Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Forward (+)

6038505 .. 6043207

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09000.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGGCGCGTTTTATTATTAACCGTACGATGGGTTTAAGGTTTTATCAATCTTGCCGTCTTCTCCTTAACACTAAACCCCCTAAAATGAATCCTCGCCGCGCCAGCATTGGAATGTCGCCGGAGGCACTCTTGGCGTCGGGTCGGGGCTCCGAGAAGATGAGCTTGCCCGCGCTTCAGTCGAAGATGAAGTGCGACCCGGAAGGGTACTTGCAGGAGCTCCAGCTGGTGTATAACCAGTTCAAATCGGCCGTGGATCTCTTCGAAAAACAATTAGAGATGGGGTTCACGTCCGTCAGCGGCGTCGGCAACGACCCGGCCGTCGCGAAGGACCTTGGCGACCGGGCGATGTTCTTGGCTCACGTCACCCCCTTTTACCCGACCCAGATGGCCTATTTCCCCGTCGAGCTCTCCCAGTTTCTCTGCTCCACCGCCCGAAAACTCCCCTCGGGGCTCCGGCTGCATGTCACCCAAGCTCTCATTCTTCTCATGAATCGAAAGATGGTTGATTTGGGAGACACTATAGCTATGTTCATGGAGCTGCAGACGTATGGGGATAAGCCTTTGAGAAAGCTGGCATTTTCTCATGTGGTTCATAGCATAAAGCGAATGAATCAGAAGCATAAGAACGAAGCGAAGAATCGGGCACTTCAAAATGTTGTTTTTGAGATGCTACGGCAAGAGGATGAAACAAAAGCAAAGAGAGCGCTTATCACGCTACGAGAGCTTCACCAGAGAAAGCAGTGGTTTGATGAAAGAACAGCAAATGCGATTTGTACTGCGTGCTTTCATCCATCTTCAAGGATAATGATTGCTTGCCTCTCATTTCTGCTTGATTACGAGAAGTTTGAAGACGATGATAGTGATGCATCAAGTAGTGAAGATGAAGGTCCTCACACATCTCAAGTAGTCCTTAATAGAGAGTCTATTTATAAGGCACACCATCAAGGTACAATTGCTAGCAAGAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATGCGTAGTATGAAGAAACAGCAGCGCCTATCATCAGAAAAAACTAATTCAAATTATCATACGCCACTTAACCATTTGCAAGATCCGCAGGGATTTGCTGAGAAACTATTCTCCCGCATTCAAACCTGCAATGAACGATTTGAGGTCAAGATGATGATGTTGAAAGTAATTGCTCGCACGATTGGGCTTCACCGCTTGATTTTGTTGAACTTTTATCCTTTCCTTCAGAAATATATTCAGCCTCACCAACGCGATGTCACAAGTTTACTTGCTGCAGCAGTTCAGGCTTGCCATGATATGGTTCCTCCTGATGCGGTTCAACCACTGTTCAAACAACTAGTGAATCAATTTGTACATGATCGCTCACGTCCAGAGGCCATAGCTGTTGGACTGAATGTAACAAGGGAGTTATGTTTACGGATTCCATTGTTGATGACCGAAGAGTTGCTGCAAGATCTTGCATTATATAAGAAATCACATGAGAAAGCAGTTTCAATAGCAGCGCGCTCACTTATCAGTTTATTCAGAGAGATTTGCCCATCACTGTTGATTAAGAAGGACCGTGGACGCCCCACTAACCCCAAGGCAAAACCAAAAGCTTATGGAGAAGTCAGTGTACTCAGCAATGTTCCTGGTGTTGAACTGCTAGAAGAAGATGACGGCAATGAGGACAGTGATGATGCTGATGAACATTCATTCAGCGGCACTGATGATGATAAAGATGATGATCTTGATCGCGATGAGATGGTTGCTTCCAGTGATGATGATGACGACCAGATGGACAACAGCGACAGTGGAAGCGAAGATGATGGAATAGAAGAGGATGCCATGGTAGCTGAAGATGAAGATGGTGATGATAGTATAGATGATAATGACAGTGATGTCAATGGGAGTGAGGATGACGATGAGGATGAGGAAGAAGAAGAGAATGAGGAGGAAGAATCCGACAACGATGATGCTAAAGGTAGTGGAAATGGAGTAAAAGACAACAAAGCAAAAAAGAGGAAGTTTGCCGATTTTGATAAACAACTTAATCATGTTGAATCAAGTCTTCGGGCTTTGAAGAGATTGGCCAAAGAGAACATGGAGCCTGCTTCACTGGACTCAGCTGATGGTTTTCTTTCTAACGAGGACTTCCAGAGGATTAAGGAGTTAAAGGCAAAGAAGGAAGCCCAAATTGCTTTGACACGGCAGGGATTATTGAAGAAGGGCGCAGACGCCAAGTCACCCGCATTCAAGATTCCCAGCTCATCTGAACTGAGCAGTAAGCGAGTAGATCCTGCAAAGCTTGAAGTCCACGTAAAGAAAAGGATGAGCAAGGAGGAGAGATTGGCATTAGTGAGAGCAGGGCGGGAGGAGAGAGGGAAGTACCAGGCTCGAGCCGCCATAAAACAGAAGAAGACGGGAGGTATGAGCAACAAGCAGAAGGAACACAAAAAGCAAATGCCTATGGCTGCAAAGAGGGCAAAGGTTGCTAAATCTCGCGTGGATAAAAGGAAGCAGCAGCAGCGATCTGGCAAACAATTCCGAGGGAAGAAGGCTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

848

Amino Acids

95.92

Weight (kDa)

7.87

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
AasI	GACNNNNNNGTC	2 cut(s)	317, 1874
Acc36I	ACCTGC	1 cut(s)	1127
AccB7I	CCANNNNNTGG	1 cut(s)	1291
AccII	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
AclWI	GGATC	3 cut(s)	261, 1070, 2264
AcoI	YGGCCR	3 cut(s)	246, 315, 2064
AcuI	CTGAAG	3 cut(s)	158, 1202, 1851
AcyI	GRCGYC	4 cut(s)	134, 300, 1561, 2211
AfaI	GTAC	7 cut(s)	25, 206, 775, 949, 1347, 1611, 2363
AfeI	AGCGCT	1 cut(s)	705
AfiI	CCNNNNNNNGG	2 cut(s)	28, 1291
AhdI	GACNNNNNGTC	1 cut(s)	2215
AhlI	ACTAGT	1 cut(s)	1330
AjiI	CACGTC	3 cut(s)	288, 361, 1361
AjnI	CCWGG	2 cut(s)	1624, 2364
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
Alw21I	GWGCWC	2 cut(s)	219, 408
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	3 cut(s)	261, 1070, 2264
Ama87I	CYCGRG	2 cut(s)	445, 2370
Aor51HI	AGCGCT	1 cut(s)	705
AoxI	GGCC	5 cut(s)	246, 315, 387, 1368, 2064
Asp700I	GAANNNNTTC	1 cut(s)	1100
AspLEI	GCGC	8 cut(s)	7, 101, 172, 706, 1020, 1498, 1500, 2207
AspS9I	GGNCC	3 cut(s)	328, 887, 1552
AsuC2I	CCSGG	3 cut(s)	197, 314, 341
AsuHPI	GGTGA	7 cut(s)	355, 457, 719, 1175, 1229, 1856, 2211
AsuII	TTCGAA	1 cut(s)	261
AsuNHI	GCTAGC	1 cut(s)	956
AvaI	CYCGRG	2 cut(s)	445, 2370
AvaII	GGWCC	3 cut(s)	328, 887, 1552
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	2066
BanII	GRGCYC	4 cut(s)	149, 219, 408, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	1593, 1625
BbsI	GAAGAC	4 cut(s)	50, 855, 2036, 2399
Bbv12I	GWGCWC	2 cut(s)	219, 408
BceAI	ACGGC	6 cut(s)	39, 233, 302, 689, 1669, 2198
BciT130I	CCWGG	2 cut(s)	1626, 2366
BcnI	CCSGG	3 cut(s)	197, 314, 341
BcoDI	GTCTC	1 cut(s)	507
BcuI	ACTAGT	1 cut(s)	1330
BfaI	CTAG	3 cut(s)	957, 1331, 1640
BfmI	CTRYAG	4 cut(s)	519, 539, 983, 1266
BfoI	RGCGCY	2 cut(s)	707, 1021
BfuAI	ACCTGC	1 cut(s)	1127
BglII	AGATCT	1 cut(s)	1447
Bme1390I	CCNGG	5 cut(s)	197, 314, 341, 1626, 2366
