Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004693

Physical Location & Seq

Genomic Coordinates Reverse (-)

41169033 .. 41173829

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGAGTTCCCACTACATGACGCCGGAGCCACTCTCGGCCTCGGGTCGGAGCTCCGAGAAGATGAGCCTGCCGACACTTCAATCCAAGATGAAGTGCGACCCGGAAGGCTACGAGACGGAGCTCCTCCTTGTGTACAACCAATTCAAGTCGTCGCTGGAGCTCTTCAAGCAACAAGCCGATCTCGGATTCAAGTCCGTCACTGGCAGCGGCGGCAGCGACCCCACCGTGGCCAAGGACCTCGCCGACCGGGCCTTGTTTCTCGCCCACGTCACCCCCTTTTACCTGGCCCAATTGGCCCAATTCCCCTCACAGCTCTCCGAGTTTCTCCACTCCTCCGCCCGAACGCTTCCCTCTGGTCTCAGATTGCATGTTGCGCAAGCTCTCATTCTTCTTATGAACAGAAAGATGGTGGATATTGCAGACAATCTAGGTTTGTTCATGGAGATACAGACTTATGGCGATAAGGCTTTAAAGACCCTGGCATACAATCATGTCATACATAGCATAAAGCGAATGAATATGAAGCATAAGAACGAAGCTAAGAATCGGGTGCTTCAGAATGTCTTGTTTCGGATGCTACAGCTAGAGGATGAAACAAAAGCAAAGAGAGCACTTATCACTCTGCGTGAGCTTCACCGGAGAAAGGTGTGGTTTGATGAAAATACAGCGAACGCAATCTGCTCTGCATGTTTTCATCCATCGTCGAGGATAATGATTGCTTGTCTCTCATTTCTGCTTGATTACGAGAAGATTGAGGAGGAGGATGATAGTGATGCGTCAAGTAGTGATGAGGACACTCCTATTAAATCTCATCTAGCCATTAATAGAGAGGATATATATAAGGCGCACCATAAGGGTACACTTGCTAGCAAGAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATCCGTAGCCTGAAAAAACAGCAACGCGTAACATCAGAAAAAAGTACTTCAAATTATCATACGCCACTTAATCATTTGAGAGATCCACAGGAATTCGCTGAGAAGCTATTCTCCCGTCTTCAAAATAGTACAAGAGTTGAACGCTTTGAGGTCAAAATGATGATGTTGAAAGTAGTTGCTCGAACTATTGGGCTTCATCGCTTGGTTCTGTTGAACTTTTATCCTTATTTTATCAACTACATTACGCCTCATCAAAATGGTGTCACTGAATTACTCGCTGCAGCAGTACAGGCCTGCCATGATATGGTTCCTCCTGATGCAGTTGAACCACTTTTCAAACAGATAGTTAACAAATTTATAGATGATCGTGCACAGCCAGAGGCCATAGCTGTTGGACTGAATACAACAAGGGAAATTTGTTTACGAATGCCTTTGTTGATGACAGAAGATTTGCTGCAAGATCTTGCATTATATAAGAAATCACATACAAAAGCAGTGTCAGTAGCAGCCCGTTCGCTTATTGGCTTATTCAGAGAGCTTAACCCCTCGCTGCTGATTAAGAAGGATCGTGGTCGCCAACATGTTGACTCAAAGGCAAGGCCAAAAGCGTATGGAGAAGTCGATGTACTTAGCAATGTTCCTGGTCTTGATTTACTAAAACATGATGATGACAATGGGGAGAGTGATGATGATGATGATGATGAACCTTCAGTAAGGGGCACTGATGAGATGGTAGCTTCCAGTGATGATGAAGGCTTGCAAATAACCAACACTGATAGTGGAAGTGAAGATGACAACATGATATCTGAAGATGGTGATGAGATAGATGAGAATGACAGTGATGTGAGTGGTGATGAGGATGAGGTGGAAGCGGAGGATGAAGATGAGGATGAGGATGAGGAAGAGAATACAGAGGATGAGGAGGAAGAATTTGACAATAATGATGCCAACGATGGTGGATCTGGAGTAAAAGAAAACATAGCAAAAAAGAGGAAATTTGCTGATTTTGATACACAACTTAATGACGCTGAAGCAAGTCTTAGGACTTTGAAGAGATTAGCCAAAGAAAATATGGGTCCTGCTCCATCAGACTCGACAGATGGTTTTCTTTCTAATGAGGACTTTCGGAGGATTAAGGAATTAAAGGCAAAGCAGCGATTGGCTCAGCAGGGGTTGTTGAAAAAGAGCTCAGATGCGAAGTCAACAGCATTCAAGATTCCCACTTCTGATGAATTAAGCATTAAGCGAATAGATCCTGCTAAGCTTGAAGTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAGTGAAAGCAGGGAGGGAGGATAGAGGGAAGTACATGGCTAAAGCTGCTGTAAAACAGAAGAAGTCGGGAGGCCTGAGCAATAAGCAGAAGGAACATAAGAAGGCTATGCCACTTGTTGCAAAGAGGGCAAAGGTAGCTAAATCTCGAGTGCAAAAACGCAAAAAGCAGCAGCTTTCTGGCAAAAATTTCCGAGGGAAGAAAGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

