Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Forward (+)

7432308 .. 7437196

Gene Structure 4889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1105900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGAATCCTCGCCGCGCCAGCATTGGAATGTCGCCGGAGGCACTCTCGGCGTCGGGTCGGGGCTCCGAGAAGATGAGCTTGCCCGCGCTTCAGTCGAAGATGAAGTGCGACCCGGAAGGGTACTTGCAGGAGCTCCAGCTGGTGTATAACCAATTCAAGTCCGCCGTGGATCTCTTCGAAAAACAATTAGAGATGGGGTTCACGTCCGTCAGCGGCGTCGGCAACGACCCGGCCGTCGCGAAGGACCTTGGCGACCGGGCGATGTTCTTGGCTCACGTCACCCCCTTTTACCCGACCCAGATGGCCCATTTCCCCGTCGAGCTCTCCCAGTTTCTCTGCTCCACCGCCCGAAAACTCCCCTCGGGGCTCCGGCTGCATGTCACCCAAGCTCTCATTCTTCTCATGAATCGAAAGATGGTTGATTTGGGAGACACTATAGCCATGTTCATGGAGCTGCAGACGTATGGGGATAAGCCTTTGAGAAAGCTGGCATTTTCTCATGTGGTTCATAGCATAAAGCGAATGAATCAGAAGCATAAGAACGAAGCAAAGAATCGGGCACTTCAAAATGTTGTTTTTGAGATGCTACGGCAAGAGGATGAAACAAAAGCAAAGAGGGCGCTTATCACGCTACGAGAGCTTCACCAGAGAAAGCAGTGGTTTGATGAAAGAACAGCAAATGCGATTTGTATTGCGTGCTTTCATCCATCTTCAAGGATAATGATTGCTTGCCTCTCATTTCTGCTTGATTACGAGAAGTTTGAAGATGGTGATAGTGATGCATCAAGTAGCGAAGATGAAGGTCCTCACACATCTCAAGTAGTCCTTAATAGAGAGTCTATTTATAAGGCACACCATCAAGGTACAATTGCTAGCAAAAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATGCGTAGTATGAAAAAACAGCAGCGCCTATCATCAGAAAAAACTAATTCAAATTATCATACGCCACTTAACCATTTGCAAGATCCACAGGGATTTGCTGAGAAACTATTCTCCCGCCTTCAAACCTGCAATGAACGATTTGAGGTCAAGATGATGATGTTGAAAGTAATTGCCCGCACGATTGGGCTTCACCGCTTGATTTTGTTGAACTTTTATCCTTTCCTTCAGAAATATATTCAGCCTCACCAACGCAATGTCACAAGTTTACTTGCTGCAGCAGTTCAGGCTTGCCATGATATGGTTCCTCCTGATGCCGTTCAACCACTGTTCAAACAACTAGTGAATCAATTTGTACATGATCGCTCACGTCCAGAGGCCATAGCTGTTGGACTGAATGTAACAAGGGAGTTATGTTTACGGATTCCATTGTTGATGACCGAAGAGTTGCTGCAAGATCTTGCATTATATAAGAAATCACATGAGAAAGCAGTTTCAATAGCAGCGCGCTCACTTATCAGTTTATTCAGAGAGATTTGCCCCTCACTGTTGATTAAGAAGGACCGTGGACGCCCCACTAACCCCAAGGCAAAACCAAAAGCTTATGGAGAAGTCAGTGTACTCAGCAATGTTCCTGGTGTTGAACTGCTAGAAGAAGATGATGGCAATGAGGACAGTGATGATGCTGATGAACATTCATTCAGCGGCACTGATGATGATGATAAAGATAATGATCTTGATCTTGATCGCGATGAGATGGTTGCTTTCAGTGATGATGATGACAACCATATGGACAACAGTGACAGTGGAAGCGAAGATGATGGAATAGAAGAGGATGCCGTGGTAGCTGAAGATGAAGATGGTGATGATAGTATAGATGATAATGACAGTGATGTCAATGGGAGTGAGGATGAGGATGACGATGAAGATGAGGAAGAAGAAGAGAATGAGGAGGAAGAATCTGACAACGATGATGCCAAAGGTAGTGGACATGGAGTAAAAGACAACAAAGCAAAAAAGAGGAAGTTTGCCGATTTTGATAAACAACTTAATCATGCTGAATCAAGTCTTCGGGCTTTGAAGAGATTGGCCAAAGAGAATATGGAGCCTGCTTCACTGGACTCAGCTGATGGTTTTCTTTCTAATGAGGACTTCCAGAGGATTAAGGAGTTAAAGGCAAAGAAGGAAGCCCAAATTGCTTTGACTCGGCAGGGATTATTGAAGAAGGGCGCAGACGCCAAGTCACCCGCATTCAAGATTCCCAGCTCATCTGAAATGAGCAGTAAGCGAGTAGATCCTGCAAAGCTTGAAGTCCACGTAAAGAAAAGGATGAGCAAGGAGGAGAGATTGGCATTAGTGAGAGCAGGGCGGGAGGAGAGAGGGAAGTACCAGGCTCGAGCCGCCATAAAACAGAAGAAGACGGGAGGTATGAGCAACAAGCAGAAGGAGCACAAAAAGCAAATGCCTATGGCTGCAAAGAGGGCAAAGGTTGCTAAATCTCGCGTGGATAAAAGGAAGCAGCAGCAGCGATCTGGCAAACAATTCCGAGGGAAGAAGGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

825

Amino Acids

93.1

Weight (kDa)

6.69

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDA1_HEAT	PF08158	89 - 462	6.9e-130	SDA1, HEAT repeat
SDA1_C	PF21638	777 - 822	2.3e-07	SDA1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AasI	GACNNNNNNGTC	2 cut(s)	233, 1799
Acc36I	ACCTGC	1 cut(s)	1043
AccB7I	CCANNNNNTGG	1 cut(s)	1207
AccII	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
AclWI	GGATC	3 cut(s)	177, 986, 2195
AcoI	YGGCCR	2 cut(s)	231, 1995
AcuI	CTGAAG	3 cut(s)	74, 1118, 1776
AcyI	GRCGYC	4 cut(s)	50, 216, 1477, 2142
AfaI	GTAC	5 cut(s)	122, 865, 1263, 1527, 2294
AfiI	CCNNNNNNNGG	1 cut(s)	1207
AhdI	GACNNNNNGTC	1 cut(s)	2146
AhlI	ACTAGT	1 cut(s)	1246
AjiI	CACGTC	3 cut(s)	204, 277, 1277
AjnI	CCWGG	2 cut(s)	1540, 2295
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
Alw21I	GWGCWC	3 cut(s)	135, 324, 2358
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	3 cut(s)	177, 986, 2195
Ama87I	CYCGRG	2 cut(s)	361, 2301
AoxI	GGCC	4 cut(s)	231, 303, 1284, 1995
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	7 cut(s)	17, 88, 622, 936, 1414, 1416, 2138
AspS9I	GGNCC	4 cut(s)	244, 304, 803, 1468
AsuC2I	CCSGG	3 cut(s)	113, 230, 257
AsuHPI	GGTGA	8 cut(s)	271, 373, 635, 782, 1091, 1145, 1781, 2142
AsuII	TTCGAA	1 cut(s)	177
AsuNHI	GCTAGC	1 cut(s)	872
AvaI	CYCGRG	2 cut(s)	361, 2301
AvaII	GGWCC	3 cut(s)	244, 803, 1468
BaeGI	GKGCMC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	1997
BanII	GRGCYC	4 cut(s)	65, 135, 324, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	1509, 1541
BbsI	GAAGAC	2 cut(s)	1967, 2330
Bbv12I	GWGCWC	3 cut(s)	135, 324, 2358
BceAI	ACGGC	5 cut(s)	149, 218, 605, 1208, 1730
BciT130I	CCWGG	2 cut(s)	1542, 2297
BcnI	CCSGG	3 cut(s)	113, 230, 257
BcoDI	GTCTC	1 cut(s)	423
BcuI	ACTAGT	1 cut(s)	1246
BfaI	CTAG	3 cut(s)	873, 1247, 1556
BfmI	CTRYAG	4 cut(s)	435, 455, 899, 1182
BfoI	RGCGCY	2 cut(s)	623, 937