Bme18I	GGWCC	3 cut(s)	328, 887, 1552
BmeRI	GACNNNNNGTC	1 cut(s)	2215
BmeT110I	CYCGRG	2 cut(s)	445, 2370
BmgBI	CACGTC	3 cut(s)	288, 361, 1361
BmgT120I	GGNCC	3 cut(s)	328, 887, 1552
BmiI	GGNNCC	4 cut(s)	148, 452, 1296, 2082
BmrFI	CCNGG	5 cut(s)	197, 314, 341, 1626, 2366
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	7 cut(s)	657, 853, 875, 1294, 1663, 1807, 1939
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	4 cut(s)	50, 855, 2036, 2399
BpmI	CTGGAG	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	885
BpuMI	CCSGG	3 cut(s)	197, 314, 341
BsaAI	YACGTR	1 cut(s)	2293
BsaBI	GATNNNNATC	2 cut(s)	1719, 1725
BsaHI	GRCGYC	4 cut(s)	134, 300, 1561, 2211
BsaJI	CCNNGG	7 cut(s)	249, 331, 444, 1555, 1575, 1821, 2521
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 1291
Bse1I	ACTGG	4 cut(s)	235, 412, 1749, 2097
Bse3DI	GCAATG	3 cut(s)	1129, 1624, 1663
Bse8I	GATNNNNATC	2 cut(s)	1719, 1725
BseBI	CCWGG	2 cut(s)	1626, 2366
BseDI	CCNNGG	7 cut(s)	249, 331, 444, 1555, 1575, 1821, 2521
BseGI	GGATG	6 cut(s)	688, 787, 1822, 1897, 1909, 2310
BseJI	GATNNNNATC	2 cut(s)	1719, 1725
BseLI	CCNNNNNNNGG	2 cut(s)	28, 1291
BseMI	GCAATG	3 cut(s)	1129, 1624, 1663
BseMII	CTCAG	4 cut(s)	1083, 1627, 2112, 2243
BseNI	ACTGG	4 cut(s)	235, 412, 1749, 2097
BsePI	GCGCGC	1 cut(s)	1496
BseRI	GAGGAG	3 cut(s)	1940, 2330, 2363
BseSI	GKGCMC	1 cut(s)	646
BseX3I	CGGCCG	2 cut(s)	246, 315
BseYI	CCCAGC	1 cut(s)	2237
Bsh1236I	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
Bsh1285I	CGRYCG	3 cut(s)	249, 318, 340
BshFI	GGCC	5 cut(s)	248, 317, 389, 1370, 2066
BsiEI	CGRYCG	3 cut(s)	249, 318, 340
BsiHKAI	GWGCWC	2 cut(s)	219, 408
BsiHKCI	CYCGRG	2 cut(s)	445, 2370
BsiSI	CCGG	5 cut(s)	119, 197, 314, 340, 454
BsiWI	CGTACG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	28, 1291
BsmAI	GTCTC	1 cut(s)	507
BsmI	GAATGC	2 cut(s)	1110, 2225
BsnI	GGCC	5 cut(s)	248, 317, 389, 1370, 2066
BsoBI	CYCGRG	2 cut(s)	445, 2370
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	149, 219, 408, 453, 646
Bsp1407I	TGTACA	1 cut(s)	1345
Bsp143I	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
Bsp19I	CCATGG	1 cut(s)	1821
Bsp68I	TCGCGA	2 cut(s)	323, 1731
BspANI	GGCC	5 cut(s)	248, 317, 389, 1370, 2066
BspCNI	CTCAG	4 cut(s)	1084, 1626, 2111, 2244
BspFNI	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	148, 452, 1296, 2082
BspMAI	CTGCAG	3 cut(s)	543, 987, 1270
