Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Reverse (-)

56598493 .. 56603526

Gene Structure 5034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGAGTTCCCACTACATGACGCCGGAGCCACTCTCGGCCTCGGGTCGGAGCTCCGAGAAGATGAGCCTGCCGACACTTCAATCCAAGATGAAGTGCGACCCGGAAGGCTACGAGACGGAGCTCCTCCTTGTGTACAACCAATTCAAGTCGTCGCTGGAGCTCTTCAAGCAACAAGCCGATCTCGGATTCAAGTCCGTCACCGGCAGCGGCGGAAGCGACCCCACCGTCGCCAAGGACCTCGCCGACCGGGCATTGTTTCTCGCCCACGTCACCCCCTTTTACCCGGCCCAATTGGCCCAATTCCCCTCACAGCTCTCCGAGTTTCTCCACTCCTCCGCCCGAACTCTTCCCTCTGGTCTCAGATTGCATGTTGCTCAAGCTCTCATTCTTCTTATGAACAGAAAGATGGTGGATATTGCAGACAATCTAGGTTTGTTCATGGAGATACAGACTTATGGCGATAAGGCTTTAAAGACCCTGGCATACAATCATGTCATACATAGCATAAAGCGAATGAATATGAAGCATAAGAACGAAGCTAAGAATCGGGTGCTTCAGAATGTCTTGTTTCGGATGCTACAGCTAGAGGATGAAACAAAAGCAAAGAGAGCACTTATCACTCTGCGTGAGCTTCACCGGAGAAAGGTGTGGTTTGATGAAAATACAGCGAATGCAATCTGCTCTGCGTGTTTTCATCCATCGTCGAGGATAATGATTGCTTGTCTCTCATTTCTGCTTGATTACGAGAAGATTGAGGAGGAGGATGATAGTGATGCGTCAAGTAGTGATGAGGACACTCCTATTAAATCTCATCTAGCCATTAATAGAGAGGATATATATAAGGCGCACCATAAGGGTACACTTGCTAGCAAGAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATCCGTAGCCTGAAAAAACAGCAACGCATAACATCAGAAAAAAGTACTTCAAATTATCATACGCCACTTAATCATTTGAGAGATCCACAGGAATTCGCTGAGAAGCTATTCTCCCGTCTTCAAAATAGTACAAGAGTTGAACGCTTTGAGGTCAAAATGATGATGTTGAAAGTAGTTGCTCGAACTATTGGGCTTCATCGCTTGGTTCTGTTGAACTTTTATCCTTATTTTATCAACTACATTACACCTCATCAAAATGGTGTCACTGAATTACTCGCTGCAGCAGTCCAGGCCTGCCATGATATGGTTCCTCCTGATGCAGTTGAACCACTTTTCAAACAAATAGTGAACAAATTTATAGATGATCGTGCACAGCCAGAGGCCATAGCTGTTGGACTGAATACAACGAGGGAAATTTGTTTACGAATGCCTTTGTTGATGACAGAAGATTTGCTGCAAGATCTTGCATTATATAAGAAATCACATACAAAAGCAGTGTCGGTAGCAGCCCGTTCACTTATTGGCTTATTCAGAGAGCTTAACCCCTCGCTGCTGATTAAGAAGGATCGTGGTCGCCAACATGTTGACTCAAAGGCAAGGCCAAAAGCGTATGGAGAAGCCGATGTACTTAGCAATGTACCTGGTCTTGATTTACTAAAACATGATGATGACAATGGGGAGAGTGATGATGATGATGATGATGAACCTTCAGTAAGGGGCACTGACGAGATGGTAGCTTCCAGTGATGATGAAGGCTTGCAAATAACCAACACTGATAGTGGAAGTGAAGATGACAACATGATATCTGAAGATGGTGATGAGATAGATGAGAATGACAGTGATGTGAGTGGTGATGAGGATGAGGTGGAAGCGGAGGATGAAGATGAGGATGAGGAAGAGAATACAGAGGATGAGGAGGAAGAATTTGACAATAATGATGCCAAAGATGGTGGATCTGGAGTAAAAGAAAACATAGCAAAAAAGAGGAAATTTGCTGATTTTGATACACAACTTAATGACGCTGAAGCAAGTCTTAGGACTTTGAAGAGATTAGCCAAAGAAAATATGGGTCCTGCTCCATCAGACTCGACAGATGGTTTTCTTTCTAATGAGGACTTCCGGAGGATTAAGGAATTAAAGGCAAAGCAGCGATTGGCTCAGCAGGGGTTGTTGAAAAAGAGCTCAGATGCGAAGTCAACAGCATTCAAGATTCCCACTTCTGATGAATTAAGCATTAAGCGAATAGATCCTGCTAAGCTTGAAGTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAGTGAAAGCAGGGAGGGAGGATAGAGGGAAGTACATGGCTAGAGCTGCTGTGAAACAGAAGAAGTTGGGAGGCCTGAGCAATAAGCAGAAGGAACATAAGAAGGCTATGCCACTTGTTGCAAAGAGGGCAAAGGTAGCTAAATCTCGAGTGGAAAAACGCAAAAAGCAGCAGCTTTCTGGCAAAAATTTCCGAGGGAAGAAAGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

807

Amino Acids

91.09

Weight (kDa)

6.78

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDA1_HEAT	PF08158	86 - 462	8.8e-129	SDA1, HEAT repeat
SDA1_C	PF21638	760 - 805	1.8e-07	SDA1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	1207
AccIII	TCCGGA	1 cut(s)	2022
AciI	CCGC	4 cut(s)	207, 210, 336, 1775
AclWI	GGATC	4 cut(s)	980, 1476, 1864, 2144
