Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Reverse (-)

54967851 .. 54972814

Gene Structure 4964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGAGTTCCCACTACATGACGCCGGAGCCACTCTCGGCCTCGGGTCGGAGCTCCGAGAAGATGAGCCTGCCGACACTTCAATCCAAGATGAAGTGCGACCCGGAAGGCTACGAGACGGAGCTCCTCCTTGTGTACAACCAATTCAAGTCGTCGCTGGAGCTCTTCAAGCAACAAGCCGATCTCGGATTCAAGTCCGTCACCGGCAGCGGCGGCAGCGACCCCACCGTCGCCAAGGACCTCGCCGACCGGGCATTGTTTCTCGCCCACGTCACCCCCTTCTACCCGGCCCAATTGGCCCAATTCCCCTCACAGCTCTCCGAGTTTCTCCACTCCTCCGCCCGAACGCTTCCCTCTGGTCTCAGATTGCATGTTGCTCAAGCTCTCATTCTTCTTATGAACAGAAAGATGGTGGATATTGCAGACAATCTAGGTTTGTTCATGGAGATACAGACTTATGGCGATAAGGCTTTAAAGACCCTGGCATACAATCATGTCATACATAGCATAAAGCGAATGAATATGAAGCATAAGAACGAAGCTAAGAATCGGGTGCTTCAGAATGTCTTGTTTCGGATGCTACAGCTAGAGGATGAAACAAAAGCAAAGAGAGCACTTATCACTCTACGTGAGCTTCACCGGAGAAAGGTGTGGTTTGATGAAAATACAGCAAACGCAATCTGCTCTGCATGTTTTCATCCATCGTCGAGGATAATGATTGCTTGTCTCTCATTTCTGCTTGATTACGAGAAGATTGAGGAGGAGGATGATAGTGATGCGTCAAGTAGTGATGAGGACACTCCTATTAAATCTCATCTAGCCATTAATAGAGAGGATATATATAAGGCGCACCATAAGGGTACACTTGCTAGCAAGAAGAAAAAGAAAGCAAAACTCCAGCGTGCCATCCGTAGCCTGAAAAAACAGCAACGCGTAACATCAGAAAAAAGTACTTCAAATTATCATACGCCACTTAATCATTTGAGAGATCCTCAGGAATTCGCTGAGAAGCTATTCTCCCGTCTTCAAAATAGTACCAGAGTTGAACGCTTTGAGGTCAAAATGATGATGTTGAAAGTAGTTGCTCGAACTATTGGGCTTCATCGCTTGGTTCTGTTGAACTTTTATCCTTATTTTATCAACTACATTACGCCTCATCAAAATGGTGTCACTGAATTACTCGCTGCAGCAGTCCAGGCGTGCCATGATATGGTTCCTCCTGATGCAGTTGAACCACTTTTCAAACAAATAGTGAACAAATTTATAGATGATCGTGCACAGCCAGAGGCCATAGCTGTTGGACTGAATACAACAAGGGAAATTTGTTTACGAATGCCTTTGTTGATGACAGAAGATTTGCTGCAAGATCTTGCATTATATAAGAAATCACATACAAAAGCAGTGTCGGTAGCAGCCCGTTCACTTATTGGCTTATTCAGAGAGCTTAACCCCTCGCTCCTGATTAAGAAGGATCGTGGTCGCCAACATGTTGACTCAAAGGCAAGGCCAAAAGCGTATGGAGAAGTCGATGTACTTAGCAATGTTCCTGGTCTTGATTTACTAAAACATGATGATGACAATGGGGAGAGTGATGATGATGATGATGATGATGATGATGATGAACCTTCAGTAAGGGGCACTGATGAGATGGTTGCTTCCAGTGATGATGAAGGCTTGCAAATAACCAACACTGATAGTGGAAGTGAAGATGACAGCATGATATCTGAAGATGGTGATGAGATTGATGAGAATGACAGTGATGTGAGTGGTGATGAGGATGAGGTGGAAATGGAGGATGAAGATGAGGATGAGGAAGAGAATACAGAGGATGAGGAGGAAGAATTTGACAATAATGATGCCAAAGATGGTGGATCTGGAGTAAAAGAAAACATAGCAAAAAAGAGGAAATTCACTGATTTTGATACACAACTTAATGACGCTGAAGCAAGTCTTAGGACTTTGAAGAGATTAGCCAAAGAAAATATGGGTCCTGCTCTATCAGACTTGACAGATGGTTTTCTTTCTAATGAGGACTTCCGGAGGATTAAGGAATTAAAGGCAAAGCAGCGATTGGCTCAGCAGGGGTTGTTGAAAAAGAGCTCAGATGCGAAGTCAACAGCGTTCAAGATTCCCACTTCTGATGAATTAAGCATTAAGCGAATAGATCCTGCTAAGCTTGAAGTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAGTGAAAGCGGGGAGGGAGGATAGAGGGAAGTACATGGCTAGAGCTGCTGTAAAACAGAAGAAGTCGGGAGGCCTGAGCAATAAGCAGAAGGAACATAAGAAGGCTATGCCACTTGTTGCAAAGAGGGCAAAGGTAGCTAAATCTCGAGTGGCAAAACGCAAAAAGCAGCAGCTTTCTGGCAAAAATTTCCGAGGGAAGAAAGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

811

Amino Acids

91.58

Weight (kDa)

6.47

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDA1_HEAT	PF08158	86 - 462	7.6e-129	SDA1, HEAT repeat
SDA1_C	PF21638	764 - 809	5.1e-07	SDA1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	1207
AccII	CGCG	1 cut(s)	930
AccIII	TCCGGA	1 cut(s)	2034
AciI	CCGC	4 cut(s)	207, 210, 336, 2231