BspMI	ACCTGC	1 cut(s)	1127
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	3 cut(s)	261, 1070, 2264
BspT104I	TTCGAA	1 cut(s)	261
BsrDI	GCAATG	3 cut(s)	1129, 1624, 1663
BsrGI	TGTACA	1 cut(s)	1345
BsrI	ACTGG	4 cut(s)	235, 412, 1749, 2097
BssECI	CCNNGG	7 cut(s)	249, 331, 444, 1555, 1575, 1821, 2521
BssHII	GCGCGC	1 cut(s)	1496
BssMI	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
BssNI	GRCGYC	4 cut(s)	134, 300, 1561, 2211
BssT1I	CCWWGG	3 cut(s)	331, 1575, 1821
Bst2UI	CCWGG	2 cut(s)	1626, 2366
Bst4CI	ACNGT	7 cut(s)	23, 1320, 1539, 1556, 1667, 1787, 1871
Bst6I	CTCTTC	5 cut(s)	263, 1428, 1806, 1911, 2051
BstACI	GRCGYC	4 cut(s)	134, 300, 1561, 2211
BstAPI	GCANNNNNTGC	1 cut(s)	2465
BstAUI	TGTACA	1 cut(s)	1345
BstBAI	YACGTR	1 cut(s)	2293
BstBI	TTCGAA	1 cut(s)	261
BstDEI	CTNAG	4 cut(s)	1092, 1613, 2098, 2252
BstDSI	CCRYGG	3 cut(s)	249, 1555, 1821
BstF5I	GGATG	6 cut(s)	688, 787, 1822, 1897, 1909, 2310
BstFNI	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
BstH2I	RGCGCY	2 cut(s)	707, 1021
BstHHI	GCGC	8 cut(s)	7, 101, 172, 706, 1020, 1498, 1500, 2207
BstKTI	GATC	8 cut(s)	256, 1078, 1354, 1450, 1723, 1729, 2272, 2507
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
BstMCI	CGRYCG	3 cut(s)	249, 318, 340
BstNI	CCWGG	2 cut(s)	1626, 2366
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	5 cut(s)	195, 312, 339, 1624, 2364
BstSFI	CTRYAG	4 cut(s)	519, 539, 983, 1266
BstSLI	GKGCMC	1 cut(s)	646
BstUI	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
BstV2I	GAAGAC	4 cut(s)	50, 855, 2036, 2399
BstX2I	RGATCY	4 cut(s)	253, 1075, 1447, 2269
BstYI	RGATCY	4 cut(s)	253, 1075, 1447, 2269
BstZI	CGGCCG	2 cut(s)	246, 315
BsuRI	GGCC	5 cut(s)	248, 317, 389, 1370, 2066
BtgI	CCRYGG	3 cut(s)	249, 1555, 1821
BtgZI	GCGATG	3 cut(s)	359, 1260, 1746
BtrI	CACGTC	3 cut(s)	288, 361, 1361
BtsCI	GGATG	6 cut(s)	688, 787, 1822, 1897, 1909, 2310
BtsI	GCAGTG	1 cut(s)	746
BtuMI	TCGCGA	2 cut(s)	323, 1731
BveI	ACCTGC	1 cut(s)	1127
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	8 cut(s)	7, 101, 172, 706, 1020, 1498, 1500, 2207
Cfr13I	GGNCC	3 cut(s)	328, 887, 1552
CseI	GACGC	4 cut(s)	123, 289, 1569, 2219
Csp6I	GTAC	7 cut(s)	24, 205, 774, 948, 1346, 1610, 2362
CviQI	GTAC	7 cut(s)	24, 205, 774, 948, 1346, 1610, 2362
DdeI	CTNAG	4 cut(s)	1092, 1613, 2098, 2252
DpnI	GATC	8 cut(s)	255, 1077, 1353, 1449, 1722, 1728, 2271, 2506
