 1287, 1329
BspCNI CTCAG 3 cut(s) 367, 850, 1106
BspFNI CGCG 2 cut(s) 282, 1540
BspLI GGNNCC 5 cut(s) 226, 238, 699, 961, 1082
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 2 cut(s) 500, 1529
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 720
BsrDI GCAATG 1 cut(s) 1578
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 4 cut(s) 430, 636, 832, 1288
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 6 cut(s) 360, 924, 964, 1213, 1324, 1503
BssMI GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
BssNI GRCGYC 1 cut(s) 1490
BssT1I CCWWGG 4 cut(s) 924, 964, 1213, 1324
Bst4CI ACNGT 5 cut(s) 217, 301, 331, 655, 1480
BstACI GRCGYC 1 cut(s) 1490
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 2 cut(s) 1259, 1645
BstBAI YACGTR 1 cut(s) 1064
BstC8I GCNNGC 9 cut(s) 128, 223, 280, 864, 1302, 1371, 1380, 1542, 1641
BstDEI CTNAG 6 cut(s) 375, 496, 858, 903, 1093, 1185
BstDSI CCRYGG 2 cut(s) 1213, 1503
BstF5I GGATG 5 cut(s) 412, 435, 640, 751, 1252
BstFNI CGCG 2 cut(s) 282, 1540
BstHHI GCGC 1 cut(s) 1540
BstKTI GATC 6 cut(s) 262, 508, 979, 1036, 1240, 1524
BstMAI GTCTC 4 cut(s) 720, 911, 1199, 1619
BstMBI GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
BstNSI RCATGY 4 cut(s) 209, 667, 1300, 1643
BstSFI CTRYAG 2 cut(s) 189, 1455
BstSLI GKGCMC 3 cut(s) 360, 1213, 1281
BstUI CGCG 2 cut(s) 282, 1540
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 4 cut(s) 969, 1083, 1287, 1329
BtgI CCRYGG 2 cut(s) 1213, 1503
BtsCI GGATG 5 cut(s) 412, 435, 640, 751, 1252
BtsI GCAGTG 1 cut(s) 1650
BtsIMutI CAGTG 2 cut(s) 327, 1650
Cac8I GCNNGC 9 cut(s) 128, 223, 280, 864, 1302, 1371, 1380, 1542, 1641
CaiI CAGNNNCTG 2 cut(s) 659, 1100
CfoI GCGC 1 cut(s) 1540
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 7 cut(s) 167, 545, 698, 959, 968, 1081, 1328
CseI GACGC 1 cut(s) 1479
Csp6I GTAC 4 cut(s) 209, 289, 1115, 1562
CviQI GTAC 4 cut(s) 209, 289, 1115, 1562
DdeI CTNAG 6 cut(s) 375, 496, 858, 903, 1093, 1185
DpnI GATC 6 cut(s) 261, 507, 978, 1035, 1239, 1523
DpnII GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
EaeI YGGCCR 1 cut(s) 1285
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 4 cut(s) 924, 964, 1213, 1324
Eco31I GGTCTC 1 cut(s) 720
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 4 cut(s) 167, 545, 698, 959
Eco57I CTGAAG 2 cut(s) 458, 905
Eco88I CYCGRG 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 959, 968
EcoRI GAATTC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 4 cut(s) 924, 964, 1213, 1324
ErhI CCWWGG 4 cut(s) 924, 964, 1213, 1324
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 945
FblI GTMKAC 2 cut(s) 521, 1009
FokI GGATG 5 cut(s) 419, 442, 647, 758, 1259
FspBI CTAG 2 cut(s) 1388, 1629
GlaI GCGC 1 cut(s) 1539
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 4 cut(s) 969, 1083, 1287, 1329
HapII CCGG 2 cut(s) 234, 240
HgaI GACGC 1 cut(s) 1479
HhaI GCGC 1 cut(s) 1540
Hin1I GRCGYC 1 cut(s) 1490
Hin6I GCGC 1 cut(s) 1538
HinP1I GCGC 1 cut(s) 1538
HincII GTYRAC 2 cut(s) 522, 1010
HindII GTYRAC 2 cut(s) 522, 1010
HinfI GANTC 7 cut(s) 114, 199, 230, 249, 737, 1020, 1058
HpaII CCGG 2 cut(s) 234, 240
HphI GGTGA 4 cut(s) 115, 430, 971, 1558
Hpy166II GTNNAC 6 cut(s) 289, 349, 522, 701, 1010, 1279
Hpy188I TCNGA 6 cut(s) 229, 400, 661, 1019, 1096, 1294
Hpy188III TCNNGA 3 cut(s) 111, 1175, 1244
Hpy8I GTNNAC 6 cut(s) 289, 349, 522, 701, 1010, 1279
HpyAV CCTTC 5 cut(s) 49, 58, 447, 558, 880
HpyCH4III ACNGT 5 cut(s) 217, 301, 331, 655, 1480