AcsI	RAATTY	6 cut(s)	995, 1256, 1317, 1826, 1892, 2395
AcuI	CTGAAG	4 cut(s)	539, 1596, 1731, 1947
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	7 cut(s)	134, 859, 949, 1033, 1530, 1542, 2243
AfiI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
AflIII	ACRYGT	1 cut(s)	1483
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	477, 1191, 1543
Alw21I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2087
Alw26I	GTCTC	3 cut(s)	107, 362, 728
Alw44I	GTGCAC	1 cut(s)	1272
AlwI	GGATC	4 cut(s)	980, 1476, 1864, 2144
Ama87I	CYCGRG	2 cut(s)	40, 2355
Aor13HI	TCCGGA	1 cut(s)	2022
AoxI	GGCC	7 cut(s)	36, 285, 294, 1194, 1284, 1502, 2281
ApaLI	GTGCAC	1 cut(s)	1272
ApoI	RAATTY	6 cut(s)	995, 1256, 1317, 1826, 1892, 2395
ArsI	GACNNNNNNTTYG	4 cut(s)	1336, 1368, 1385, 1417
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	1 cut(s)	1010
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	4 cut(s)	235, 286, 295, 1973
AsuC2I	CCSGG	3 cut(s)	101, 248, 284
AsuHPI	GGTGA	5 cut(s)	190, 262, 626, 1730, 1766
AsuNHI	GCTAGC	1 cut(s)	866
AvaI	CYCGRG	2 cut(s)	40, 2355
AvaII	GGWCC	2 cut(s)	235, 1973
BaeGI	GKGCMC	2 cut(s)	1276, 1625
BanII	GRGCYC	4 cut(s)	53, 123, 162, 2087
BarI	GAAGNNNNNNTAC	2 cut(s)	1512, 1544
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2087
BccI	CCATC	8 cut(s)	400, 706, 911, 1627, 1709, 1844, 1990, 1991
BciT130I	CCWGG	3 cut(s)	479, 1193, 1545
BcnI	CCSGG	3 cut(s)	101, 248, 284
BcoDI	GTCTC	3 cut(s)	107, 362, 728
BfaI	CTAG	5 cut(s)	428, 584, 815, 867, 2250
BfmI	CTRYAG	3 cut(s)	578, 893, 1182
BglI	GCCNNNNNGGC	2 cut(s)	248, 293
BglII	AGATCT	1 cut(s)	1363
BlpI	GCTNAGC	2 cut(s)	2061, 2157
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
Bme18I	GGWCC	2 cut(s)	235, 1973
BmeT110I	CYCGRG	2 cut(s)	40, 2355
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	235, 286, 295, 1973
BmiI	GGNNCC	3 cut(s)	27, 1212, 1974
BmrFI	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
BmsI	GCATC	5 cut(s)	564, 763, 1210, 1831, 2080
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	1013
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	176, 1881
Bpu10I	CCTNAGC	1 cut(s)	2285
Bpu1102I	GCTNAGC	2 cut(s)	2061, 2157
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	101, 248, 284
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	5 cut(s)	39, 231, 477, 2190, 2401
BsaWI	WCCGGW	2 cut(s)	636, 2022
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	1644
Bse3DI	GCAATG	1 cut(s)	1543
BseAI	TCCGGA	1 cut(s)	2022
BseBI	CCWGG	3 cut(s)	479, 1193, 1545
BseDI	CCNNGG	5 cut(s)	39, 231, 477, 2190, 2401
BseGI	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1768, 1786, 1798, 1819
BseLI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
BseMI	GCAATG	1 cut(s)	1543
BseMII	CTCAG	5 cut(s)	373, 993, 2075, 2100, 2276
BseNI	ACTGG	1 cut(s)	1644
BseRI	GAGGAG	6 cut(s)	113, 322, 770, 773, 1832, 2210
BseSI	GKGCMC	2 cut(s)	1276, 1625
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	7 cut(s)	38, 287, 296, 1196, 1286, 1504, 2283
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2087
BsiHKCI	CYCGRG	2 cut(s)	40, 2355
BsiSI	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2023
BslI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
BsmAI	GTCTC	3 cut(s)	107, 362, 728
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	3 cut(s)	676, 1335, 2105
BsnI	GGCC	7 cut(s)	38, 287, 296, 1196, 1286, 1504, 2283
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	40, 2355
Bsp1286I	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2087
Bsp13I	TCCGGA	1 cut(s)	2022
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
Bsp1720I	GCTNAGC	2 cut(s)	2061, 2157
BspACI	CCGC	4 cut(s)	207, 210, 336, 1775
BspANI	GGCC	7 cut(s)	38, 287, 296, 1196, 1286, 1504, 2283
BspCNI	CTCAG	5 cut(s)	372, 994, 2074, 2099, 2277
BspEI	TCCGGA	1 cut(s)	2022
BspLI	GGNNCC	3 cut(s)	27, 1212, 1974
BspMAI	CTGCAG	2 cut(s)	897, 1186
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	4 cut(s)	980, 1476, 1864, 2144
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	1543
BsrFI	RCCGGY	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	1644
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	39, 231, 477, 2190, 2401
BssMI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	231, 2190
Bst2UI	CCWGG	3 cut(s)	479, 1193, 1545
Bst4CI	ACNGT	2 cut(s)	226, 1742
Bst6I	CTCTTC	4 cut(s)	167, 351, 1794, 1943
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	6 cut(s)	68, 868, 900, 1198, 1661, 2205
BstDEI	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1937, 2061, 2086, 2157, 2285
BstF5I	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1768, 1786, 1798, 1819
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	7 cut(s)	181, 988, 1270, 1366, 1471, 1859, 2152
BstMAI	GTCTC	3 cut(s)	107, 362, 728
BstMBI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	9 cut(s)	166, 213, 248, 293, 608, 1193, 2255, 2336, 2345
BstNI	CCWGG	3 cut(s)	479, 1193, 1545
BstNSI	RCATGY	2 cut(s)	371, 1487
BstSCI	CCNGG	6 cut(s)	99, 246, 282, 477, 1191, 1543
BstSFI	CTRYAG	3 cut(s)	578, 893, 1182
BstSLI	GKGCMC	2 cut(s)	1276, 1625
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	4 cut(s)	985, 1363, 1856, 2149
BstYI	RGATCY	4 cut(s)	985, 1363, 1856, 2149
BsuRI	GGCC	7 cut(s)	38, 287, 296, 1196, 1286, 1504, 2283
BtgZI	GCGATG	1 cut(s)	1085
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1768, 1786, 1798, 1819
BtsI	GCAGTG	1 cut(s)	1404
BtsIMutI	CAGTG	6 cut(s)	1167, 1404, 1623, 1651, 1674, 1747
Cac8I	GCNNGC	6 cut(s)	68, 868, 900, 1198, 1661, 2205
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	235, 286, 295, 1973
CseI	GACGC	3 cut(s)	28, 765, 1931
CsiI	ACCWGGT	1 cut(s)	1543
Csp6I	GTAC	7 cut(s)	133, 858, 948, 1032, 1529, 1541, 2242
CspCI	CAANNNNNGTGG	2 cut(s)	1834, 1869
CviQI	GTAC	7 cut(s)	133, 858, 948, 1032, 1529, 1541, 2242
DdeI	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1937, 2061, 2086, 2157, 2285
DpnI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1858, 2151
DpnII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
DraI	TTTAAA	1 cut(s)	471
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	4 cut(s)	167, 351, 1794, 1943