DpnII	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
DrdI	GACNNNNNNGTC	2 cut(s)	317, 1874
DriI	GACNNNNNGTC	1 cut(s)	2215
DseDI	GACNNNNNNGTC	2 cut(s)	317, 1874
EaeI	YGGCCR	3 cut(s)	246, 315, 2064
EagI	CGGCCG	2 cut(s)	246, 315
Eam1104I	CTCTTC	5 cut(s)	263, 1428, 1806, 1911, 2051
Eam1105I	GACNNNNNGTC	1 cut(s)	2215
EarI	CTCTTC	5 cut(s)	263, 1428, 1806, 1911, 2051
Ecl136II	GAGCTC	2 cut(s)	217, 406
EclXI	CGGCCG	2 cut(s)	246, 315
Eco130I	CCWWGG	3 cut(s)	331, 1575, 1821
Eco24I	GRGCYC	4 cut(s)	149, 219, 408, 453
Eco47I	GGWCC	3 cut(s)	328, 887, 1552
Eco47III	AGCGCT	1 cut(s)	705
Eco52I	CGGCCG	2 cut(s)	246, 315
Eco53kI	GAGCTC	2 cut(s)	217, 406
Eco57I	CTGAAG	3 cut(s)	158, 1202, 1851
Eco88I	CYCGRG	2 cut(s)	445, 2370
EcoICRI	GAGCTC	2 cut(s)	217, 406
EcoO109I	RGGNCCY	2 cut(s)	328, 887
EcoRII	CCWGG	2 cut(s)	1624, 2364
EcoT14I	CCWWGG	3 cut(s)	331, 1575, 1821
EcoT22I	ATGCAT	1 cut(s)	868
EcoT38I	GRGCYC	4 cut(s)	149, 219, 408, 453
ErhI	CCWWGG	3 cut(s)	331, 1575, 1821
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 894, 926
FauI	CCCGC	4 cut(s)	175, 1115, 2230, 2337
FokI	GGATG	6 cut(s)	695, 774, 1829, 1904, 1916, 2317
FriOI	GRGCYC	4 cut(s)	149, 219, 408, 453
FspBI	CTAG	3 cut(s)	957, 1331, 1640
GlaI	GCGC	8 cut(s)	6, 100, 171, 705, 1019, 1497, 1499, 2206
GsaI	CCCAGC	1 cut(s)	2241
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	2 cut(s)	707, 1021
HaeIII	GGCC	5 cut(s)	248, 317, 389, 1370, 2066
HapII	CCGG	5 cut(s)	119, 197, 314, 340, 454
HgaI	GACGC	4 cut(s)	123, 289, 1569, 2219
HhaI	GCGC	8 cut(s)	7, 101, 172, 706, 1020, 1498, 1500, 2207
Hin1I	GRCGYC	4 cut(s)	134, 300, 1561, 2211
Hin6I	GCGC	8 cut(s)	5, 99, 170, 704, 1018, 1496, 1498, 2205
HinP1I	GCGC	8 cut(s)	5, 99, 170, 704, 1018, 1496, 1498, 2205
HindIII	AAGCTT	2 cut(s)	1590, 2279
HpaII	CCGG	5 cut(s)	119, 197, 314, 340, 454
HphI	GGTGA	7 cut(s)	355, 457, 719, 1175, 1229, 1856, 2211
Hpy166II	GTNNAC	6 cut(s)	285, 1259, 1409, 1559, 1610, 2290
Hpy188I	TCNGA	8 cut(s)	151, 615, 1030, 1221, 1520, 1939, 2248, 2522
Hpy188III	TCNNGA	9 cut(s)	322, 487, 1141, 1301, 1364, 1724, 1730, 2131, 2230
Hpy8I	GTNNAC	6 cut(s)	285, 1259, 1409, 1559, 1610, 2290
Hpy99I	CGWCG	4 cut(s)	139, 305, 323, 404
HpyAV	CCTTC	9 cut(s)	194, 319, 878, 1226, 1543, 2152, 2194, 2413, 2524
HpyCH4III	ACNGT	7 cut(s)	23, 1320, 1539, 1556, 1667, 1787, 1871
HpyCH4IV	ACGT	5 cut(s)	287, 360, 545, 1360, 2292