809

Amino Acids

91.29

Weight (kDa)

6.56

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDA1_HEAT	PF08158	86 - 462	1.1e-127	SDA1, HEAT repeat
SDA1_C	PF21638	762 - 807	1.6e-06	SDA1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13160 AT4G31520 AT4G31520
fragaria_vesca	FvH4_4g25230 FvH4_4g25230 FvH4_4g25230
malus_domestica	MD16G1105900.v1.1
prunus_persica	Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1 Prupe.1G240500_v2.0.a1
pyrus_communis	pycom16g09000
rosa_chinensis	RchiOBHm_Chr4g0432421
rosa_laevigata	RLG00000002235 RLG00000003004 RLG00000006844
rosa_multiflora	Rmu_sc0001084.1_g000021 Rmu_sc0004638.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239540 Rroxscaffold_5G00373890
rosa_rugosa	Rorug04G0258500 Rorug04G0258600 Rorug07G0201100
rosa_samantha	Rh4AG314100 Rh4BG321900 Rh4CG337000 Rh4DG317600 Rh7BG357200 Rh7DG347600
rosa_wichuraiana	Rw4G027310 Rw7G029620 Rw7G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	1207
AccII	CGCG	1 cut(s)	930
AciI	CCGC	4 cut(s)	207, 210, 336, 1775
AclWI	GGATC	4 cut(s)	980, 1476, 1870, 2150
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	6 cut(s)	995, 1256, 1317, 1832, 1898, 2401
AcuI	CTGAAG	4 cut(s)	539, 1596, 1731, 1953
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	7 cut(s)	134, 859, 949, 1033, 1191, 1530, 2249
AfiI	CCNNNNNNNGG	4 cut(s)	45, 226, 643, 1207
AflIII	ACRYGT	2 cut(s)	928, 1483
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	282, 477, 1543
Alw21I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2093
Alw26I	GTCTC	3 cut(s)	107, 362, 728
Alw44I	GTGCAC	1 cut(s)	1272
AlwI	GGATC	4 cut(s)	980, 1476, 1870, 2150
Ama87I	CYCGRG	2 cut(s)	40, 2361
AoxI	GGCC	9 cut(s)	36, 228, 249, 285, 294, 1194, 1284, 1502, 2287
ApaLI	GTGCAC	1 cut(s)	1272
ApoI	RAATTY	6 cut(s)	995, 1256, 1317, 1832, 1898, 2401
ArsI	GACNNNNNNTTYG	4 cut(s)	1336, 1368, 1385, 1417
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	376, 847
AspS9I	GGNCC	5 cut(s)	235, 249, 286, 295, 1979
AsuC2I	CCSGG	2 cut(s)	101, 248
AsuHPI	GGTGA	4 cut(s)	262, 626, 1730, 1766
AsuNHI	GCTAGC	1 cut(s)	866
AvaI	CYCGRG	2 cut(s)	40, 2361
AvaII	GGWCC	2 cut(s)	235, 1979
BaeGI	GKGCMC	2 cut(s)	1276, 1625
BalI	TGGCCA	1 cut(s)	230
BanII	GRGCYC	4 cut(s)	53, 123, 162, 2093
BarI	GAAGNNNNNNTAC	2 cut(s)	1512, 1544
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2093
BccI	CCATC	8 cut(s)	400, 706, 911, 1627, 1709, 1850, 1996, 1997
BcgI	CGANNNNNNTGC	2 cut(s)	1398, 1432
BciT130I	CCWGG	3 cut(s)	284, 479, 1545
BcnI	CCSGG	2 cut(s)	101, 248
BcoDI	GTCTC	3 cut(s)	107, 362, 728