EarI	CTCTTC	4 cut(s)	167, 351, 1794, 1943
EciI	GGCGGA	2 cut(s)	225, 325
Ecl136II	GAGCTC	4 cut(s)	51, 121, 160, 2085
Eco130I	CCWWGG	2 cut(s)	231, 2190
Eco147I	AGGCCT	2 cut(s)	1196, 2283
Eco24I	GRGCYC	4 cut(s)	53, 123, 162, 2087
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	1707
Eco47I	GGWCC	2 cut(s)	235, 1973
Eco53kI	GAGCTC	4 cut(s)	51, 121, 160, 2085
Eco57I	CTGAAG	4 cut(s)	539, 1596, 1731, 1947
Eco88I	CYCGRG	2 cut(s)	40, 2355
EcoICRI	GAGCTC	4 cut(s)	51, 121, 160, 2085
EcoO109I	RGGNCCY	2 cut(s)	235, 1973
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	3 cut(s)	477, 1191, 1543
EcoRV	GATATC	1 cut(s)	1707
EcoT14I	CCWWGG	2 cut(s)	231, 2190
EcoT38I	GRGCYC	4 cut(s)	53, 123, 162, 2087
ErhI	CCWWGG	2 cut(s)	231, 2190
Esp3I	CGTCTC	1 cut(s)	107
FalI	AAGNNNNNCTT	2 cut(s)	1920, 1952
FokI	GGATG	9 cut(s)	586, 602, 681, 776, 890, 1775, 1793, 1805, 1826
FriOI	GRGCYC	4 cut(s)	53, 123, 162, 2087
FspBI	CTAG	5 cut(s)	428, 584, 815, 867, 2250
GlaI	GCGC	1 cut(s)	846
GsuI	CTGGAG	2 cut(s)	176, 1881
HaeIII	GGCC	7 cut(s)	38, 287, 296, 1196, 1286, 1504, 2283
HapII	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2023
HgaI	GACGC	3 cut(s)	28, 765, 1931
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	2 cut(s)	1489, 2100
HindII	GTYRAC	2 cut(s)	1489, 2100
HindIII	AAGCTT	1 cut(s)	2159
HinfI	GANTC	5 cut(s)	186, 544, 1490, 1988, 2113
HpaII	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2023
HphI	GGTGA	5 cut(s)	190, 262, 626, 1730, 1766
Hpy166II	GTNNAC	8 cut(s)	133, 860, 1252, 1274, 1325, 1418, 1489, 2100
Hpy188III	TCNNGA	6 cut(s)	1217, 1550, 1860, 2023, 2110, 2355
Hpy8I	GTNNAC	8 cut(s)	133, 860, 1252, 1274, 1325, 1418, 1489, 2100
Hpy99I	CGWCG	3 cut(s)	154, 230, 706
HpyAV	CCTTC	6 cut(s)	98, 1459, 1620, 1649, 2293, 2305
HpyCH4III	ACNGT	2 cut(s)	226, 1742
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	9 cut(s)	166, 213, 248, 293, 608, 1193, 2255, 2336, 2345
HpyF3I	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1937, 2061, 2086, 2157, 2285
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	845
Kpn2I	TCCGGA	1 cut(s)	2022
Kzo9I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	7 cut(s)	25, 48, 56, 118, 126, 157, 1984
LweI	GCATC	5 cut(s)	564, 763, 1210, 1831, 2080
MabI	ACCWGGT	1 cut(s)	1543
MaeI	CTAG	5 cut(s)	428, 584, 815, 867, 2250
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	196, 268, 1165
MalI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1858, 2151
MboI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	4 cut(s)	985, 1363, 1856, 2149
MhlI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2087
MlyI	GAGTC	2 cut(s)	1484, 1982
MmeI	TCCRAC	2 cut(s)	26, 1276
MroI	TCCGGA	1 cut(s)	2022
MroXI	GAANNNNTTC	1 cut(s)	1010
MslI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2419
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2023
MspR9I	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	3 cut(s)	676, 1335, 2105
MvaI	CCWGG	3 cut(s)	479, 1193, 1545
MwoI	GCNNNNNNNGC	9 cut(s)	166, 213, 248, 293, 608, 1193, 2255, 2336, 2345
NciI	CCSGG	3 cut(s)	101, 248, 284