AclWI	GGATC	4 cut(s)	980, 1476, 1876, 2156
AcsI	RAATTY	6 cut(s)	995, 1256, 1317, 1838, 1904, 2407
AcuI	CTGAAG	4 cut(s)	539, 1608, 1743, 1959
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	6 cut(s)	134, 859, 949, 1033, 1530, 2255
AfiI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
AflIII	ACRYGT	2 cut(s)	928, 1483
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	477, 1191, 1543
Alw21I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2099
Alw26I	GTCTC	3 cut(s)	107, 362, 728
Alw44I	GTGCAC	1 cut(s)	1272
AlwI	GGATC	4 cut(s)	980, 1476, 1876, 2156
Ama87I	CYCGRG	2 cut(s)	40, 2367
Aor13HI	TCCGGA	1 cut(s)	2034
AoxI	GGCC	6 cut(s)	36, 285, 294, 1284, 1502, 2293
ApaLI	GTGCAC	1 cut(s)	1272
ApoI	RAATTY	6 cut(s)	995, 1256, 1317, 1838, 1904, 2407
ArsI	GACNNNNNNTTYG	4 cut(s)	1336, 1368, 1385, 1417
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	1 cut(s)	1010
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	4 cut(s)	235, 286, 295, 1985
AsuC2I	CCSGG	3 cut(s)	101, 248, 284
AsuHPI	GGTGA	5 cut(s)	190, 262, 626, 1742, 1778
AsuNHI	GCTAGC	1 cut(s)	866
AvaI	CYCGRG	2 cut(s)	40, 2367
AvaII	GGWCC	2 cut(s)	235, 1985
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	2 cut(s)	1276, 1637
BanII	GRGCYC	4 cut(s)	53, 123, 162, 2099
BarI	GAAGNNNNNNTAC	2 cut(s)	1512, 1544
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2099
BccI	CCATC	7 cut(s)	400, 706, 911, 1639, 1721, 1856, 2003
BciT130I	CCWGG	3 cut(s)	479, 1193, 1545
BcnI	CCSGG	3 cut(s)	101, 248, 284
BcoDI	GTCTC	3 cut(s)	107, 362, 728
BfaI	CTAG	5 cut(s)	428, 584, 815, 867, 2262
BfmI	CTRYAG	2 cut(s)	578, 1182
BglI	GCCNNNNNGGC	2 cut(s)	248, 293
BglII	AGATCT	1 cut(s)	1363
BlpI	GCTNAGC	2 cut(s)	2073, 2169
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
Bme18I	GGWCC	2 cut(s)	235, 1985
BmeT110I	CYCGRG	2 cut(s)	40, 2367
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	235, 286, 295, 1985
BmiI	GGNNCC	3 cut(s)	27, 1212, 1986
BmrFI	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
BmsI	GCATC	5 cut(s)	564, 763, 1210, 1843, 2092
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	1013
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 973, 1005
BpmI	CTGGAG	3 cut(s)	176, 878, 1893
Bpu10I	CCTNAGC	1 cut(s)	2297
Bpu1102I	GCTNAGC	2 cut(s)	2073, 2169
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	101, 248, 284
BsaAI	YACGTR	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	5 cut(s)	39, 231, 477, 2202, 2413
BsaWI	WCCGGW	2 cut(s)	636, 2034
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	1656
Bse21I	CCTNAGG	1 cut(s)	990
Bse3DI	GCAATG	1 cut(s)	1543
BseAI	TCCGGA	1 cut(s)	2034
BseBI	CCWGG	3 cut(s)	479, 1193, 1545
BseDI	CCNNGG	5 cut(s)	39, 231, 477, 2202, 2413
BseGI	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1780, 1798, 1810, 1831
BseLI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
BseMI	GCAATG	1 cut(s)	1543
BseMII	CTCAG	6 cut(s)	373, 993, 1004, 2087, 2112, 2288
BseNI	ACTGG	1 cut(s)	1656
BseRI	GAGGAG	6 cut(s)	113, 322, 770, 773, 1844, 2222
BseSI	GKGCMC	2 cut(s)	1276, 1637