BfaI	CTAG	4 cut(s)	428, 584, 815, 867
BfmI	CTRYAG	3 cut(s)	578, 893, 1182
BglI	GCCNNNNNGGC	2 cut(s)	248, 293
BglII	AGATCT	1 cut(s)	1363
BlpI	GCTNAGC	2 cut(s)	2067, 2163
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	5 cut(s)	101, 248, 284, 479, 1545
Bme18I	GGWCC	2 cut(s)	235, 1979
BmeT110I	CYCGRG	2 cut(s)	40, 2361
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	235, 249, 286, 295, 1979
BmiI	GGNNCC	3 cut(s)	27, 1212, 1980
BmrFI	CCNGG	5 cut(s)	101, 248, 284, 479, 1545
BmsI	GCATC	5 cut(s)	564, 763, 1210, 1837, 2086
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	1013
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	176, 1887
Bpu10I	CCTNAGC	1 cut(s)	2291
Bpu1102I	GCTNAGC	2 cut(s)	2067, 2163
BpuMI	CCSGG	2 cut(s)	101, 248
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	6 cut(s)	39, 225, 231, 477, 2196, 2407
BsaWI	WCCGGW	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 226, 643, 1207
Bse1I	ACTGG	2 cut(s)	205, 1644
Bse3DI	GCAATG	1 cut(s)	1543
BseBI	CCWGG	3 cut(s)	284, 479, 1545
BseDI	CCNNGG	6 cut(s)	39, 225, 231, 477, 2196, 2407
BseLI	CCNNNNNNNGG	4 cut(s)	45, 226, 643, 1207
BseMI	GCAATG	1 cut(s)	1543
BseMII	CTCAG	5 cut(s)	373, 993, 2081, 2106, 2282
BseNI	ACTGG	2 cut(s)	205, 1644
BseRI	GAGGAG	6 cut(s)	113, 322, 770, 773, 1838, 2216
BseSI	GKGCMC	2 cut(s)	1276, 1625
Bsh1236I	CGCG	1 cut(s)	930
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	9 cut(s)	38, 230, 251, 287, 296, 1196, 1286, 1504, 2289
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	6 cut(s)	53, 123, 162, 613, 1276, 2093
BsiHKCI	CYCGRG	2 cut(s)	40, 2361
BsiSI	CCGG	4 cut(s)	23, 101, 247, 637
BslI	CCNNNNNNNGG	4 cut(s)	45, 226, 643, 1207
BsmAI	GTCTC	3 cut(s)	107, 362, 728
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	2 cut(s)	1335, 2111
BsnI	GGCC	9 cut(s)	38, 230, 251, 287, 296, 1196, 1286, 1504, 2289
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	40, 2361
Bsp1286I	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2093
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
Bsp1720I	GCTNAGC	2 cut(s)	2067, 2163
BspACI	CCGC	4 cut(s)	207, 210, 336, 1775
BspANI	GGCC	9 cut(s)	38, 230, 251, 287, 296, 1196, 1286, 1504, 2289
BspCNI	CTCAG	5 cut(s)	372, 994, 2080, 2105, 2283
BspFNI	CGCG	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	27, 1212, 1980
BspMAI	CTGCAG	2 cut(s)	897, 1186
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	4 cut(s)	980, 1476, 1870, 2150
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	1543
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	205, 1644
BssECI	CCNNGG	6 cut(s)	39, 225, 231, 477, 2196, 2407