HpyF3I	CTNAG	4 cut(s)	1092, 1613, 2098, 2252
HpySE526I	ACGT	5 cut(s)	287, 360, 545, 1360, 2292
Hsp92I	GRCGYC	4 cut(s)	134, 300, 1561, 2211
HspAI	GCGC	8 cut(s)	5, 99, 170, 704, 1018, 1496, 1498, 2205
Kzo9I	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
LmnI	GCTCC	7 cut(s)	152, 214, 222, 428, 456, 535, 2080
LweI	GCATC	7 cut(s)	657, 853, 875, 1294, 1663, 1807, 1939
MaeI	CTAG	3 cut(s)	957, 1331, 1640
MaeII	ACGT	5 cut(s)	287, 360, 545, 1360, 2292
MaeIII	GTNAC	5 cut(s)	361, 463, 1249, 1390, 2217
MalI	GATC	8 cut(s)	255, 1077, 1353, 1449, 1722, 1728, 2271, 2506
MboI	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	4 cut(s)	253, 1075, 1447, 2269
MhlI	GDGCHC	5 cut(s)	149, 219, 408, 453, 646
MlsI	TGGCCA	1 cut(s)	2066
MluCI	AATT	8 cut(s)	269, 951, 1039, 1045, 1161, 1340, 2169, 2516
MluNI	TGGCCA	1 cut(s)	2066
MlyI	GAGTC	2 cut(s)	929, 2090
MmeI	TCCRAC	2 cut(s)	1360, 1962
Mox20I	TGGCCA	1 cut(s)	2066
Mph1103I	ATGCAT	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	1100
MscI	TGGCCA	1 cut(s)	2066
MseI	TTAA	9 cut(s)	18, 35, 66, 912, 1062, 1545, 2025, 2139, 2147
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	2066
MspA1I	CMGCKG	4 cut(s)	223, 297, 1695, 2102
MspI	CCGG	5 cut(s)	119, 197, 314, 340, 454
MspR9I	CCNGG	5 cut(s)	197, 314, 341, 1626, 2366
MunI	CAATTG	1 cut(s)	951
Mva1269I	GAATGC	2 cut(s)	1110, 2225
MvaI	CCWGG	2 cut(s)	1626, 2366
MvnI	CGCG	8 cut(s)	7, 99, 170, 323, 1245, 1498, 1731, 2478
NciI	CCSGG	3 cut(s)	197, 314, 341
NcoI	CCATGG	1 cut(s)	1821
NdeII	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
NheI	GCTAGC	1 cut(s)	956
NlaIV	GGNNCC	4 cut(s)	148, 452, 1296, 2082
NmuCI	GTSAC	4 cut(s)	361, 463, 1249, 2217
NruI	TCGCGA	2 cut(s)	323, 1731
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	2370
PagI	TCATGA	1 cut(s)	486
PauI	GCGCGC	1 cut(s)	1496
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	2 cut(s)	1110, 2225
PdmI	GAANNNNTTC	1 cut(s)	1100
PfeI	GAWTC	9 cut(s)	88, 490, 610, 637, 1336, 1414, 1934, 2036, 2233
Pfl23II	CGTACG	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	1291
PleI	GAGTC	2 cut(s)	928, 2090
PpsI	GAGTC	2 cut(s)	928, 2090
Ppu21I	YACGTR	1 cut(s)	2293
PpuMI	RGGWCCY	2 cut(s)	328, 887
PsiI	TTATAA	1 cut(s)	930
Psp124BI	GAGCTC	2 cut(s)	219, 408
Psp5II	RGGWCCY	2 cut(s)	328, 887
Psp6I	CCWGG	2 cut(s)	1624, 2364
PspFI	CCCAGC	1 cut(s)	2237
PspGI	CCWGG	2 cut(s)	1624, 2364