HpyCH4IV ACGT 2 cut(s) 1063, 1315
HpyF3I CTNAG 6 cut(s) 375, 496, 858, 903, 1093, 1185
HpySE526I ACGT 2 cut(s) 1063, 1315
Hsp92I GRCGYC 1 cut(s) 1490
HspAI GCGC 1 cut(s) 1538
Kzo9I GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
LmnI GCTCC 3 cut(s) 69, 230, 574
LweI GCATC 9 cut(s) 141, 456, 629, 736, 851, 908, 1087, 1099, 1255
MaeI CTAG 2 cut(s) 1388, 1629
MaeII ACGT 2 cut(s) 1063, 1315
MaeIII GTNAC 7 cut(s) 179, 313, 432, 598, 684, 795, 1051
MalI GATC 6 cut(s) 261, 507, 978, 1035, 1239, 1523
MboI GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
MboII GAAGA 3 cut(s) 572, 751, 867
MfeI CAATTG 2 cut(s) 1131, 1139
MhlI GDGCHC 4 cut(s) 66, 360, 1213, 1281
MlsI TGGCCA 1 cut(s) 1287
MluCI AATT 9 cut(s) 106, 607, 680, 1131, 1139, 1200, 1341, 1496, 1554
MluNI TGGCCA 1 cut(s) 1287
MmeI TCCRAC 1 cut(s) 1451
Mox20I TGGCCA 1 cut(s) 1287
MscI TGGCCA 1 cut(s) 1287
MseI TTAA 5 cut(s) 195, 264, 453, 894, 1104
Msp20I TGGCCA 1 cut(s) 1287
MspA1I CMGCKG 2 cut(s) 311, 857
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 2 cut(s) 234, 240
MunI CAATTG 2 cut(s) 1131, 1139
Mva1269I GAATGC 1 cut(s) 790
MvnI CGCG 2 cut(s) 282, 1540
NcoI CCATGG 1 cut(s) 1213
NdeII GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
NlaIV GGNNCC 5 cut(s) 226, 238, 699, 961, 1082
NmuCI GTSAC 2 cut(s) 179, 795
NspI RCATGY 4 cut(s) 209, 667, 1300, 1643
PaeI GCATGC 1 cut(s) 1643
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 7 cut(s) 114, 199, 230, 249, 737, 1020, 1058
Ppu21I YACGTR 1 cut(s) 1064
PpuMI RGGWCCY 1 cut(s) 959
PscI ACATGT 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 959
PspFI CCCAGC 1 cut(s) 154
PspN4I GGNNCC 5 cut(s) 226, 238, 699, 961, 1082
PspPI GGNCC 7 cut(s) 167, 545, 698, 959, 968, 1081, 1328
PspPPI RGGWCCY 1 cut(s) 959
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 2 cut(s) 659, 1100
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 4 cut(s) 210, 290, 1116, 1563
RsaNI GTAC 4 cut(s) 209, 289, 1115, 1562
SalI GTCGAC 2 cut(s) 520, 1008
SaqAI TTAA 5 cut(s) 195, 264, 453, 894, 1104
Sau3AI GATC 6 cut(s) 259, 505, 976, 1033, 1237, 1521
Sau96I GGNCC 7 cut(s) 167, 545, 698, 959, 968, 1081, 1328
SduI GDGCHC 4 cut(s) 66, 360, 1213, 1281
SfaNI GCATC 9 cut(s) 141, 456, 629, 736, 851, 908, 1087, 1099, 1255
SfcI CTRYAG 2 cut(s) 189, 1455
SinI GGWCC 4 cut(s) 167, 545, 698, 959
SmlI CTYRAG 2 cut(s) 263, 992
SmoI CTYRAG 2 cut(s) 263, 992
SphI GCATGC 1 cut(s) 1643
Sse9I AATT 9 cut(s) 106, 607, 680, 1131, 1139, 1200, 1341, 1496, 1554
SsiI CCGC 4 cut(s) 282, 309, 723, 1544
SspI AATATT 1 cut(s) 1528
SspMI CTAG 2 cut(s) 1388, 1629
StyI CCWWGG 4 cut(s) 924, 964, 1213, 1324
TaaI ACNGT 5 cut(s) 217, 301, 331, 655, 1480
TaiI ACGT 2 cut(s) 1066, 1318
TaqI TCGA 5 cut(s) 110, 490, 521, 975, 1009
TasI AATT 9 cut(s) 106, 607, 680, 1131, 1139, 1200, 1341, 1496, 1554
TatI WGTACW 2 cut(s) 208, 288
TfiI GAWTC 7 cut(s) 114, 199, 230, 249, 737, 1020, 1058
Tru1I TTAA 5 cut(s) 195, 264, 453, 894, 1104
Tru9I TTAA 5 cut(s) 195, 264, 453, 894, 1104
TscAI CASTG 2 cut(s) 334, 1650
TseFI GTSAC 2 cut(s) 179, 795
Tsp45I GTSAC 2 cut(s) 179, 795
TspDTI ATGAA 5 cut(s) 398, 452, 729, 1001, 1082
TspGWI ACGGA 1 cut(s) 1667
TspRI CASTG 2 cut(s) 334, 1650
Vha464I CTTAAG 1 cut(s) 263
VneI GTGCAC 1 cut(s) 1277
VpaK11BI GGWCC 4 cut(s) 167, 545, 698, 959
XapI RAATTY 3 cut(s) 106, 607, 1200
XceI RCATGY 4 cut(s) 209, 667, 1300, 1643
XmiI GTMKAC 2 cut(s) 521, 1009
XspI CTAG 2 cut(s) 1388, 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.