BssMI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	231, 2196
Bst2UI	CCWGG	3 cut(s)	284, 479, 1545
Bst4CI	ACNGT	2 cut(s)	226, 1742
Bst6I	CTCTTC	3 cut(s)	167, 1800, 1949
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	7 cut(s)	68, 378, 868, 900, 1198, 1661, 2211
BstDEI	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1943, 2067, 2092, 2163, 2291
BstDSI	CCRYGG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	930
BstHHI	GCGC	2 cut(s)	376, 847
BstKTI	GATC	7 cut(s)	181, 988, 1270, 1366, 1471, 1865, 2158
BstMAI	GTCTC	3 cut(s)	107, 362, 728
BstMBI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
BstMCI	CGRYCG	1 cut(s)	247
BstNI	CCWGG	3 cut(s)	284, 479, 1545
BstNSI	RCATGY	3 cut(s)	371, 690, 1487
BstSCI	CCNGG	5 cut(s)	99, 246, 282, 477, 1543
BstSFI	CTRYAG	3 cut(s)	578, 893, 1182
BstSLI	GKGCMC	2 cut(s)	1276, 1625
BstUI	CGCG	1 cut(s)	930
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	4 cut(s)	985, 1363, 1862, 2155
BstYI	RGATCY	4 cut(s)	985, 1363, 1862, 2155
BsuRI	GGCC	9 cut(s)	38, 230, 251, 287, 296, 1196, 1286, 1504, 2289
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	1085
BtrI	CACGTC	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	1404
BtsIMutI	CAGTG	7 cut(s)	198, 1167, 1404, 1623, 1651, 1674, 1747
Cac8I	GCNNGC	7 cut(s)	68, 378, 868, 900, 1198, 1661, 2211
CfoI	GCGC	2 cut(s)	376, 847
Cfr13I	GGNCC	5 cut(s)	235, 249, 286, 295, 1979
CseI	GACGC	3 cut(s)	28, 765, 1937
Csp6I	GTAC	7 cut(s)	133, 858, 948, 1032, 1190, 1529, 2248
CspCI	CAANNNNNGTGG	2 cut(s)	1840, 1875
CviQI	GTAC	7 cut(s)	133, 858, 948, 1032, 1190, 1529, 2248
DdeI	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1943, 2067, 2092, 2163, 2291
DpnI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1864, 2157
DpnII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	3 cut(s)	167, 1800, 1949
EarI	CTCTTC	3 cut(s)	167, 1800, 1949
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	4 cut(s)	51, 121, 160, 2091
Eco130I	CCWWGG	2 cut(s)	231, 2196
Eco147I	AGGCCT	2 cut(s)	1196, 2289
Eco24I	GRGCYC	4 cut(s)	53, 123, 162, 2093
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	1707
Eco47I	GGWCC	2 cut(s)	235, 1979
Eco53kI	GAGCTC	4 cut(s)	51, 121, 160, 2091
Eco57I	CTGAAG	4 cut(s)	539, 1596, 1731, 1953
Eco88I	CYCGRG	2 cut(s)	40, 2361
EcoICRI	GAGCTC	4 cut(s)	51, 121, 160, 2091
EcoO109I	RGGNCCY	2 cut(s)	235, 1979
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	3 cut(s)	282, 477, 1543
EcoRV	GATATC	1 cut(s)	1707
EcoT14I	CCWWGG	2 cut(s)	231, 2196
EcoT38I	GRGCYC	4 cut(s)	53, 123, 162, 2093
ErhI	CCWWGG	2 cut(s)	231, 2196
Esp3I	CGTCTC	1 cut(s)	107
FalI	AAGNNNNNCTT	2 cut(s)	1926, 1958