Bsh1236I	CGCG	1 cut(s)	930
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	6 cut(s)	38, 287, 296, 1286, 1504, 2295
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2099
BsiHKCI	CYCGRG	2 cut(s)	40, 2367
BsiSI	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2035
BslI	CCNNNNNNNGG	3 cut(s)	45, 643, 1207
BsmAI	GTCTC	3 cut(s)	107, 362, 728
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	1335
BsnI	GGCC	6 cut(s)	38, 287, 296, 1286, 1504, 2295
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	40, 2367
Bsp1286I	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1637, 2099
Bsp13I	TCCGGA	1 cut(s)	2034
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
Bsp1720I	GCTNAGC	2 cut(s)	2073, 2169
BspACI	CCGC	4 cut(s)	207, 210, 336, 2231
BspANI	GGCC	6 cut(s)	38, 287, 296, 1286, 1504, 2295
BspCNI	CTCAG	6 cut(s)	372, 994, 1003, 2086, 2111, 2289
BspEI	TCCGGA	1 cut(s)	2034
BspFNI	CGCG	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	27, 1212, 1986
BspMAI	CTGCAG	1 cut(s)	1186
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	4 cut(s)	980, 1476, 1876, 2156
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	1543
BsrFI	RCCGGY	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	1656
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	39, 231, 477, 2202, 2413
BssMI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	231, 2202
Bst2UI	CCWGG	3 cut(s)	479, 1193, 1545
Bst4CI	ACNGT	2 cut(s)	226, 1754
Bst6I	CTCTTC	3 cut(s)	167, 1806, 1955
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	6 cut(s)	68, 868, 900, 1198, 1673, 2217
BstF5I	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1780, 1798, 1810, 1831
BstFNI	CGCG	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	7 cut(s)	181, 988, 1270, 1366, 1471, 1871, 2164
BstMAI	GTCTC	3 cut(s)	107, 362, 728
BstMBI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
BstMCI	CGRYCG	1 cut(s)	247
BstNI	CCWGG	3 cut(s)	479, 1193, 1545
BstNSI	RCATGY	3 cut(s)	371, 690, 1487
BstSCI	CCNGG	6 cut(s)	99, 246, 282, 477, 1191, 1543
BstSFI	CTRYAG	2 cut(s)	578, 1182
BstSLI	GKGCMC	2 cut(s)	1276, 1637
BstUI	CGCG	1 cut(s)	930
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	4 cut(s)	985, 1363, 1868, 2161
BstYI	RGATCY	4 cut(s)	985, 1363, 1868, 2161
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	6 cut(s)	38, 287, 296, 1286, 1504, 2295
BtgZI	GCGATG	1 cut(s)	1085
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	9 cut(s)	579, 595, 694, 769, 903, 1780, 1798, 1810, 1831
BtsI	GCAGTG	1 cut(s)	1404
BtsIMutI	CAGTG	7 cut(s)	1167, 1404, 1635, 1663, 1686, 1759, 1908
Cac8I	GCNNGC	6 cut(s)	68, 868, 900, 1198, 1673, 2217
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	235, 286, 295, 1985
CseI	GACGC	3 cut(s)	28, 765, 1943
Csp6I	GTAC	6 cut(s)	133, 858, 948, 1032, 1529, 2254
CspCI	CAANNNNNGTGG	2 cut(s)	1846, 1881
CviQI	GTAC	6 cut(s)	133, 858, 948, 1032, 1529, 2254
DpnI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1870, 2163
DpnII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