NdeII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
NheI	GCTAGC	1 cut(s)	866
NlaIV	GGNNCC	3 cut(s)	27, 1212, 1974
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	3 cut(s)	196, 268, 1165
NspI	RCATGY	2 cut(s)	371, 1487
PaeR7I	CTCGAG	1 cut(s)	2355
PceI	AGGCCT	2 cut(s)	1196, 2283
PciI	ACATGT	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	3 cut(s)	676, 1335, 2105
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	3 cut(s)	186, 544, 2113
PflMI	CCANNNNNTGG	1 cut(s)	1207
PleI	GAGTC	2 cut(s)	1484, 1982
PpsI	GAGTC	2 cut(s)	1484, 1982
PpuMI	RGGWCCY	2 cut(s)	235, 1973
PscI	ACATGT	1 cut(s)	1483
PshBI	ATTAAT	1 cut(s)	822
Psp124BI	GAGCTC	4 cut(s)	53, 123, 162, 2087
Psp5II	RGGWCCY	2 cut(s)	235, 1973
Psp6I	CCWGG	3 cut(s)	477, 1191, 1543
PspGI	CCWGG	3 cut(s)	477, 1191, 1543
PspN4I	GGNNCC	3 cut(s)	27, 1212, 1974
PspPI	GGNCC	4 cut(s)	235, 286, 295, 1973
PspPPI	RGGWCCY	2 cut(s)	235, 1973
PstI	CTGCAG	2 cut(s)	897, 1186
PsuI	RGATCY	4 cut(s)	985, 1363, 1856, 2149
RsaI	GTAC	7 cut(s)	134, 859, 949, 1033, 1530, 1542, 2243
RsaNI	GTAC	7 cut(s)	133, 858, 948, 1032, 1529, 1541, 2242
RseI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2419
SacI	GAGCTC	4 cut(s)	53, 123, 162, 2087
SapI	GCTCTTC	1 cut(s)	167
Sau3AI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1856, 2149
Sau96I	GGNCC	4 cut(s)	235, 286, 295, 1973
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	2 cut(s)	1484, 1982
ScrFI	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
SduI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2087
SexAI	ACCWGGT	1 cut(s)	1543
SfaNI	GCATC	5 cut(s)	564, 763, 1210, 1831, 2080
SfcI	CTRYAG	3 cut(s)	578, 893, 1182
SfiI	GGCCNNNNNGGCC	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	2355
SinI	GGWCC	2 cut(s)	235, 1973
SlaI	CTCGAG	1 cut(s)	2355
SmiMI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2419
SmlI	CTYRAG	2 cut(s)	375, 2355
SmoI	CTYRAG	2 cut(s)	375, 2355
SseBI	AGGCCT	2 cut(s)	1196, 2283
SsiI	CCGC	4 cut(s)	207, 210, 336, 1775
SspMI	CTAG	5 cut(s)	428, 584, 815, 867, 2250
SstI	GAGCTC	4 cut(s)	53, 123, 162, 2087
StuI	AGGCCT	2 cut(s)	1196, 2283
StyD4I	CCNGG	6 cut(s)	99, 246, 282, 477, 1191, 1543
StyI	CCWWGG	2 cut(s)	231, 2190
TaaI	ACNGT	2 cut(s)	226, 1742
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	704, 1084, 1991, 2356
TatI	WGTACW	5 cut(s)	132, 947, 1031, 1528, 2241
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	186, 544, 2113
TscAI	CASTG	6 cut(s)	1174, 1404, 1630, 1651, 1681, 1747
TseFI	GTSAC	3 cut(s)	196, 268, 1165
Tsp45I	GTSAC	3 cut(s)	196, 268, 1165
TspGWI	ACGGA	3 cut(s)	131, 184, 896
TspRI	CASTG	6 cut(s)	1174, 1404, 1630, 1651, 1681, 1747
Van91I	CCANNNNNTGG	1 cut(s)	1207
VneI	GTGCAC	1 cut(s)	1272
VpaK11BI	GGWCC	2 cut(s)	235, 1973
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	6 cut(s)	995, 1256, 1317, 1826, 1892, 2395
XceI	RCATGY	2 cut(s)	371, 1487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1966
XhoI	CTCGAG	1 cut(s)	2355
XmnI	GAANNNNTTC	1 cut(s)	1010
XspI	CTAG	5 cut(s)	428, 584, 815, 867, 2250
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.