FriOI	GRGCYC	4 cut(s)	53, 123, 162, 2093
FspBI	CTAG	4 cut(s)	428, 584, 815, 867
FspI	TGCGCA	1 cut(s)	375
GlaI	GCGC	2 cut(s)	375, 846
GsuI	CTGGAG	2 cut(s)	176, 1887
HaeIII	GGCC	9 cut(s)	38, 230, 251, 287, 296, 1196, 1286, 1504, 2289
HapII	CCGG	4 cut(s)	23, 101, 247, 637
HgaI	GACGC	3 cut(s)	28, 765, 1937
HhaI	GCGC	2 cut(s)	376, 847
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	374, 845
HinP1I	GCGC	2 cut(s)	374, 845
HincII	GTYRAC	3 cut(s)	1252, 1489, 2106
HindII	GTYRAC	3 cut(s)	1252, 1489, 2106
HindIII	AAGCTT	1 cut(s)	2165
HinfI	GANTC	5 cut(s)	186, 544, 1490, 1994, 2119
HpaI	GTTAAC	1 cut(s)	1252
HpaII	CCGG	4 cut(s)	23, 101, 247, 637
HphI	GGTGA	4 cut(s)	262, 626, 1730, 1766
Hpy166II	GTNNAC	7 cut(s)	133, 860, 1252, 1274, 1325, 1489, 2106
Hpy188III	TCNNGA	6 cut(s)	1217, 1550, 1866, 2116, 2283, 2361
Hpy8I	GTNNAC	7 cut(s)	133, 860, 1252, 1274, 1325, 1489, 2106
Hpy99I	CGWCG	2 cut(s)	154, 706
HpyAV	CCTTC	6 cut(s)	98, 1459, 1620, 1649, 2299, 2311
HpyCH4III	ACNGT	2 cut(s)	226, 1742
HpyCH4IV	ACGT	1 cut(s)	267
HpyF3I	CTNAG	9 cut(s)	359, 540, 1002, 1532, 1943, 2067, 2092, 2163, 2291
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	2 cut(s)	374, 845
KspAI	GTTAAC	1 cut(s)	1252
Kzo9I	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	7 cut(s)	25, 48, 56, 118, 126, 157, 1990
LweI	GCATC	5 cut(s)	564, 763, 1210, 1837, 2086
MaeI	CTAG	4 cut(s)	428, 584, 815, 867
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	196, 268, 931, 1165
MalI	GATC	7 cut(s)	180, 987, 1269, 1365, 1470, 1864, 2157
MboI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	4 cut(s)	985, 1363, 1862, 2155
MhlI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2093
MlsI	TGGCCA	1 cut(s)	230
MluI	ACGCGT	1 cut(s)	928
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	1484, 1988
MmeI	TCCRAC	2 cut(s)	26, 1276
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	1010
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2425
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	4 cut(s)	23, 101, 247, 637
MspR9I	CCNGG	5 cut(s)	101, 248, 284, 479, 1545
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	2 cut(s)	1335, 2111
MvaI	CCWGG	3 cut(s)	284, 479, 1545
MvnI	CGCG	1 cut(s)	930
NciI	CCSGG	2 cut(s)	101, 248
NdeII	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
NheI	GCTAGC	1 cut(s)	866
NlaIV	GGNNCC	3 cut(s)	27, 1212, 1980
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	3 cut(s)	196, 268, 1165
NsbI	TGCGCA	1 cut(s)	375
NspI	RCATGY	3 cut(s)	371, 690, 1487
PaeR7I	CTCGAG	1 cut(s)	2361
PceI	AGGCCT	2 cut(s)	1196, 2289
PciI	ACATGT	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	2 cut(s)	1335, 2111
