Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Forward (+)

17465080 .. 17474005

Gene Structure 8926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0201100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCATGGTTATTGATTCTCTCTTCTGTGATTGTAATATGGATAGCTTCTCTGTTCAAAATTCTCCATGGTTCATACTCACCATCTAAGGGCACTTTCTTGAATGATTCCAATGATGATGCCAGTGCCAAGAAGAGAAATGTGTTGCTGGTTGTTGCTCACCCAGATGATGAGTCCATGTTCTTCACTCCAACAATAAACTACCTCACTTCGAGAGGGCATAATATTCACATCTTATGCTTGTCAATTGGTGATGCAGATGGTAAAGGAAATACTAGAAAAGAAGAGCTCTACAAGGCTTCTGCAACCCTCAAGGTTCCACATCAACAAGTGAAGATTCTGGACCATCCAGATCTTCAGGATGGTTTTGGCAAGGTGTGGAATCACAATTTATTGGCAAAGATTATTGAAGAGGAAGTCGTAAGTCAGGGCATTGACTTGATAATCACTTTTGATAACTATGGAGTTTCGGGACACTGTAACCATTGTGACGTACATTATGGAGTAAGGAAGCTCTTACTTGCATCGTCACATAGGAATGTTGAAGCCTGGGAACTCGTCAGTACTAACATATTCCGCAAGTATAGTGGACCAGTGGATATATGGTTCTCCAATTTATATTTTATGCAATGCTCAAATGAAATGTTGCATTGCTTGGTAAACGAGCAGCCCCGAAAGAGTTTCCTCGCGATGGCACAACATGCAAGCCAGTGGGTTTGGTTTCGCAAGCTTTTTGTGGCATTTTCGAGCTGCACCTATGTGAATACGCTTAGAAAGATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004789 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008902 GO:0008972 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016765 GO:0016772 GO:0016773 GO:0016776 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Phos_pyr_kin TMP-TENI

Protein Analysis

261

Amino Acids

29.73

Weight (kDa)