PspLI	CGTACG	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	148, 452, 1296, 2082
PspPI	GGNCC	3 cut(s)	328, 887, 1552
PspPPI	RGGWCCY	2 cut(s)	328, 887
PspXI	VCTCGAGB	1 cut(s)	2370
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PstI	CTGCAG	3 cut(s)	543, 987, 1270
PsuI	RGATCY	4 cut(s)	253, 1075, 1447, 2269
PteI	GCGCGC	1 cut(s)	1496
PvuII	CAGCTG	2 cut(s)	223, 2102
RruI	TCGCGA	2 cut(s)	323, 1731
RsaI	GTAC	7 cut(s)	25, 206, 775, 949, 1347, 1611, 2363
RsaNI	GTAC	7 cut(s)	24, 205, 774, 948, 1346, 1610, 2362
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	2 cut(s)	219, 408
SaqAI	TTAA	9 cut(s)	18, 35, 66, 912, 1062, 1545, 2025, 2139, 2147
Sau3AI	GATC	8 cut(s)	253, 1075, 1351, 1447, 1720, 1726, 2269, 2504
Sau96I	GGNCC	3 cut(s)	328, 887, 1552
SchI	GAGTC	2 cut(s)	929, 2090
ScrFI	CCNGG	5 cut(s)	197, 314, 341, 1626, 2366
SduI	GDGCHC	5 cut(s)	149, 219, 408, 453, 646
SfaNI	GCATC	7 cut(s)	657, 853, 875, 1294, 1663, 1807, 1939
SfcI	CTRYAG	4 cut(s)	519, 539, 983, 1266
Sfr274I	CTCGAG	1 cut(s)	2370
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	3 cut(s)	328, 887, 1552
SlaI	CTCGAG	1 cut(s)	2370
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	900, 2370
SmoI	CTYRAG	2 cut(s)	900, 2370
SpeI	ACTAGT	1 cut(s)	1330
Sse9I	AATT	8 cut(s)	269, 951, 1039, 1045, 1161, 1340, 2169, 2516
SspMI	CTAG	3 cut(s)	957, 1331, 1640
SstI	GAGCTC	2 cut(s)	219, 408
StyD4I	CCNGG	5 cut(s)	195, 312, 339, 1624, 2364
StyI	CCWWGG	3 cut(s)	331, 1575, 1821
TaaI	ACNGT	7 cut(s)	23, 1320, 1539, 1556, 1667, 1787, 1871
TaiI	ACGT	5 cut(s)	290, 363, 548, 1363, 2295
TaqI	TCGA	5 cut(s)	179, 261, 402, 493, 2371
TaqII	GACCGA	1 cut(s)	1445
TasI	AATT	8 cut(s)	269, 951, 1039, 1045, 1161, 1340, 2169, 2516
TatI	WGTACW	3 cut(s)	773, 1345, 1609
TauI	GCSGC	4 cut(s)	99, 300, 1698, 2378
TfiI	GAWTC	9 cut(s)	88, 490, 610, 637, 1336, 1414, 1934, 2036, 2233
Tru1I	TTAA	9 cut(s)	18, 35, 66, 912, 1062, 1545, 2025, 2139, 2147
Tru9I	TTAA	9 cut(s)	18, 35, 66, 912, 1062, 1545, 2025, 2139, 2147
TseFI	GTSAC	4 cut(s)	361, 463, 1249, 2217
Tsp45I	GTSAC	4 cut(s)	361, 463, 1249, 2217
TspGWI	ACGGA	2 cut(s)	280, 1426
Van91I	CCANNNNNTGG	1 cut(s)	1291
VpaK11BI	GGWCC	3 cut(s)	328, 887, 1552
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2074
XhoI	CTCGAG	1 cut(s)	2370
XmnI	GAANNNNTTC	1 cut(s)	1100
XspI	CTAG	3 cut(s)	957, 1331, 1640
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.