DraI	TTTAAA	1 cut(s)	471
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	3 cut(s)	167, 1806, 1955
EarI	CTCTTC	3 cut(s)	167, 1806, 1955
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	4 cut(s)	51, 121, 160, 2097
Eco130I	CCWWGG	2 cut(s)	231, 2202
Eco147I	AGGCCT	1 cut(s)	2295
Eco24I	GRGCYC	4 cut(s)	53, 123, 162, 2099
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	1719
Eco47I	GGWCC	2 cut(s)	235, 1985
Eco53kI	GAGCTC	4 cut(s)	51, 121, 160, 2097
Eco57I	CTGAAG	4 cut(s)	539, 1608, 1743, 1959
Eco81I	CCTNAGG	1 cut(s)	990
Eco88I	CYCGRG	2 cut(s)	40, 2367
EcoICRI	GAGCTC	4 cut(s)	51, 121, 160, 2097
EcoO109I	RGGNCCY	2 cut(s)	235, 1985
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	3 cut(s)	477, 1191, 1543
EcoRV	GATATC	1 cut(s)	1719
EcoT14I	CCWWGG	2 cut(s)	231, 2202
EcoT38I	GRGCYC	4 cut(s)	53, 123, 162, 2099
ErhI	CCWWGG	2 cut(s)	231, 2202
Esp3I	CGTCTC	1 cut(s)	107
FalI	AAGNNNNNCTT	2 cut(s)	1932, 1964
FauI	CCCGC	1 cut(s)	2224
FokI	GGATG	9 cut(s)	586, 602, 681, 776, 890, 1787, 1805, 1817, 1838
FriOI	GRGCYC	4 cut(s)	53, 123, 162, 2099
FspBI	CTAG	5 cut(s)	428, 584, 815, 867, 2262
GlaI	GCGC	1 cut(s)	846
GsuI	CTGGAG	3 cut(s)	176, 878, 1893
HaeIII	GGCC	6 cut(s)	38, 287, 296, 1286, 1504, 2295
HapII	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2035
HgaI	GACGC	3 cut(s)	28, 765, 1943
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	2 cut(s)	1489, 2112
HindII	GTYRAC	2 cut(s)	1489, 2112
HindIII	AAGCTT	1 cut(s)	2171
HinfI	GANTC	4 cut(s)	186, 544, 1490, 2125
HpaII	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2035
HphI	GGTGA	5 cut(s)	190, 262, 626, 1742, 1778
Hpy166II	GTNNAC	8 cut(s)	133, 860, 1252, 1274, 1325, 1418, 1489, 2112
Hpy188III	TCNNGA	9 cut(s)	992, 1217, 1456, 1550, 1872, 2035, 2122, 2289, 2367
Hpy8I	GTNNAC	8 cut(s)	133, 860, 1252, 1274, 1325, 1418, 1489, 2112
Hpy99I	CGWCG	3 cut(s)	154, 230, 706
HpyAV	CCTTC	7 cut(s)	98, 286, 1459, 1632, 1661, 2305, 2317
HpyCH4III	ACNGT	2 cut(s)	226, 1754
HpyCH4IV	ACGT	2 cut(s)	267, 625
HpySE526I	ACGT	2 cut(s)	267, 625
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	845
Kpn2I	TCCGGA	1 cut(s)	2034
Kzo9I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	7 cut(s)	25, 48, 56, 118, 126, 157, 1458
LweI	GCATC	5 cut(s)	564, 763, 1210, 1843, 2092
MaeI	CTAG	5 cut(s)	428, 584, 815, 867, 2262
MaeII	ACGT	2 cut(s)	267, 625
MaeIII	GTNAC	4 cut(s)	196, 268, 931, 1165
MalI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1870, 2163
MboI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	4 cut(s)	985, 1363, 1868, 2161
MhlI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1637, 2099
MluI	ACGCGT	1 cut(s)	928
MlyI	GAGTC	1 cut(s)	1484
MmeI	TCCRAC	2 cut(s)	26, 1276
MroI	TCCGGA	1 cut(s)	2034
MroXI	GAANNNNTTC	1 cut(s)	1010
MslI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2431
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	7 cut(s)	23, 101, 201, 247, 284, 637, 2035
MspR9I	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	1335
MvaI	CCWGG	3 cut(s)	479, 1193, 1545
MvnI	CGCG	1 cut(s)	930