8.17

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-L	PF02585	49 - 171	6.1e-22	GlcNAc-PI de-N-acetylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	689
AciI	CCGC	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	495, 565
AfiI	CCNNNNNNNGG	2 cut(s)	89, 691
AgsI	TTSAA	4 cut(s)	58, 103, 410, 545
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	758
AloI	GAACNNNNNNTCC	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	47, 289, 514, 730, 750
AluI	AGCT	5 cut(s)	47, 289, 514, 730, 750
Alw21I	GWGCWC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	667, 750
ApoI	RAATTY	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	343, 590
AsuHPI	GGTGA	3 cut(s)	72, 152, 263
AvaII	GGWCC	2 cut(s)	343, 590
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	679, 737
BccI	CCATC	5 cut(s)	91, 254, 354, 356, 685
BciT130I	CCWGG	1 cut(s)	550
BfaI	CTAG	1 cut(s)	276
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	2 cut(s)	668, 751
BlsI	GCNGC	2 cut(s)	669, 752
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	2 cut(s)	343, 590
BmgT120I	GGNCC	2 cut(s)	343, 590
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	3 cut(s)	109, 244, 533
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	67, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 691
Bse1I	ACTGG	3 cut(s)	123, 593, 709
Bse3DI	GCAATG	2 cut(s)	635, 649
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	67, 549
BseGI	GGATG	2 cut(s)	346, 367
BseLI	CCNNNNNNNGG	2 cut(s)	89, 691
BseMI	GCAATG	2 cut(s)	635, 649
BseNI	ACTGG	3 cut(s)	123, 593, 709
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	679, 737
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	89, 691
BsmFI	GGGAC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	95, 291
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	67
Bsp68I	TCGCGA	1 cut(s)	689
BspACI	CCGC	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	1 cut(s)	318
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	635, 649
BsrI	ACTGG	3 cut(s)	123, 593, 709
BssECI	CCNNGG	2 cut(s)	67, 549
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	4 cut(s)	28, 128, 279, 405
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	706, 728
BstDEI	CTNAG	2 cut(s)	87, 770
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	346, 367
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	548
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	2 cut(s)	679, 737
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	346, 367
BtsIMutI	CAGTG	4 cut(s)	130, 475, 600, 716
BtuMI	TCGCGA	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	706, 728
Cfr13I	GGNCC	2 cut(s)	343, 590
Csp6I	GTAC	2 cut(s)	494, 564
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	4 cut(s)	6, 68, 178, 701
CviJI	RGCY	9 cut(s)	47, 289, 299, 514, 548, 670, 708, 730, 750
CviKI_1	RGCY	9 cut(s)	47, 289, 299, 514, 548, 670, 708, 730, 750
CviQI	GTAC	2 cut(s)	494, 564
DdeI	CTNAG	2 cut(s)	87, 770
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	4 cut(s)	28, 128, 279, 405
EarI	CTCTTC	4 cut(s)	28, 128, 279, 405
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	343, 590
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	9, 71, 181, 704
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	4 cut(s)	5, 67, 177, 700
Fnu4HI	GCNGC	2 cut(s)	668, 751
FokI	GGATG	2 cut(s)	333, 374
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	668, 751
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	668, 751
Hin1II	CATG	4 cut(s)	9, 71, 181, 704
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	5 cut(s)	16, 107, 173, 337, 382
HphI	GGTGA	3 cut(s)	72, 152, 263
Hpy166II	GTNNAC	2 cut(s)	590, 661
Hpy188III	TCNNGA	7 cut(s)	100, 213, 341, 350, 359, 471, 688
Hpy8I	GTNNAC	2 cut(s)	590, 661
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	7 cut(s)	257, 305, 524, 628, 649, 704, 753
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	2 cut(s)	87, 770
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	9, 71, 181, 704
Kzo9I	GATC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	279
Lsp1109I	GCAGC	2 cut(s)	679, 737
LweI	GCATC	3 cut(s)	109, 244, 533
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	479, 488, 528
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	7 cut(s)	15, 145, 175, 296, 346, 347, 422
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	95, 291
MluCI	AATT	4 cut(s)	60, 246, 388, 613
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	209, 215, 320, 406, 695
MslI	CAYNNNNRTG	3 cut(s)	165, 537, 758
MspR9I	CCNGG	1 cut(s)	550
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	701
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	9, 71, 181, 704
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	488, 528
NruI	TCGCGA	1 cut(s)	689
NspI	RCATGY	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	16, 107, 337, 382
PkrI	GCNGC	2 cut(s)	669, 752
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	343, 590
PsuI	RGATCY	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	689
RsaI	GTAC	2 cut(s)	495, 565
RsaNI	GTAC	2 cut(s)	494, 564
RseI	CAYNNNNRTG	3 cut(s)	165, 537, 758
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	2 cut(s)	668, 751
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	343, 590
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	2 cut(s)	95, 291
SfaNI	GCATC	3 cut(s)	109, 244, 533
SinI	GGWCC	2 cut(s)	343, 590
SmiMI	CAYNNNNRTG	3 cut(s)	165, 537, 758
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	60, 246, 388, 613
SsiI	CCGC	1 cut(s)	577
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	212, 746
TasI	AATT	4 cut(s)	60, 246, 388, 613
TatI	WGTACW	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	16, 107, 337, 382
TscAI	CASTG	4 cut(s)	130, 482, 600, 716
TseFI	GTSAC	2 cut(s)	488, 528
TseI	GCWGC	2 cut(s)	667, 750
Tsp45I	GTSAC	2 cut(s)	488, 528
TspDTI	ATGAA	2 cut(s)	63, 654
TspRI	CASTG	4 cut(s)	130, 482, 600, 716
VpaK11BI	GGWCC	2 cut(s)	343, 590
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XspI	CTAG	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.