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	3 cut(s)	186, 544, 2119
PflMI	CCANNNNNTGG	1 cut(s)	1207
PleI	GAGTC	2 cut(s)	1484, 1988
PpsI	GAGTC	2 cut(s)	1484, 1988
PpuMI	RGGWCCY	2 cut(s)	235, 1979
PscI	ACATGT	1 cut(s)	1483
PshBI	ATTAAT	1 cut(s)	822
Psp124BI	GAGCTC	4 cut(s)	53, 123, 162, 2093
Psp5II	RGGWCCY	2 cut(s)	235, 1979
Psp6I	CCWGG	3 cut(s)	282, 477, 1543
PspGI	CCWGG	3 cut(s)	282, 477, 1543
PspN4I	GGNNCC	3 cut(s)	27, 1212, 1980
PspPI	GGNCC	5 cut(s)	235, 249, 286, 295, 1979
PspPPI	RGGWCCY	2 cut(s)	235, 1979
PstI	CTGCAG	2 cut(s)	897, 1186
PsuI	RGATCY	4 cut(s)	985, 1363, 1862, 2155
RsaI	GTAC	7 cut(s)	134, 859, 949, 1033, 1191, 1530, 2249
RsaNI	GTAC	7 cut(s)	133, 858, 948, 1032, 1190, 1529, 2248
RseI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2425
SacI	GAGCTC	4 cut(s)	53, 123, 162, 2093
SapI	GCTCTTC	1 cut(s)	167
Sau3AI	GATC	7 cut(s)	178, 985, 1267, 1363, 1468, 1862, 2155
Sau96I	GGNCC	5 cut(s)	235, 249, 286, 295, 1979
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	2 cut(s)	1484, 1988
ScrFI	CCNGG	5 cut(s)	101, 248, 284, 479, 1545
SduI	GDGCHC	7 cut(s)	53, 123, 162, 613, 1276, 1625, 2093
SfaNI	GCATC	5 cut(s)	564, 763, 1210, 1837, 2086
SfcI	CTRYAG	3 cut(s)	578, 893, 1182
SfiI	GGCCNNNNNGGCC	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	2361
SinI	GGWCC	2 cut(s)	235, 1979
SlaI	CTCGAG	1 cut(s)	2361
SmiMI	CAYNNNNRTG	3 cut(s)	1158, 1569, 2425
SmlI	CTYRAG	1 cut(s)	2361
SmoI	CTYRAG	1 cut(s)	2361
SseBI	AGGCCT	2 cut(s)	1196, 2289
SsiI	CCGC	4 cut(s)	207, 210, 336, 1775
SspMI	CTAG	4 cut(s)	428, 584, 815, 867
SstI	GAGCTC	4 cut(s)	53, 123, 162, 2093
StuI	AGGCCT	2 cut(s)	1196, 2289
StyD4I	CCNGG	5 cut(s)	99, 246, 282, 477, 1543
StyI	CCWWGG	2 cut(s)	231, 2196
TaaI	ACNGT	2 cut(s)	226, 1742
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	5 cut(s)	704, 1084, 1524, 1997, 2362
TatI	WGTACW	6 cut(s)	132, 947, 1031, 1189, 1528, 2247
TauI	GCSGC	2 cut(s)	210, 213
TfiI	GAWTC	3 cut(s)	186, 544, 2119
TscAI	CASTG	7 cut(s)	205, 1174, 1404, 1630, 1651, 1681, 1747
TseFI	GTSAC	3 cut(s)	196, 268, 1165
Tsp45I	GTSAC	3 cut(s)	196, 268, 1165
TspGWI	ACGGA	3 cut(s)	131, 184, 896
TspRI	CASTG	7 cut(s)	205, 1174, 1404, 1630, 1651, 1681, 1747
Van91I	CCANNNNNTGG	1 cut(s)	1207
VneI	GTGCAC	1 cut(s)	1272
VpaK11BI	GGWCC	2 cut(s)	235, 1979
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	6 cut(s)	995, 1256, 1317, 1832, 1898, 2401
XceI	RCATGY	3 cut(s)	371, 690, 1487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1972
XhoI	CTCGAG	1 cut(s)	2361
XmnI	GAANNNNTTC	1 cut(s)	1010
XspI	CTAG	4 cut(s)	428, 584, 815, 867
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.