BfuAI	ACCTGC	1 cut(s)	1043
BglII	AGATCT	1 cut(s)	1363
Bme1390I	CCNGG	5 cut(s)	113, 230, 257, 1542, 2297
Bme18I	GGWCC	3 cut(s)	244, 803, 1468
BmeRI	GACNNNNNGTC	1 cut(s)	2146
BmeT110I	CYCGRG	2 cut(s)	361, 2301
BmgBI	CACGTC	3 cut(s)	204, 277, 1277
BmgT120I	GGNCC	4 cut(s)	244, 304, 803, 1468
BmiI	GGNNCC	4 cut(s)	64, 368, 1212, 2013
BmrFI	CCNGG	5 cut(s)	113, 230, 257, 1542, 2297
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	7 cut(s)	573, 769, 791, 1210, 1579, 1732, 1870
BmtI	GCTAGC	1 cut(s)	876
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	1967, 2330
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	801
BpuMI	CCSGG	3 cut(s)	113, 230, 257
BsaAI	YACGTR	1 cut(s)	2224
BsaBI	GATNNNNATC	3 cut(s)	1638, 1644, 1650
BsaHI	GRCGYC	4 cut(s)	50, 216, 1477, 2142
BsaJI	CCNNGG	7 cut(s)	165, 247, 360, 1471, 1491, 1746, 2452
Bsc4I	CCNNNNNNNGG	1 cut(s)	1207
Bse1I	ACTGG	2 cut(s)	328, 2028
Bse3DI	GCAATG	4 cut(s)	1045, 1168, 1540, 1579
Bse8I	GATNNNNATC	3 cut(s)	1638, 1644, 1650
BseBI	CCWGG	2 cut(s)	1542, 2297
BseDI	CCNNGG	7 cut(s)	165, 247, 360, 1471, 1491, 1746, 2452
BseGI	GGATG	6 cut(s)	604, 703, 1747, 1822, 1828, 2241
BseJI	GATNNNNATC	3 cut(s)	1638, 1644, 1650
BseLI	CCNNNNNNNGG	1 cut(s)	1207
BseMI	GCAATG	4 cut(s)	1045, 1168, 1540, 1579
BseMII	CTCAG	3 cut(s)	999, 1543, 2043
BseNI	ACTGG	2 cut(s)	328, 2028
BsePI	GCGCGC	1 cut(s)	1412
BseRI	GAGGAG	3 cut(s)	1871, 2261, 2294
BseSI	GKGCMC	1 cut(s)	562
BseX3I	CGGCCG	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	2168
Bsh1236I	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
Bsh1285I	CGRYCG	2 cut(s)	234, 256
BshFI	GGCC	4 cut(s)	233, 305, 1286, 1997
BsiEI	CGRYCG	2 cut(s)	234, 256
BsiHKAI	GWGCWC	3 cut(s)	135, 324, 2358
BsiHKCI	CYCGRG	2 cut(s)	361, 2301
BsiSI	CCGG	5 cut(s)	35, 113, 230, 256, 370
BslI	CCNNNNNNNGG	1 cut(s)	1207
BsmAI	GTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	2156
BsnI	GGCC	4 cut(s)	233, 305, 1286, 1997
BsoBI	CYCGRG	2 cut(s)	361, 2301
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	6 cut(s)	65, 135, 324, 369, 562, 2358
Bsp1407I	TGTACA	1 cut(s)	1261
Bsp143I	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
Bsp68I	TCGCGA	2 cut(s)	239, 1656
BspANI	GGCC	4 cut(s)	233, 305, 1286, 1997
BspCNI	CTCAG	3 cut(s)	1000, 1542, 2042
BspFNI	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	4 cut(s)	64, 368, 1212, 2013