NciI	CCSGG	3 cut(s)	101, 248, 284
NdeII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
NheI	GCTAGC	1 cut(s)	866
NlaIV	GGNNCC	3 cut(s)	27, 1212, 1986
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	3 cut(s)	196, 268, 1165
NspI	RCATGY	3 cut(s)	371, 690, 1487
PaeR7I	CTCGAG	1 cut(s)	2367
PceI	AGGCCT	1 cut(s)	2295
PciI	ACATGT	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	1335
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	3 cut(s)	186, 544, 2125
PflMI	CCANNNNNTGG	1 cut(s)	1207
PleI	GAGTC	1 cut(s)	1484
PpsI	GAGTC	1 cut(s)	1484
Ppu21I	YACGTR	1 cut(s)	626
PpuMI	RGGWCCY	2 cut(s)	235, 1985
PscI	ACATGT	1 cut(s)	1483
PshBI	ATTAAT	1 cut(s)	822
Psp124BI	GAGCTC	4 cut(s)	53, 123, 162, 2099
Psp5II	RGGWCCY	2 cut(s)	235, 1985
Psp6I	CCWGG	3 cut(s)	477, 1191, 1543
PspGI	CCWGG	3 cut(s)	477, 1191, 1543
PspN4I	GGNNCC	3 cut(s)	27, 1212, 1986
PspPI	GGNCC	4 cut(s)	235, 286, 295, 1985
PspPPI	RGGWCCY	2 cut(s)	235, 1985
PstI	CTGCAG	1 cut(s)	1186
PsuI	RGATCY	4 cut(s)	985, 1363, 1868, 2161
RsaI	GTAC	6 cut(s)	134, 859, 949, 1033, 1530, 2255
RsaNI	GTAC	6 cut(s)	133, 858, 948, 1032, 1529, 2254
RseI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2431
SacI	GAGCTC	4 cut(s)	53, 123, 162, 2099
SapI	GCTCTTC	1 cut(s)	167
Sau3AI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1868, 2161
Sau96I	GGNCC	4 cut(s)	235, 286, 295, 1985
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	1 cut(s)	1484
ScrFI	CCNGG	6 cut(s)	101, 248, 284, 479, 1193, 1545
SduI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1637, 2099
SfaNI	GCATC	5 cut(s)	564, 763, 1210, 1843, 2092
SfcI	CTRYAG	2 cut(s)	578, 1182
SfiI	GGCCNNNNNGGCC	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	2367
SinI	GGWCC	2 cut(s)	235, 1985
SlaI	CTCGAG	1 cut(s)	2367
SmiMI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2431
SmlI	CTYRAG	2 cut(s)	375, 2367
SmoI	CTYRAG	2 cut(s)	375, 2367
SseBI	AGGCCT	1 cut(s)	2295
SsiI	CCGC	4 cut(s)	207, 210, 336, 2231
SspMI	CTAG	5 cut(s)	428, 584, 815, 867, 2262
SstI	GAGCTC	4 cut(s)	53, 123, 162, 2099
StuI	AGGCCT	1 cut(s)	2295
StyD4I	CCNGG	6 cut(s)	99, 246, 282, 477, 1191, 1543
StyI	CCWWGG	2 cut(s)	231, 2202
TaaI	ACNGT	2 cut(s)	226, 1754
TaiI	ACGT	2 cut(s)	270, 628
TaqI	TCGA	4 cut(s)	704, 1084, 1524, 2368
TatI	WGTACW	4 cut(s)	132, 947, 1528, 2253
TauI	GCSGC	2 cut(s)	210, 213
TfiI	GAWTC	3 cut(s)	186, 544, 2125
TscAI	CASTG	7 cut(s)	1174, 1404, 1642, 1663, 1693, 1759, 1915
TseFI	GTSAC	3 cut(s)	196, 268, 1165
Tsp45I	GTSAC	3 cut(s)	196, 268, 1165
TspGWI	ACGGA	3 cut(s)	131, 184, 896
TspRI	CASTG	7 cut(s)	1174, 1404, 1642, 1663, 1693, 1759, 1915
Van91I	CCANNNNNTGG	1 cut(s)	1207
VneI	GTGCAC	1 cut(s)	1272
VpaK11BI	GGWCC	2 cut(s)	235, 1985
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	6 cut(s)	995, 1256, 1317, 1838, 1904, 2407
XceI	RCATGY	3 cut(s)	371, 690, 1487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1978
XhoI	CTCGAG	1 cut(s)	2367
XmnI	GAANNNNTTC	1 cut(s)	1010
XspI	CTAG	5 cut(s)	428, 584, 815, 867, 2262
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.