BspMAI	CTGCAG	3 cut(s)	459, 903, 1186
BspMI	ACCTGC	1 cut(s)	1043
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	3 cut(s)	177, 986, 2195
BspT104I	TTCGAA	1 cut(s)	177
BsrDI	GCAATG	4 cut(s)	1045, 1168, 1540, 1579
BsrGI	TGTACA	1 cut(s)	1261
BsrI	ACTGG	2 cut(s)	328, 2028
BssECI	CCNNGG	7 cut(s)	165, 247, 360, 1471, 1491, 1746, 2452
BssHII	GCGCGC	1 cut(s)	1412
BssMI	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
BssNI	GRCGYC	4 cut(s)	50, 216, 1477, 2142
BssT1I	CCWWGG	2 cut(s)	247, 1491
Bst2UI	CCWGG	2 cut(s)	1542, 2297
Bst4CI	ACNGT	7 cut(s)	1236, 1455, 1472, 1583, 1706, 1712, 1796
Bst6I	CTCTTC	5 cut(s)	179, 1344, 1731, 1842, 1982
BstACI	GRCGYC	4 cut(s)	50, 216, 1477, 2142
BstAPI	GCANNNNNTGC	1 cut(s)	2396
BstAUI	TGTACA	1 cut(s)	1261
BstBAI	YACGTR	1 cut(s)	2224
BstBI	TTCGAA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	1008, 1529, 2029
BstDSI	CCRYGG	3 cut(s)	165, 1471, 1746
BstF5I	GGATG	6 cut(s)	604, 703, 1747, 1822, 1828, 2241
BstFNI	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
BstH2I	RGCGCY	2 cut(s)	623, 937
BstHHI	GCGC	7 cut(s)	17, 88, 622, 936, 1414, 1416, 2138
BstKTI	GATC	9 cut(s)	172, 994, 1270, 1366, 1642, 1648, 1654, 2203, 2438
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
BstMCI	CGRYCG	2 cut(s)	234, 256
BstNI	CCWGG	2 cut(s)	1542, 2297
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	5 cut(s)	111, 228, 255, 1540, 2295
BstSFI	CTRYAG	4 cut(s)	435, 455, 899, 1182
BstSLI	GKGCMC	1 cut(s)	562
BstUI	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
BstV2I	GAAGAC	2 cut(s)	1967, 2330
BstX2I	RGATCY	4 cut(s)	169, 991, 1363, 2200
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	4 cut(s)	169, 991, 1363, 2200
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	233, 305, 1286, 1997
BtgI	CCRYGG	3 cut(s)	165, 1471, 1746
BtgZI	GCGATG	2 cut(s)	275, 1671
BtrI	CACGTC	3 cut(s)	204, 277, 1277
BtsCI	GGATG	6 cut(s)	604, 703, 1747, 1822, 1828, 2241
BtsI	GCAGTG	1 cut(s)	662
BtuMI	TCGCGA	2 cut(s)	239, 1656
BveI	ACCTGC	1 cut(s)	1043
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	7 cut(s)	17, 88, 622, 936, 1414, 1416, 2138
Cfr13I	GGNCC	4 cut(s)	244, 304, 803, 1468
CseI	GACGC	4 cut(s)	39, 205, 1485, 2150
Csp6I	GTAC	5 cut(s)	121, 864, 1262, 1526, 2293
CspCI	CAANNNNNGTGG	2 cut(s)	1873, 1908
CviQI	GTAC	5 cut(s)	121, 864, 1262, 1526, 2293
DdeI	CTNAG	3 cut(s)	1008, 1529, 2029
DpnI	GATC	9 cut(s)	171, 993, 1269, 1365, 1641, 1647, 1653, 2202, 2437
DpnII	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
DrdI	GACNNNNNNGTC	2 cut(s)	233, 1799
DriI	GACNNNNNGTC	1 cut(s)	2146
DseDI	GACNNNNNNGTC	2 cut(s)	233, 1799
EaeI	YGGCCR	2 cut(s)	231, 1995
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	5 cut(s)	179, 1344, 1731, 1842, 1982
Eam1105I	GACNNNNNGTC	1 cut(s)	2146
EarI	CTCTTC	5 cut(s)	179, 1344, 1731, 1842, 1982
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	2 cut(s)	133, 322
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	247, 1491
Eco24I	GRGCYC	4 cut(s)	65, 135, 324, 369
Eco47I	GGWCC	3 cut(s)	244, 803, 1468
Eco52I	CGGCCG	1 cut(s)	231
Eco53kI	GAGCTC	2 cut(s)	133, 322
Eco57I	CTGAAG	3 cut(s)	74, 1118, 1776
Eco88I	CYCGRG	2 cut(s)	361, 2301
EcoICRI	GAGCTC	2 cut(s)	133, 322
EcoO109I	RGGNCCY	2 cut(s)	244, 803
EcoRII	CCWGG	2 cut(s)	1540, 2295
EcoT14I	CCWWGG	2 cut(s)	247, 1491
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	4 cut(s)	65, 135, 324, 369
ErhI	CCWWGG	2 cut(s)	247, 1491
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 810, 842
FauI	CCCGC	5 cut(s)	91, 1031, 1091, 2161, 2268
FauNDI	CATATG	1 cut(s)	1695
FokI	GGATG	6 cut(s)	611, 690, 1754, 1829, 1835, 2248
FriOI	GRGCYC	4 cut(s)	65, 135, 324, 369
FspBI	CTAG	3 cut(s)	873, 1247, 1556
GlaI	GCGC	7 cut(s)	16, 87, 621, 935, 1413, 1415, 2137
GsaI	CCCAGC	1 cut(s)	2172
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	2 cut(s)	623, 937
HaeIII	GGCC	4 cut(s)	233, 305, 1286, 1997
HapII	CCGG	5 cut(s)	35, 113, 230, 256, 370
HgaI	GACGC	4 cut(s)	39, 205, 1485, 2150
HhaI	GCGC	7 cut(s)	17, 88, 622, 936, 1414, 1416, 2138
Hin1I	GRCGYC	4 cut(s)	50, 216, 1477, 2142
Hin6I	GCGC	7 cut(s)	15, 86, 620, 934, 1412, 1414, 2136
HinP1I	GCGC	7 cut(s)	15, 86, 620, 934, 1412, 1414, 2136
HindIII	AAGCTT	2 cut(s)	1506, 2210
HpaII	CCGG	5 cut(s)	35, 113, 230, 256, 370
HphI	GGTGA	8 cut(s)	271, 373, 635, 782, 1091, 1145, 1781, 2142
Hpy166II	GTNNAC	7 cut(s)	201, 1175, 1325, 1475, 1526, 1895, 2221
Hpy188I	TCNGA	8 cut(s)	67, 531, 946, 1137, 1436, 1870, 2179, 2453
Hpy8I	GTNNAC	7 cut(s)	201, 1175, 1325, 1475, 1526, 1895, 2221
Hpy99I	CGWCG	4 cut(s)	55, 221, 239, 320
HpyCH4III	ACNGT	7 cut(s)	1236, 1455, 1472, 1583, 1706, 1712, 1796
HpyCH4IV	ACGT	5 cut(s)	203, 276, 461, 1276, 2223
HpyF3I	CTNAG	3 cut(s)	1008, 1529, 2029
HpySE526I	ACGT	5 cut(s)	203, 276, 461, 1276, 2223
Hsp92I	GRCGYC	4 cut(s)	50, 216, 1477, 2142
HspAI	GCGC	7 cut(s)	15, 86, 620, 934, 1412, 1414, 2136
Kzo9I	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
LmnI	GCTCC	8 cut(s)	68, 130, 138, 344, 372, 451, 2011, 2353
LweI	GCATC	7 cut(s)	573, 769, 791, 1210, 1579, 1732, 1870
MaeI	CTAG	3 cut(s)	873, 1247, 1556
MaeII	ACGT	5 cut(s)	203, 276, 461, 1276, 2223
MaeIII	GTNAC	6 cut(s)	277, 379, 1165, 1306, 1706, 2148
MalI	GATC	9 cut(s)	171, 993, 1269, 1365, 1641, 1647, 1653, 2202, 2437
MboI	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	4 cut(s)	169, 991, 1363, 2200
MhlI	GDGCHC	6 cut(s)	65, 135, 324, 369, 562, 2358
MlsI	TGGCCA	1 cut(s)	1997
MluCI	AATT	9 cut(s)	152, 185, 867, 955, 961, 1077, 1256, 2100, 2447
MluNI	TGGCCA	1 cut(s)	1997
MlyI	GAGTC	3 cut(s)	845, 2021, 2104
MmeI	TCCRAC	1 cut(s)	1276
Mox20I	TGGCCA	1 cut(s)	1997
Mph1103I	ATGCAT	1 cut(s)	784
MroXI	GAANNNNTTC	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	1997
MseI	TTAA	6 cut(s)	828, 978, 1461, 1956, 2070, 2078
MslI	CAYNNNNRTG	3 cut(s)	26, 446, 2470
Msp20I	TGGCCA	1 cut(s)	1997
MspA1I	CMGCKG	4 cut(s)	139, 213, 1611, 2033
MspI	CCGG	5 cut(s)	35, 113, 230, 256, 370
MspR9I	CCNGG	5 cut(s)	113, 230, 257, 1542, 2297
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	2156
MvaI	CCWGG	2 cut(s)	1542, 2297
MvnI	CGCG	6 cut(s)	15, 86, 239, 1414, 1656, 2409
NciI	CCSGG	3 cut(s)	113, 230, 257
NdeI	CATATG	1 cut(s)	1695
NdeII	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
NheI	GCTAGC	1 cut(s)	872
NlaIV	GGNNCC	4 cut(s)	64, 368, 1212, 2013
NmeAIII	GCCGAG	2 cut(s)	26, 2092
NmuCI	GTSAC	5 cut(s)	277, 379, 1165, 1706, 2148
NruI	TCGCGA	2 cut(s)	239, 1656
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	2301
PagI	TCATGA	1 cut(s)	402
PauI	GCGCGC	1 cut(s)	1412
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	2156
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	9 cut(s)	4, 406, 526, 553, 1252, 1330, 1865, 1967, 2164
PflMI	CCANNNNNTGG	1 cut(s)	1207
PleI	GAGTC	3 cut(s)	844, 2021, 2104
PpsI	GAGTC	3 cut(s)	844, 2021, 2104
Ppu21I	YACGTR	1 cut(s)	2224
PpuMI	RGGWCCY	2 cut(s)	244, 803
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	2 cut(s)	135, 324
Psp5II	RGGWCCY	2 cut(s)	244, 803
Psp6I	CCWGG	2 cut(s)	1540, 2295
PspFI	CCCAGC	1 cut(s)	2168
PspGI	CCWGG	2 cut(s)	1540, 2295
PspN4I	GGNNCC	4 cut(s)	64, 368, 1212, 2013
PspPI	GGNCC	4 cut(s)	244, 304, 803, 1468
PspPPI	RGGWCCY	2 cut(s)	244, 803
PspXI	VCTCGAGB	1 cut(s)	2301
PstI	CTGCAG	3 cut(s)	459, 903, 1186
PsuI	RGATCY	4 cut(s)	169, 991, 1363, 2200
PteI	GCGCGC	1 cut(s)	1412
PvuII	CAGCTG	2 cut(s)	139, 2033
RruI	TCGCGA	2 cut(s)	239, 1656
RsaI	GTAC	5 cut(s)	122, 865, 1263, 1527, 2294
RsaNI	GTAC	5 cut(s)	121, 864, 1262, 1526, 2293
RseI	CAYNNNNRTG	3 cut(s)	26, 446, 2470
SacI	GAGCTC	2 cut(s)	135, 324
SaqAI	TTAA	6 cut(s)	828, 978, 1461, 1956, 2070, 2078
Sau3AI	GATC	9 cut(s)	169, 991, 1267, 1363, 1639, 1645, 1651, 2200, 2435
Sau96I	GGNCC	4 cut(s)	244, 304, 803, 1468
SchI	GAGTC	3 cut(s)	845, 2021, 2104
ScrFI	CCNGG	5 cut(s)	113, 230, 257, 1542, 2297
SduI	GDGCHC	6 cut(s)	65, 135, 324, 369, 562, 2358
SfaNI	GCATC	7 cut(s)	573, 769, 791, 1210, 1579, 1732, 1870
SfcI	CTRYAG	4 cut(s)	435, 455, 899, 1182
Sfr274I	CTCGAG	1 cut(s)	2301
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	3 cut(s)	244, 803, 1468
SlaI	CTCGAG	1 cut(s)	2301
SmiMI	CAYNNNNRTG	3 cut(s)	26, 446, 2470
SmlI	CTYRAG	2 cut(s)	816, 2301
SmoI	CTYRAG	2 cut(s)	816, 2301
SpeI	ACTAGT	1 cut(s)	1246
Sse9I	AATT	9 cut(s)	152, 185, 867, 955, 961, 1077, 1256, 2100, 2447
SspMI	CTAG	3 cut(s)	873, 1247, 1556
SstI	GAGCTC	2 cut(s)	135, 324
StyD4I	CCNGG	5 cut(s)	111, 228, 255, 1540, 2295
StyI	CCWWGG	2 cut(s)	247, 1491
TaaI	ACNGT	7 cut(s)	1236, 1455, 1472, 1583, 1706, 1712, 1796
TaiI	ACGT	5 cut(s)	206, 279, 464, 1279, 2226
TaqI	TCGA	5 cut(s)	95, 177, 318, 409, 2302
TaqII	GACCGA	1 cut(s)	1361
TasI	AATT	9 cut(s)	152, 185, 867, 955, 961, 1077, 1256, 2100, 2447
TatI	WGTACW	2 cut(s)	1261, 1525
TauI	GCSGC	4 cut(s)	15, 216, 1614, 2309
TfiI	GAWTC	9 cut(s)	4, 406, 526, 553, 1252, 1330, 1865, 1967, 2164
Tru1I	TTAA	6 cut(s)	828, 978, 1461, 1956, 2070, 2078
Tru9I	TTAA	6 cut(s)	828, 978, 1461, 1956, 2070, 2078
TseFI	GTSAC	5 cut(s)	277, 379, 1165, 1706, 2148
Tsp45I	GTSAC	5 cut(s)	277, 379, 1165, 1706, 2148
TspGWI	ACGGA	2 cut(s)	196, 1342
Van91I	CCANNNNNTGG	1 cut(s)	1207
VpaK11BI	GGWCC	3 cut(s)	244, 803, 1468
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2005
XhoI	CTCGAG	1 cut(s)	2301
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	3 cut(s)	873, 1247, 1556
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.